Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001301

Physical Location & Seq

Genomic Coordinates Reverse (-)

59437538 .. 59444333

Gene Structure 6796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3039 bp

ATGGCGGTCGTGGCTTGCTTTAGGCTCGTACTAGTATTCACTGTGTTTCTATATGCGGCGGAGTCGAAGTACATACAGTACAATACGACGTCGGTCCTTGTTCCCGGGAAGCTGAACGTTCATTTGGTCGCTCACACCCACGACGACGTCGGATGGCTGAAGACCATTGACCAGTACTATGTTGGCTCCAATAATTCCATCCAGGGAGCTTGTGTTCAGAACGTGCTGGATTCTTTGGTTCCGGCACTGTTAGCCGATAAGAACCGCAAGTTCGTATACGTTGAGCAGGCATTTTTCCAAAGATGGTGGAGAGATCAGAGCGAGGAGGTGCAAGACACAGTCAAGGAGCTGGTCAGCTCTGGTCAACTGGAGCTCATAAATGGGGGGATGTGTATGCACGATGAGGCGGCTCCCCATTACATTGATATGATTGATCAGACAACTCTGGGGCATCGATTTATTAAGCAGGAATTCAATTTGACTCCTAGAATCGGTTGGCAAATTGATCCATTTGGACATTCTGCTGTGCAGGCTTACCTTTTGGGGGCTGAGGTTGGATTTGACTCTCTTTTCTTTGCTCGAATTGATTACCAAGACAGAGCCAAACGAAAAGTTGACAAAAGCCTTGAGGTTGTGTGGCGGGGTTCTAAGAGTCTAGGTTCATCTGCGCAGATTTTTGCTGGTGCATTTCCTGCTAATTATGAACCTCCAAGTGATAATTTCTACTTTGAAGTTAATGATGCTGCCCCTATTGTACAAGATAATATGGATTTGTTTGACTACAATGTGCCAGACCGTGTTAATGATTTCGTATCTGCTGCTTTGTCACAAGCGAACATTACTCGGACAAATCATATCATGTGGACCATGGGAACTGATTTTAAGTATCAATATGCTCATACATGGTTTCGTCAGATGGATAAATTCATTAATTATGTGAATCAAGATGGGCGTGTCAATGCCTTGTACTCAACCCCATCAATATATACTGATGCCAAATACGCAGCAGATGAGTCATGGCCGATCAAGAGTGATGACTTCTTTCCATATGCTGACAATGTAAATGCTTACTGGACTGGATACTTTACAAGCAGACCAGCCCTCAAAGGCTATGTAAGAGTGATGAGTGGCTACTATTTGGCAGCAAGACAATTGGAATTTTTTAAGGGACGGAGTAAATCAGGGCCCAACACAGAGTATTTGGCTGACGCTTTAGCAATTGCTCAACATCATGATGCAGTTAGTGGCACATCTAAGCAGCACGTGGCTAATGATTATGCAAAACGGCTTTCAATAGGTTATGTGGAGGCGGAGAAAGTTGTCGCAGAATCACTTTCTTGCATGACAGAGTCATCACAAGCTGGTTGCAAGAGTGTTGTAACCAAGTTTCAACAGTGTCCCCTTCTGAATATTAGCTATTGTCCATCGTCAGAAGTTGATCTTTCAAAGGGGAAAGACCTGGTTATTGTTGTCTATAATTCTCTGGGATGGAAAAGAAAGGATGTGATAAAGATTCCTGTTGTCGGTGAAAATGTCATTGTAAAGGACTGTACTGGAAAAGAAATTGAATCACAGATTCTACCCCTGCTTAATGCATCCCTAAGCATAAGAAACAACCTTGTTAAGGCATATCTGGGTTTATCTCCGAGTGTGACCCCAAGTTATTGGCTTGCATTTTCAGCAACTGTACCACCTCTTGGCTTTAGCACTTACATTGTCTCAAGTGCCAAAAAGACAGCTACTACTTCAGAGCGACTTATTACAGAGTACAAGACAGAACAAAGTCAAAATAATGAAATCGAAGTGGGGCCAGGGAACTTGAAACTCATTTATTCTGGAAATGATGGAAAACTAATTGAATACAAAAACAGCAGAAGCTCGGTCAAAGAGTCGGTAGATCAATCATTTAGCTACTACCCTGGAGATGACGGAAAGCATACAAATAAATCTGATTTACAGGCCTCTGGAGCTTATATTTTCCGTCCTAATGGTTCATATCCCATTAACTCCGAAGGAGAGGGTTCTCTTACTGTTTTGAGGGGTCCATTGTTAGATGAAGTACATCAGAGGATCAACTCGTGGATATACCAGGTCACTAGAGTGTACAAGGAAAAAGAGCATGCTGAGATTGAATTTACTGTTGGGCCTATCCCAATTGATGATGGAATTGGCAAAGAGATTGTAACGAAGATTACAACCAGCATGAAGACTAACAAACAATTCTACACAGATTCTAATGGGCGTGATTTTATTGAAAGAATTCGAGACTATAGAAAAGACTGGGACCTGGAAGTGAATCAACCTGTTGCTGGAAATTATTATCCGATTAATCTGGGAATGTACACGAAAGATAACAGCAAAGAGCTGTCAGTATTAGTAGATAGATCTGTGGGTGGATCCAGCATTGTGGATGGACAATTGGAACTTATGATTCATAGGAGGTTGCTCTATGATGATGCTCGAGGTGTTGGAGAAGCACTAAATGAAACTGTGTGCATTCAAGATGATTGCAAAGGACTAACAGTCACAGGAAAGTACTATCTCAGACTTGATCCTATAGGAGAGGGTGCTAAATGGCGTCGATCACTTGGTCAGGAGATATACTCTCCATTTCTTTTAGCCTTCACAGAACAGGATGGAGATCAGTGGACAAAATCTCATGTCACAACCTTTTCAGGAATGGATCCTTCCTACAGTTTACCAGATAATGTTGCAATACTAACCATCCAGGAGCTGGAAGATGGAAAAGTTCTCTTTCGCCTGGCACATTTATACGAGATTGAAGAGGACAAGGATCTTGCGGTTATGGCAAGTGTAGAACTAAAAAAAGTGTTTGCAGACAAGAAGATAAAGCAAATAACAGAAATGAGCTTATCTGCTAATCAAGGAAGAGCTGAAATGGAGAAGAAGAGATTGGTCTGGAAAGTAGAAAGCTCCTCTGAAGAACCAAAAGTGTTGAGGGGAGGACCTGTTGATCCAACAAAGCTGGTGGTGGATCTTGCTCCAATGGAAATTCGAACATTTACGATCAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

1012

Amino Acids

113.92

Weight (kDa)

5.53

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	39 - 351	3.4e-80	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	356 - 447	2.5e-21	Alpha mannosidase middle domain
Laman-like_dom	PF21260	522 - 573	1.7e-08	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	604 - 821	7.8e-45	Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2	PF17677	903 - 1008	1.5e-07	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13980 AT5G13980 AT5G13980
fragaria_vesca	FvH4_5g09420 FvH4_5g09421 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272
malus_domestica	MD06G1131600.v1.1 MD09G1002900.v1.1 MD17G1007000.v1.1
prunus_persica	Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.5G142600_v2.0.a1 Prupe.5G142600_v2.0.a1
pyrus_communis	pycom06g12300 pycom06g12310 pycom111g00240 pycom17g00260
rosa_chinensis	RchiOBHm_Chr2g0176471 RchiOBHm_Chr2g0176481 RchiOBHm_Chr7g0188771 RchiOBHm_Chr7g0188781
rosa_laevigata	RLG00000004661 RLG00000004662 RLG00000022416
rosa_multiflora	Rmu_sc0000303.1_g000057 Rmu_sc0003642.1_g000008 Rmu_sc0011904.1_g000012
rosa_roxburghii	Rroxscaffold_2G00076370 Rroxscaffold_3G00266040 Rroxscaffold_3G00266050
rosa_rugosa	Rorug02G0595000 Rorug06G0493700
rosa_samantha	Rh2AG673300 Rh2BG684600 Rh2CG647400 Rh2DG698200 Rh7AG098300 Rh7AG098400 Rh7BG099900 Rh7BG100200 Rh7CG101600 Rh7CG101700 Rh7DG100100 Rh7DG100200
rosa_wichuraiana	Rw0G010390 Rw2G055220 Rw7G008480 Rw7G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	92, 150
Acc16I	TGCGCA	1 cut(s)	669
AccB7I	CCANNNNNTGG	2 cut(s)	1697, 2734
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	8 cut(s)	5, 56, 59, 265, 407, 640, 1310, 2801
AclI	AACGTT	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	1019
AcsI	RAATTY	6 cut(s)	470, 923, 1157, 2132, 2259, 3012
AcuI	CTGAAG	3 cut(s)	179, 1731, 2961
AcvI	CACGTG	1 cut(s)	1264
AcyI	GRCGYC	3 cut(s)	89, 147, 2578
AfiI	CCNNNNNNNGG	7 cut(s)	491, 544, 1523, 1624, 1697, 2309, 2734
AhdI	GACNNNNNGTC	1 cut(s)	2522
AhlI	ACTAGT	1 cut(s)	31
AjnI	CCWGG	8 cut(s)	201, 1458, 1810, 1918, 2088, 2286, 2727, 2760
AjuI	GAANNNNNNNTTGG	6 cut(s)	107, 139, 2124, 2156, 2897, 2929
AleI	CACNNNNGTG	1 cut(s)	2099
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	2 cut(s)	1723, 2259
AlwNI	CAGNNNCTG	2 cut(s)	1685, 2734
Ama87I	CYCGRG	2 cut(s)	104, 2460
AoxI	GGCC	5 cut(s)	1019, 1184, 1808, 1959, 2144
ApaI	GGGCCC	1 cut(s)	1188
ApeKI	GCWGC	5 cut(s)	743, 818, 1004, 1142, 1258
ApoI	RAATTY	6 cut(s)	470, 923, 1157, 2132, 2259, 3012
AseI	ATTAAT	2 cut(s)	930, 2328
Asp700I	GAANNNNTTC	1 cut(s)	2259
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	9 cut(s)	94, 864, 1184, 1185, 1808, 2042, 2144, 2284, 2966
AsuC2I	CCSGG	2 cut(s)	105, 106
AsuHPI	GGTGA	1 cut(s)	1538
AsuII	TTCGAA	1 cut(s)	3016
AvaI	CYCGRG	2 cut(s)	104, 2460
AvaII	GGWCC	5 cut(s)	94, 864, 2042, 2284, 2966
BaeGI	GKGCMC	1 cut(s)	1188
BamHI	GGATCC	2 cut(s)	2396, 2683
BanII	GRGCYC	2 cut(s)	375, 1188
BauI	CACGAG	1 cut(s)	2077
BbrPI	CACGTG	1 cut(s)	1264
BbsI	GAAGAC	2 cut(s)	167, 2213
Bbv12I	GWGCWC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	549
BbvI	GCAGC	5 cut(s)	730, 805, 1016, 1154, 1270
BceAI	ACGGC	1 cut(s)	1301
BciT130I	CCWGG	8 cut(s)	203, 1460, 1812, 1920, 2090, 2288, 2729, 2762
BciVI	GTATCC	1 cut(s)	1073
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	2 cut(s)	105, 106
BcoDI	GTCTC	2 cut(s)	1723, 2259
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	5 cut(s)	32, 486, 656, 2097, 3037
BfmI	CTRYAG	3 cut(s)	2269, 2556, 2692
BfuI	GTATCC	1 cut(s)	1073
BglII	AGATCT	1 cut(s)	2384
BisI	GCNGC	7 cut(s)	57, 408, 744, 819, 1005, 1143, 1259
BlsI	GCNGC	7 cut(s)	58, 409, 745, 820, 1006, 1144, 1260
BmcAI	AGTACT	2 cut(s)	176, 2537
Bme18I	GGWCC	5 cut(s)	94, 864, 2042, 2284, 2966
BmeRI	GACNNNNNGTC	1 cut(s)	2522
BmeT110I	CYCGRG	2 cut(s)	104, 2460
BmgT120I	GGNCC	9 cut(s)	94, 864, 1184, 1185, 1808, 2042, 2144, 2284, 2966
BmiI	GGNNCC	9 cut(s)	187, 240, 411, 1186, 1809, 2043, 2285, 2398, 2685
BmrI	ACTGGG	1 cut(s)	2290
BmsI	GCATC	6 cut(s)	460, 730, 982, 1225, 1604, 2446
BmuI	ACTGGG	1 cut(s)	2290
BoxI	GACNNNNGTC	1 cut(s)	92
BpiI	GAAGAC	2 cut(s)	167, 2213
BplI	GAGNNNNNCTC	2 cut(s)	2588, 2620
BpmI	CTGGAG	3 cut(s)	389, 1941, 1986
Bpu10I	CCTNAGC	2 cut(s)	549, 1601
Bpu14I	TTCGAA	1 cut(s)	3016
BpuEI	CTTGAG	2 cut(s)	647, 1705
BpuMI	CCSGG	2 cut(s)	105, 106
Bsa29I	ATCGAT	1 cut(s)	454
BsaAI	YACGTR	1 cut(s)	1264
BsaBI	GATNNNNATC	1 cut(s)	2640
BsaHI	GRCGYC	3 cut(s)	89, 147, 2578
BsaJI	CCNNGG	5 cut(s)	104, 202, 867, 1811, 1918
BsaXI	ACNNNNNCTCC	6 cut(s)	53, 83, 198, 228, 2955, 2985
Bsc4I	CCNNNNNNNGG	7 cut(s)	491, 544, 1523, 1624, 1697, 2309, 2734
Bse1I	ACTGG	6 cut(s)	172, 372, 1076, 1081, 1558, 2285
Bse8I	GATNNNNATC	1 cut(s)	2640
BseBI	CCWGG	8 cut(s)	203, 1460, 1812, 1920, 2090, 2288, 2729, 2762
BseCI	ATCGAT	1 cut(s)	454
BseDI	CCNNGG	5 cut(s)	104, 202, 867, 1811, 1918
BseGI	GGATG	9 cut(s)	158, 198, 393, 1493, 1507, 1595, 2416, 2641, 2724
BseJI	GATNNNNATC	1 cut(s)	2640
BseLI	CCNNNNNNNGG	7 cut(s)	491, 544, 1523, 1624, 1697, 2309, 2734
BseMII	CTCAG	3 cut(s)	540, 2115, 2557
BseNI	ACTGG	6 cut(s)	172, 372, 1076, 1081, 1558, 2285
BseRI	GAGGAG	2 cut(s)	338, 2926
BseSI	GKGCMC	1 cut(s)	1188
BseXI	GCAGC	5 cut(s)	730, 805, 1016, 1154, 1270
BsgI	GTGCAG	1 cut(s)	548
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	5 cut(s)	1021, 1186, 1810, 1961, 2146
BshVI	ATCGAT	1 cut(s)	454
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	2 cut(s)	104, 2460
BsiSI	CCGG	2 cut(s)	105, 242
BslFI	GGGAC	3 cut(s)	1182, 1383, 2297
BslI	CCNNNNNNNGG	7 cut(s)	491, 544, 1523, 1624, 1697, 2309, 2734
BsmAI	GTCTC	2 cut(s)	1723, 2259
BsmFI	GGGAC	3 cut(s)	1182, 1383, 2297
BsmI	GAATGC	1 cut(s)	2496
BsnI	GGCC	5 cut(s)	1021, 1186, 1810, 1961, 2146
BsoBI	CYCGRG	2 cut(s)	104, 2460
Bsp119I	TTCGAA	1 cut(s)	3016
Bsp120I	GGGCCC	1 cut(s)	1184
Bsp1286I	GDGCHC	2 cut(s)	375, 1188
Bsp1407I	TGTACA	3 cut(s)	754, 2103, 2340
Bsp19I	CCATGG	1 cut(s)	867
BspACI	CCGC	8 cut(s)	5, 56, 59, 265, 407, 640, 1310, 2801
BspANI	GGCC	5 cut(s)	1021, 1186, 1810, 1961, 2146
BspCNI	CTCAG	3 cut(s)	541, 2116, 2556
BspDI	ATCGAT	1 cut(s)	454
BspHI	TCATGA	1 cut(s)	1231
BspLI	GGNNCC	9 cut(s)	187, 240, 411, 1186, 1809, 2043, 2285, 2398, 2685
BspQI	GCTCTTC	1 cut(s)	2884
BspT104I	TTCGAA	1 cut(s)	3016
BsrGI	TGTACA	3 cut(s)	754, 2103, 2340
BsrI	ACTGG	6 cut(s)	172, 372, 1076, 1081, 1558, 2285
BssECI	CCNNGG	5 cut(s)	104, 202, 867, 1811, 1918
BssNAI	GTATAC	1 cut(s)	277
BssNI	GRCGYC	3 cut(s)	89, 147, 2578
BssSI	CACGAG	1 cut(s)	2077
BssT1I	CCWWGG	1 cut(s)	867
Bst1107I	GTATAC	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	2077
Bst2UI	CCWGG	8 cut(s)	203, 1460, 1812, 1920, 2090, 2288, 2729, 2762
Bst6I	CTCTTC	3 cut(s)	2778, 2884, 2903
BstACI	GRCGYC	3 cut(s)	89, 147, 2578
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstAUI	TGTACA	3 cut(s)	754, 2103, 2340
BstBAI	YACGTR	1 cut(s)	1264
BstBI	TTCGAA	1 cut(s)	3016
BstC8I	GCNNGC	5 cut(s)	16, 288, 531, 1671, 2121
BstDEI	CTNAG	6 cut(s)	549, 648, 1254, 1601, 2124, 2543
BstDSI	CCRYGG	1 cut(s)	867
BstENI	CCTNNNNNAGG	1 cut(s)	1622
BstF5I	GGATG	9 cut(s)	158, 198, 393, 1493, 1507, 1595, 2416, 2641, 2724
BstHHI	GCGC	1 cut(s)	670
BstMAI	GTCTC	2 cut(s)	1723, 2259
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 251, 530, 692, 1001, 1679, 1967, 2807
BstNI	CCWGG	8 cut(s)	203, 1460, 1812, 1920, 2090, 2288, 2729, 2762
BstNSI	RCATGY	1 cut(s)	2123
BstPAI	GACNNNNGTC	1 cut(s)	92
BstSFI	CTRYAG	3 cut(s)	2269, 2556, 2692
BstSLI	GKGCMC	1 cut(s)	1188
BstV1I	GCAGC	5 cut(s)	730, 805, 1016, 1154, 1270
BstV2I	GAAGAC	2 cut(s)	167, 2213
BstX2I	RGATCY	5 cut(s)	2384, 2396, 2683, 2794, 2995
BstXI	CCANNNNNNTGG	2 cut(s)	1665, 2407
BstYI	RGATCY	5 cut(s)	2384, 2396, 2683, 2794, 2995
BstZ17I	GTATAC	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	1073
BsuRI	GGCC	5 cut(s)	1021, 1186, 1810, 1961, 2146
BsuTUI	ATCGAT	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	867
BtsCI	GGATG	9 cut(s)	158, 198, 393, 1493, 1507, 1595, 2416, 2641, 2724
BtsIMutI	CAGTG	4 cut(s)	39, 245, 1400, 2651
Cac8I	GCNNGC	5 cut(s)	16, 288, 531, 1671, 2121
CaiI	CAGNNNCTG	2 cut(s)	1685, 2734
CciI	TCATGA	1 cut(s)	1231
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	9 cut(s)	94, 864, 1184, 1185, 1808, 2042, 2144, 2284, 2966
Cfr9I	CCCGGG	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	454
CseI	GACGC	2 cut(s)	1217, 2567
CsiI	ACCWGGT	2 cut(s)	1458, 2088
CspCI	CAANNNNNGTGG	4 cut(s)	287, 322, 2970, 3005
CviAII	CATG	9 cut(s)	859, 868, 903, 1017, 1232, 1342, 2120, 2203, 2660
DdeI	CTNAG	6 cut(s)	549, 648, 1254, 1601, 2124, 2543
DriI	GACNNNNNGTC	1 cut(s)	2522
EaeI	YGGCCR	1 cut(s)	1019
Eam1104I	CTCTTC	3 cut(s)	2778, 2884, 2903
Eam1105I	GACNNNNNGTC	1 cut(s)	2522
EarI	CTCTTC	3 cut(s)	2778, 2884, 2903
EciI	GGCGGA	2 cut(s)	74, 1325
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	867
Eco147I	AGGCCT	1 cut(s)	1961
Eco24I	GRGCYC	2 cut(s)	375, 1188
Eco47I	GGWCC	5 cut(s)	94, 864, 2042, 2284, 2966
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	3 cut(s)	179, 1731, 2961
Eco72I	CACGTG	1 cut(s)	1264
Eco88I	CYCGRG	2 cut(s)	104, 2460
EcoICRI	GAGCTC	1 cut(s)	373
EcoNI	CCTNNNNNAGG	1 cut(s)	1622
EcoO109I	RGGNCCY	3 cut(s)	1184, 2284, 2966
EcoRI	GAATTC	2 cut(s)	470, 2259
EcoRII	CCWGG	8 cut(s)	201, 1458, 1810, 1918, 2088, 2286, 2727, 2760
EcoT14I	CCWWGG	1 cut(s)	867
EcoT22I	ATGCAT	1 cut(s)	1597
EcoT38I	GRGCYC	2 cut(s)	375, 1188
ErhI	CCWWGG	1 cut(s)	867
FaeI	CATG	9 cut(s)	862, 871, 906, 1020, 1235, 1345, 2123, 2206, 2663
FalI	AAGNNNNNCTT	2 cut(s)	1425, 1457
FaqI	GGGAC	3 cut(s)	1182, 1383, 2297
FatI	CATG	9 cut(s)	858, 867, 902, 1016, 1231, 1341, 2119, 2202, 2659
FauI	CCCGC	1 cut(s)	633
FauNDI	CATATG	1 cut(s)	1048
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	7 cut(s)	57, 408, 744, 819, 1005, 1143, 1259
FokI	GGATG	9 cut(s)	165, 185, 400, 1500, 1514, 1582, 2423, 2648, 2711
FriOI	GRGCYC	2 cut(s)	375, 1188
Fsp4HI	GCNGC	7 cut(s)	57, 408, 744, 819, 1005, 1143, 1259
FspBI	CTAG	5 cut(s)	32, 486, 656, 2097, 3037
FspI	TGCGCA	1 cut(s)	669
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	7 cut(s)	57, 408, 744, 819, 1005, 1143, 1259
GsuI	CTGGAG	3 cut(s)	389, 1941, 1986
HaeIII	GGCC	5 cut(s)	1021, 1186, 1810, 1961, 2146
HapII	CCGG	2 cut(s)	105, 242
HgaI	GACGC	2 cut(s)	1217, 2567
HhaI	GCGC	1 cut(s)	670
Hin1I	GRCGYC	3 cut(s)	89, 147, 2578
Hin1II	CATG	9 cut(s)	862, 871, 906, 1020, 1235, 1345, 2123, 2206, 2663
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HincII	GTYRAC	2 cut(s)	365, 616
HindII	GTYRAC	2 cut(s)	365, 616
HpaII	CCGG	2 cut(s)	105, 242
HphI	GGTGA	1 cut(s)	1538
Hpy166II	GTNNAC	8 cut(s)	277, 365, 616, 864, 2104, 2343, 2649, 2699
Hpy8I	GTNNAC	8 cut(s)	277, 365, 616, 864, 2104, 2343, 2649, 2699
Hpy99I	CGWCG	6 cut(s)	91, 94, 146, 149, 152, 2583
HpyAV	CCTTC	4 cut(s)	1412, 2006, 2632, 2697
HpyCH4IV	ACGT	6 cut(s)	89, 117, 147, 222, 279, 1263
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 251, 530, 692, 1001, 1679, 1967, 2807
HpyF3I	CTNAG	6 cut(s)	549, 648, 1254, 1601, 2124, 2543
HpySE526I	ACGT	6 cut(s)	89, 117, 147, 222, 279, 1263
Hsp92I	GRCGYC	3 cut(s)	89, 147, 2578
Hsp92II	CATG	9 cut(s)	862, 871, 906, 1020, 1235, 1345, 2123, 2206, 2663
HspAI	GCGC	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	433
LguI	GCTCTTC	1 cut(s)	2884
LmnI	GCTCC	9 cut(s)	191, 206, 346, 370, 415, 1967, 2731, 2939, 3007
Lsp1109I	GCAGC	5 cut(s)	730, 805, 1016, 1154, 1270
LweI	GCATC	6 cut(s)	460, 730, 982, 1225, 1604, 2446
MabI	ACCWGGT	2 cut(s)	1458, 2088
MaeI	CTAG	5 cut(s)	32, 486, 656, 2097, 3037
MaeII	ACGT	6 cut(s)	89, 117, 147, 222, 279, 1263
MaeIII	GTNAC	7 cut(s)	825, 1378, 1651, 2092, 2182, 2524, 2662
MfeI	CAATTG	4 cut(s)	1151, 1218, 2154, 2417
MflI	RGATCY	5 cut(s)	2384, 2396, 2683, 2794, 2995
MhlI	GDGCHC	2 cut(s)	375, 1188
MlyI	GAGTC	7 cut(s)	71, 475, 557, 661, 1022, 1358, 1898
MmeI	TCCRAC	4 cut(s)	130, 535, 2449, 3002
Mph1103I	ATGCAT	1 cut(s)	1597
MroXI	GAANNNNTTC	1 cut(s)	2259
MslI	CAYNNNNRTG	3 cut(s)	425, 1233, 2099
MspI	CCGG	2 cut(s)	105, 242
MunI	CAATTG	4 cut(s)	1151, 1218, 2154, 2417
Mva1269I	GAATGC	1 cut(s)	2496
MvaI	CCWGG	8 cut(s)	203, 1460, 1812, 1920, 2090, 2288, 2729, 2762
MwoI	GCNNNNNNNGC	8 cut(s)	11, 251, 530, 692, 1001, 1679, 1967, 2807
NciI	CCSGG	2 cut(s)	105, 106
NcoI	CCATGG	1 cut(s)	867
NdeI	CATATG	1 cut(s)	1048
NlaIII	CATG	9 cut(s)	862, 871, 906, 1020, 1235, 1345, 2123, 2206, 2663
NlaIV	GGNNCC	9 cut(s)	187, 240, 411, 1186, 1809, 2043, 2285, 2398, 2685
NmuCI	GTSAC	5 cut(s)	825, 1651, 2092, 2524, 2662
NsbI	TGCGCA	1 cut(s)	669
NsiI	ATGCAT	1 cut(s)	1597
NspI	RCATGY	1 cut(s)	2123
NspV	TTCGAA	1 cut(s)	3016
OliI	CACNNNNGTG	1 cut(s)	2099
PaeI	GCATGC	1 cut(s)	2123
PaeR7I	CTCGAG	1 cut(s)	2460
PagI	TCATGA	1 cut(s)	1231
PceI	AGGCCT	1 cut(s)	1961
PciSI	GCTCTTC	1 cut(s)	2884
PctI	GAATGC	1 cut(s)	2496
PdmI	GAANNNNTTC	1 cut(s)	2259
PflFI	GACNNNGTC	3 cut(s)	146, 338, 1348
PflMI	CCANNNNNTGG	2 cut(s)	1697, 2734
PfoI	TCCNGGA	1 cut(s)	2727
PkrI	GCNGC	7 cut(s)	58, 409, 745, 820, 1006, 1144, 1260
PleI	GAGTC	7 cut(s)	70, 475, 557, 660, 1021, 1357, 1897
PmaCI	CACGTG	1 cut(s)	1264
PmlI	CACGTG	1 cut(s)	1264
PpsI	GAGTC	7 cut(s)	70, 475, 557, 660, 1021, 1357, 1897
Ppu21I	YACGTR	1 cut(s)	1264
PpuMI	RGGWCCY	2 cut(s)	2284, 2966
PshAI	GACNNNNGTC	1 cut(s)	92
PshBI	ATTAAT	2 cut(s)	930, 2328
Psp124BI	GAGCTC	1 cut(s)	375
Psp1406I	AACGTT	1 cut(s)	117
Psp5II	RGGWCCY	2 cut(s)	2284, 2966
Psp6I	CCWGG	8 cut(s)	201, 1458, 1810, 1918, 2088, 2286, 2727, 2760
PspCI	CACGTG	1 cut(s)	1264
PspGI	CCWGG	8 cut(s)	201, 1458, 1810, 1918, 2088, 2286, 2727, 2760
PspN4I	GGNNCC	9 cut(s)	187, 240, 411, 1186, 1809, 2043, 2285, 2398, 2685
PspOMI	GGGCCC	1 cut(s)	1184
PspPI	GGNCC	9 cut(s)	94, 864, 1184, 1185, 1808, 2042, 2144, 2284, 2966
PspPPI	RGGWCCY	2 cut(s)	2284, 2966
PspXI	VCTCGAGB	1 cut(s)	2460
PstNI	CAGNNNCTG	2 cut(s)	1685, 2734
PsuI	RGATCY	5 cut(s)	2384, 2396, 2683, 2794, 2995
PsyI	GACNNNGTC	3 cut(s)	146, 338, 1348
RseI	CAYNNNNRTG	3 cut(s)	425, 1233, 2099
SacI	GAGCTC	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	2884
SatI	GCNGC	7 cut(s)	57, 408, 744, 819, 1005, 1143, 1259
Sau96I	GGNCC	9 cut(s)	94, 864, 1184, 1185, 1808, 2042, 2144, 2284, 2966
ScaI	AGTACT	2 cut(s)	176, 2537
SchI	GAGTC	7 cut(s)	71, 475, 557, 661, 1022, 1358, 1898
SduI	GDGCHC	2 cut(s)	375, 1188
SexAI	ACCWGGT	2 cut(s)	1458, 2088
SfaNI	GCATC	6 cut(s)	460, 730, 982, 1225, 1604, 2446
SfcI	CTRYAG	3 cut(s)	2269, 2556, 2692
Sfr274I	CTCGAG	1 cut(s)	2460
SfuI	TTCGAA	1 cut(s)	3016
SinI	GGWCC	5 cut(s)	94, 864, 2042, 2284, 2966
SlaI	CTCGAG	1 cut(s)	2460
SmaI	CCCGGG	1 cut(s)	106
SmiMI	CAYNNNNRTG	3 cut(s)	425, 1233, 2099
SmlI	CTYRAG	3 cut(s)	626, 1720, 2460
SmoI	CTYRAG	3 cut(s)	626, 1720, 2460
SpeI	ACTAGT	1 cut(s)	31
SphI	GCATGC	1 cut(s)	2123
SseBI	AGGCCT	1 cut(s)	1961
SsiI	CCGC	8 cut(s)	5, 56, 59, 265, 407, 640, 1310, 2801
SspI	AATATT	1 cut(s)	1411
SspMI	CTAG	5 cut(s)	32, 486, 656, 2097, 3037
SstI	GAGCTC	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	1961
StyI	CCWWGG	1 cut(s)	867
TaiI	ACGT	6 cut(s)	92, 120, 150, 225, 282, 1266
TaqI	TCGA	8 cut(s)	65, 454, 580, 1800, 2263, 2461, 2581, 3016
TaqII	GACCGA	2 cut(s)	82, 1870
TauI	GCSGC	2 cut(s)	59, 410
TscAI	CASTG	4 cut(s)	46, 252, 1400, 2651
TseFI	GTSAC	5 cut(s)	825, 1651, 2092, 2524, 2662
TseI	GCWGC	5 cut(s)	743, 818, 1004, 1142, 1258
Tsp45I	GTSAC	5 cut(s)	825, 1651, 2092, 2524, 2662
TspGWI	ACGGA	3 cut(s)	1186, 1944, 1970
TspMI	CCCGGG	1 cut(s)	104
TspRI	CASTG	4 cut(s)	46, 252, 1400, 2651
Tth111I	GACNNNGTC	3 cut(s)	146, 338, 1348
Van91I	CCANNNNNTGG	2 cut(s)	1697, 2734
VpaK11BI	GGWCC	5 cut(s)	94, 864, 2042, 2284, 2966
VspI	ATTAAT	2 cut(s)	930, 2328
XagI	CCTNNNNNAGG	1 cut(s)	1622
XapI	RAATTY	6 cut(s)	470, 923, 1157, 2132, 2259, 3012
XceI	RCATGY	1 cut(s)	2123
XcmI	CCANNNNNNNNNTGG	2 cut(s)	179, 2731
XhoI	CTCGAG	1 cut(s)	2460
XmaI	CCCGGG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	2259
XspI	CTAG	5 cut(s)	32, 486, 656, 2097, 3037
ZraI	GACGTC	2 cut(s)	90, 148
ZrmI	AGTACT	2 cut(s)	176, 2537
Zsp2I	ATGCAT	1 cut(s)	1597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.