Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001301

Physical Location & Seq

Genomic Coordinates Forward (+)

7427804 .. 7434787

Gene Structure 6984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG100200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2997 bp

ATGGCTTACAATACAACGTCGCAGATTGTCCCCGGAAAGCTTAACGTTCATTTAGTTCCTCACACCCATGACGATGTCGGATGGCTGAAAACCGTTGACCAGTACTACACCGGTGCCAATAATTCTCTCCTGGCGGCTCCCGCTTGTGTTCGAAACGTGTTGGATTCTTTAGTTCCCGCATTGTTGGCCGATAAGAACCGCAAGTTCATATATGCTGAGCAGGCATTTTTTGAACTATGGTGGAGAGAACAGAGCGAGGCGATCCAAGACACAGTCAAGCAGCTAGTCAGCTCTGGCCAACTGGAATTCATAAATGGGGGGATGTGCATGCACGATGAGGCTGCTACGCATTACATTGATATGATTGATCAGACGACTCTAGGGCATCGATTTATTAAGCAAGAGTTCAATGTGACACCAAGAGTTGGCTGGCAAATAGATTCGTTTGGACATTCTTCTGTGCAGGCTTACCTTTTGGCGGCTGAGGTTGGCTTTGATTCCCTATTTTTTGGACGAATCGACTACCAAGATATAGCTACGAGGAAAAATGAGAAAAGCCTTGAGGTTGTGTGGCGGGGTTCTAAGAGTCTCGGTTCATCTGCACAGATTTTTGCTGGTGCATTCCCTAGGCTATATGTTCCTCCTTCTGATAATTTCTACTTTGACACTGATGACGTCCTTGCCCCTTTTGTACAAGATGATATGAATCTTGGTGACTACAATGTGGCAGATCGCGTTAATGATTTTGTATCTGAAGCAATATCACAGGCAAACATTACTCGTACAAATCATATCATGTGGACCATGGGAAAGGATTTCGCGTATCAATATGCTAATTCATGGTTCAGTCAGATGGACAAATTCATTCATCATGTGAATCAAGATGGGCGTGTCAATGCCCTATACTCAACCCCATCAATATACACCGATGCCAAATATGCAACAAATGAGTCCTGGCCAATCAAGAGTGATGACTTCTTTCCATATGCTAGTGAAGTGAATGCATACTGGACTGGATATTTTACAAGCAGGCCAGCCCTCAAACGTTATGTTAGAATGATGAGTAGCTACTATTTGGCAGCAAGGCAATTGGAATTTTTTAAGGGAATAAGTAAATCAGGGCCTAATACAGATTCTCTGGCTGATGCTTTAGCAATTGCTCAACATCATGATGCAGTTAGTGGCACATCTCGGCAGCACGTAGCCGATGATTATACAAAACGACTTTCAATAGGCTACAAGGAGGCTGAGAAGGTTGTTGCAGAATCACTTTCTTGCTTGATAAGTTCAAGATCAAGTACTGGTTGCAAGAGTGTAGTAACAAAGTTTCAACAGTGTCCACTTCTGAATATTAGCTATTGCCCCCCGTCAGAAGTTGATCTTTCAAAGGGGAAACACCTGGTTATTGTTGTCTATAACCCTCTGGGATGGAAAAGAGAGGATGTGATAAAGATTCCTGTTGTCAGTGAAAAAGTCACTGTAAAGGACTCCACCGGAAAGGAAATTGAATCACAGATTCTACCGCTGCTTAATGCATCTGTCAGCATAAGAAATGACCATGTTAAGGCATATTTGGGTATAGCACCGAGTGTGACCACAAGTTATTGGCTTGCATTTTCAGCAACTGTACCACCTCTTGGTTTTAGCACTTACATGGTCTCAAGTGCTGCCACAGAGACAGCTACTACTTCAGAGAGACATACAGTGTACAAGACAGAAACAAGTCAAAATGAAACAATAAAAGTTGGGCCTGGAAACTTGAAACTCATTTATTCTGGAAACGATGGAAAACTGATTCAGTACACAAACAGCAGAAGCTCGGTCAAAGAGTCGGTAAAGCAATCATTTAGCTACTACCCTGGAGATGATGGAAGTGTGGTGGATTACGGTGAGGATGGAAATCCGCATTTTCAGGCCTCAGGAGCATATGTCTTCCGTCCTAATGGTACATATCCCATTAAATCAGAAGGGCAGGTTTCTTTGACTATTTTAAGGGGACCATTGTTGGATGAAATACATGAAAGGATCAACTCTTGGATATATCAGGTCACTAGAGTGTACAGGGAAAAAGAGCATGCTGAGATTGAATTTACTATAGGGCCTATACCAGTTGATGATGGAATAGGCAAAGAGATTGTAACTAGGATTACAACCAGCATGAGAACCAACAAACAATTCTACACAGATTCTAACGGGCGCGATTTTATTCAAAGAATTCGAGACTACAGAAAAGACTGGGACCTGGAAGTAAACCAACCTGTCGCAGGAAACTATTATCCGATTAATCTGGGAATCTATACGAAAGATAACAACACAGAGCTGTCAGTATTAGTGGATAGATCGGTAGGGGGATCCAGCATTGTGGACGGGCAATTGGAACTGATGCTTCATAGGAGGTTGCTTGCAGATGATGACAAAGGTATTGCAGAGCAACTAAATGAAACGGTGTGCATTGAACATGATTGCAAAGGACTAACAATTACAGGAAAGTACCACCTGAGAATTGATCCTTTAGGAGAGGGTGCTAAGTGGCGTCGATCATTTGGTCAGGAGATATATTCTCCATTTCTATTAGCCTTCACAGAACAAGATGGAGATGACTGGACAAACTCTCATGTCACAACCTTTTCGGGAATGGATCCTTCCTACACTTTACCTGATAATGTTGCAATTATAACTCTCCAGGAGCTGGAAGATGGGAAAGTTCTCTTTCGCCTGGCGCATTTATACGAGATTGAAGAGGACAAGCATCTTTCAGTTATGGCAAGTGTGGAACTGAAAAAGGTGTTTGCAAACAAGAAGATAAAGCATATAACAGAAATGAGCTTATCTGCTAACCAAGAAAGAAGGGAAATGGAAAGGAAGAGACTGGTTTGGAATGTGCAAGGCTCTTCTGAGGAAGGACCGAAAGGCTTGAGGGGAGGACCTGTTGATCCAACAAAGCTAGTGGTGAATCTTGCTCCAATGGAAATTAGAACATTTACCATCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

998

Amino Acids

112.35

Weight (kDa)

5.64

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	15 - 330	1.5e-79	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	335 - 427	1.8e-22	Alpha mannosidase middle domain
Laman-like_dom	PF21260	530 - 553	6.4e-09	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	584 - 804	3.4e-42	Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2	PF17677	888 - 994	1.2e-07	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13980 AT5G13980 AT5G13980
fragaria_vesca	FvH4_5g09420 FvH4_5g09421 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272
malus_domestica	MD06G1131600.v1.1 MD09G1002900.v1.1 MD17G1007000.v1.1
prunus_persica	Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.5G142600_v2.0.a1 Prupe.5G142600_v2.0.a1
pyrus_communis	pycom06g12300 pycom06g12310 pycom111g00240 pycom17g00260
rosa_chinensis	RchiOBHm_Chr2g0176471 RchiOBHm_Chr2g0176481 RchiOBHm_Chr7g0188771 RchiOBHm_Chr7g0188781
rosa_laevigata	RLG00000004661 RLG00000004662 RLG00000022416
rosa_multiflora	Rmu_sc0000303.1_g000057 Rmu_sc0003642.1_g000008 Rmu_sc0011904.1_g000012
rosa_roxburghii	Rroxscaffold_2G00076370 Rroxscaffold_3G00266040 Rroxscaffold_3G00266050
rosa_rugosa	Rorug02G0595000 Rorug06G0493700
rosa_samantha	Rh2AG673300 Rh2BG684600 Rh2CG647400 Rh2DG698200 Rh7AG098300 Rh7AG098400 Rh7BG099900 Rh7BG100200 Rh7CG101600 Rh7CG101700 Rh7DG100100 Rh7DG100200
rosa_wichuraiana	Rw0G010390 Rw2G055220 Rw7G008480 Rw7G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2675
AatII	GACGTC	1 cut(s)	678
Acc36I	ACCTGC	1 cut(s)	1963
AccB1I	GGYRCC	1 cut(s)	113
AccB7I	CCANNNNNTGG	3 cut(s)	425, 1637, 2689
AccII	CGCG	3 cut(s)	735, 821, 2199
AciI	CCGC	8 cut(s)	134, 141, 177, 199, 479, 574, 1523, 1904
AclI	AACGTT	2 cut(s)	45, 1045
AclWI	GGATC	8 cut(s)	256, 2033, 2346, 2359, 2501, 2633, 2646, 2927
AcoI	YGGCCR	3 cut(s)	186, 295, 956
AcsI	RAATTY	5 cut(s)	305, 860, 1094, 2087, 2214
AcuI	CTGAAG	2 cut(s)	774, 1674
AcyI	GRCGYC	2 cut(s)	675, 2533
AdeI	CACNNNGTG	1 cut(s)	1589
AfiI	CCNNNNNNNGG	6 cut(s)	425, 478, 1564, 1637, 2264, 2689
AflIII	ACRYGT	1 cut(s)	156
AgeI	ACCGGT	1 cut(s)	110
AjnI	CCWGG	8 cut(s)	129, 953, 1398, 1750, 1858, 2241, 2682, 2715
AjuI	GAANNNNNNNTTGG	2 cut(s)	2159, 2191
AleI	CACNNNNGTG	1 cut(s)	2054
Alw26I	GTCTC	6 cut(s)	593, 1663, 1670, 1690, 2214, 2860
AlwI	GGATC	8 cut(s)	256, 2033, 2346, 2359, 2501, 2633, 2646, 2927
AlwNI	CAGNNNCTG	2 cut(s)	1625, 2689
AoxI	GGCC	8 cut(s)	186, 295, 956, 1031, 1121, 1748, 1914, 2099
ApeKI	GCWGC	6 cut(s)	280, 341, 1079, 1195, 1525, 1667
ApoI	RAATTY	5 cut(s)	305, 860, 1094, 2087, 2214
AseI	ATTAAT	1 cut(s)	2283
AsiGI	ACCGGT	1 cut(s)	110
AspA2I	CCTAGG	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	2199, 2722
AspS9I	GGNCC	8 cut(s)	801, 1121, 1748, 1997, 2099, 2239, 2903, 2924
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	3 cut(s)	725, 1901, 2962
AsuII	TTCGAA	1 cut(s)	151
AvaII	GGWCC	5 cut(s)	801, 1997, 2239, 2903, 2924
AvrII	CCTAGG	1 cut(s)	626
AxyI	CCTNAGG	1 cut(s)	1918
BalI	TGGCCA	2 cut(s)	297, 958
BamHI	GGATCC	2 cut(s)	2351, 2638
BanI	GGYRCC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	1924
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	6 cut(s)	292, 328, 1091, 1207, 1512, 1654
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	8 cut(s)	131, 955, 1400, 1752, 1860, 2243, 2684, 2717
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	6 cut(s)	593, 1663, 1670, 1690, 2214, 2860
BfaI	CTAG	8 cut(s)	284, 380, 627, 990, 2052, 2142, 2945, 2995
BfmI	CTRYAG	2 cut(s)	2094, 2224
BfuAI	ACCTGC	1 cut(s)	1963
BisI	GCNGC	8 cut(s)	135, 281, 342, 480, 1080, 1196, 1526, 1668
BlnI	CCTAGG	1 cut(s)	626
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	8 cut(s)	136, 282, 343, 481, 1081, 1197, 1527, 1669
BmcAI	AGTACT	2 cut(s)	104, 1300
Bme1390I	CCNGG	9 cut(s)	33, 131, 955, 1400, 1752, 1860, 2243, 2684, 2717
Bme18I	GGWCC	5 cut(s)	801, 1997, 2239, 2903, 2924
BmgT120I	GGNCC	8 cut(s)	801, 1121, 1748, 1997, 2099, 2239, 2903, 2924
BmiI	GGNNCC	6 cut(s)	115, 138, 1998, 2240, 2353, 2640
BmrFI	CCNGG	9 cut(s)	33, 131, 955, 1400, 1752, 1860, 2243, 2684, 2717
BmrI	ACTGGG	1 cut(s)	2245
BmsI	GCATC	7 cut(s)	394, 919, 1135, 1162, 1544, 2373, 2758
BmuI	ACTGGG	1 cut(s)	2245
BpiI	GAAGAC	1 cut(s)	1924
BpmI	CTGGAG	2 cut(s)	1881, 2666
Bpu10I	CCTNAGC	1 cut(s)	483
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	151
BpuEI	CTTGAG	3 cut(s)	581, 1645, 2935
BpuMI	CCSGG	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	388
BsaAI	YACGTR	1 cut(s)	1201
BsaBI	GATNNNNATC	2 cut(s)	705, 1899
BsaHI	GRCGYC	2 cut(s)	675, 2533
BsaI	GGTCTC	1 cut(s)	1663
BsaJI	CCNNGG	4 cut(s)	31, 626, 804, 1858
BsaWI	WCCGGW	2 cut(s)	110, 1493
BsaXI	ACNNNNNCTCC	4 cut(s)	1914, 1944, 2913, 2943
Bsc4I	CCNNNNNNNGG	6 cut(s)	425, 478, 1564, 1637, 2264, 2689
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	9 cut(s)	100, 306, 1013, 1018, 1306, 2108, 2240, 2606, 2874
Bse21I	CCTNAGG	1 cut(s)	1918
Bse8I	GATNNNNATC	2 cut(s)	705, 1899
BseBI	CCWGG	8 cut(s)	131, 955, 1400, 1752, 1860, 2243, 2684, 2717
BseCI	ATCGAT	1 cut(s)	388
BseDI	CCNNGG	4 cut(s)	31, 626, 804, 1858
BseGI	GGATG	6 cut(s)	86, 327, 1433, 1447, 1900, 2014
BseJI	GATNNNNATC	2 cut(s)	705, 1899
BseLI	CCNNNNNNNGG	6 cut(s)	425, 478, 1564, 1637, 2264, 2689
BseMII	CTCAG	7 cut(s)	207, 474, 1239, 1932, 2070, 2489, 2886
BseNI	ACTGG	9 cut(s)	100, 306, 1013, 1018, 1306, 2108, 2240, 2606, 2874
BseXI	GCAGC	6 cut(s)	292, 328, 1091, 1207, 1512, 1654
BsgI	GTGCAG	2 cut(s)	482, 585
Bsh1236I	CGCG	3 cut(s)	735, 821, 2199
BshFI	GGCC	8 cut(s)	188, 297, 958, 1033, 1123, 1750, 1916, 2101
BshNI	GGYRCC	1 cut(s)	113
BshTI	ACCGGT	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	388
BsiSI	CCGG	3 cut(s)	33, 111, 1494
BslFI	GGGAC	3 cut(s)	14, 2010, 2252
BslI	CCNNNNNNNGG	6 cut(s)	425, 478, 1564, 1637, 2264, 2689
BsmAI	GTCTC	6 cut(s)	593, 1663, 1670, 1690, 2214, 2860
BsmFI	GGGAC	3 cut(s)	14, 2010, 2252
BsmI	GAATGC	2 cut(s)	620, 1006
BsnI	GGCC	8 cut(s)	188, 297, 958, 1033, 1123, 1750, 1916, 2101
Bso31I	GGTCTC	1 cut(s)	1663
Bsp119I	TTCGAA	1 cut(s)	151
Bsp1407I	TGTACA	3 cut(s)	691, 1707, 2058
Bsp1720I	GCTNAGC	1 cut(s)	216
Bsp19I	CCATGG	1 cut(s)	804
BspACI	CCGC	8 cut(s)	134, 141, 177, 199, 479, 574, 1523, 1904
BspANI	GGCC	8 cut(s)	188, 297, 958, 1033, 1123, 1750, 1916, 2101
BspCNI	CTCAG	7 cut(s)	208, 475, 1240, 1931, 2071, 2490, 2887
BspDI	ATCGAT	1 cut(s)	388
BspFNI	CGCG	3 cut(s)	735, 821, 2199
BspHI	TCATGA	1 cut(s)	1168
BspLI	GGNNCC	6 cut(s)	115, 138, 1998, 2240, 2353, 2640
BspMI	ACCTGC	1 cut(s)	1963
BspPI	GGATC	8 cut(s)	256, 2033, 2346, 2359, 2501, 2633, 2646, 2927
BspQI	GCTCTTC	1 cut(s)	2896
BspT104I	TTCGAA	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	1663
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	3 cut(s)	691, 1707, 2058
BsrI	ACTGG	9 cut(s)	100, 306, 1013, 1018, 1306, 2108, 2240, 2606, 2874
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	4 cut(s)	31, 626, 804, 1858
BssNI	GRCGYC	2 cut(s)	675, 2533
BssT1I	CCWWGG	2 cut(s)	626, 804
Bst2UI	CCWGG	8 cut(s)	131, 955, 1400, 1752, 1860, 2243, 2684, 2717
Bst4CI	ACNGT	8 cut(s)	94, 274, 1335, 1480, 1627, 1705, 1889, 2446
Bst6I	CTCTTC	3 cut(s)	2733, 2858, 2896
BstACI	GRCGYC	2 cut(s)	675, 2533
BstAUI	TGTACA	3 cut(s)	691, 1707, 2058
BstBAI	YACGTR	1 cut(s)	1201
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	9 cut(s)	222, 329, 431, 465, 1031, 1035, 1611, 2076, 2403
BstDEI	CTNAG	9 cut(s)	216, 483, 582, 1248, 1918, 2079, 2498, 2526, 2895
BstDSI	CCRYGG	1 cut(s)	804
BstENI	CCTNNNNNAGG	1 cut(s)	2262
BstF5I	GGATG	6 cut(s)	86, 327, 1433, 1447, 1900, 2014
BstFNI	CGCG	3 cut(s)	735, 821, 2199
BstHHI	GCGC	2 cut(s)	2199, 2722
BstMAI	GTCTC	6 cut(s)	593, 1663, 1670, 1690, 2214, 2860
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 185, 221, 938, 1619, 1922
BstNI	CCWGG	8 cut(s)	131, 955, 1400, 1752, 1860, 2243, 2684, 2717
BstNSI	RCATGY	2 cut(s)	331, 2078
BstSCI	CCNGG	9 cut(s)	31, 129, 953, 1398, 1750, 1858, 2241, 2682, 2715
BstSFI	CTRYAG	2 cut(s)	2094, 2224
BstUI	CGCG	3 cut(s)	735, 821, 2199
BstV1I	GCAGC	6 cut(s)	292, 328, 1091, 1207, 1512, 1654
BstV2I	GAAGAC	1 cut(s)	1924
BstX2I	RGATCY	2 cut(s)	2351, 2638
BstXI	CCANNNNNNTGG	1 cut(s)	2362
BstYI	RGATCY	2 cut(s)	2351, 2638
Bsu15I	ATCGAT	1 cut(s)	388
Bsu36I	CCTNAGG	1 cut(s)	1918
BsuRI	GGCC	8 cut(s)	188, 297, 958, 1033, 1123, 1750, 1916, 2101
BsuTUI	ATCGAT	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	804
BtsCI	GGATG	6 cut(s)	86, 327, 1433, 1447, 1900, 2014
BtsIMutI	CAGTG	5 cut(s)	666, 1340, 1471, 1476, 1710
BveI	ACCTGC	1 cut(s)	1963
Cac8I	GCNNGC	9 cut(s)	222, 329, 431, 465, 1031, 1035, 1611, 2076, 2403
CaiI	CAGNNNCTG	2 cut(s)	1625, 2689
CciI	TCATGA	1 cut(s)	1168
CfoI	GCGC	2 cut(s)	2199, 2722
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	8 cut(s)	801, 1121, 1748, 1997, 2099, 2239, 2903, 2924
ClaI	ATCGAT	1 cut(s)	388
CseI	GACGC	1 cut(s)	2522
CsiI	ACCWGGT	1 cut(s)	1398
CspAI	ACCGGT	1 cut(s)	110
CspCI	CAANNNNNGTGG	2 cut(s)	2928, 2963
DdeI	CTNAG	9 cut(s)	216, 483, 582, 1248, 1918, 2079, 2498, 2526, 2895
DraIII	CACNNNGTG	1 cut(s)	1589
EaeI	YGGCCR	3 cut(s)	186, 295, 956
Eam1104I	CTCTTC	3 cut(s)	2733, 2858, 2896
EarI	CTCTTC	3 cut(s)	2733, 2858, 2896
Eco130I	CCWWGG	2 cut(s)	626, 804
Eco147I	AGGCCT	1 cut(s)	1916
Eco31I	GGTCTC	1 cut(s)	1663
Eco47I	GGWCC	5 cut(s)	801, 1997, 2239, 2903, 2924
Eco57I	CTGAAG	2 cut(s)	774, 1674
Eco81I	CCTNAGG	1 cut(s)	1918
EcoNI	CCTNNNNNAGG	1 cut(s)	2262
EcoO109I	RGGNCCY	4 cut(s)	1121, 2099, 2239, 2924
EcoRI	GAATTC	2 cut(s)	305, 2214
EcoRII	CCWGG	8 cut(s)	129, 953, 1398, 1750, 1858, 2241, 2682, 2715
EcoT14I	CCWWGG	2 cut(s)	626, 804
EcoT22I	ATGCAT	2 cut(s)	1006, 1537
ErhI	CCWWGG	2 cut(s)	626, 804
FalI	AAGNNNNNCTT	2 cut(s)	1365, 1397
FaqI	GGGAC	3 cut(s)	14, 2010, 2252
FauI	CCCGC	3 cut(s)	148, 184, 567
FauNDI	CATATG	2 cut(s)	985, 1927
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	8 cut(s)	135, 281, 342, 480, 1080, 1196, 1526, 1668
FokI	GGATG	6 cut(s)	93, 334, 1440, 1454, 1907, 2021
Fsp4HI	GCNGC	8 cut(s)	135, 281, 342, 480, 1080, 1196, 1526, 1668
FspBI	CTAG	8 cut(s)	284, 380, 627, 990, 2052, 2142, 2945, 2995
GlaI	GCGC	2 cut(s)	2198, 2721
GluI	GCNGC	8 cut(s)	135, 281, 342, 480, 1080, 1196, 1526, 1668
GsuI	CTGGAG	2 cut(s)	1881, 2666
HaeIII	GGCC	8 cut(s)	188, 297, 958, 1033, 1123, 1750, 1916, 2101
HapII	CCGG	3 cut(s)	33, 111, 1494
HgaI	GACGC	1 cut(s)	2522
HhaI	GCGC	2 cut(s)	2199, 2722
Hin1I	GRCGYC	2 cut(s)	675, 2533
Hin6I	GCGC	2 cut(s)	2197, 2720
HinP1I	GCGC	2 cut(s)	2197, 2720
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	38
HpaII	CCGG	3 cut(s)	33, 111, 1494
HphI	GGTGA	3 cut(s)	725, 1901, 2962
Hpy166II	GTNNAC	8 cut(s)	97, 801, 1340, 1708, 1803, 2059, 2251, 2365
Hpy188III	TCNNGA	9 cut(s)	881, 964, 1169, 1290, 1776, 1920, 2219, 2549, 2631
Hpy8I	GTNNAC	8 cut(s)	97, 801, 1340, 1708, 1803, 2059, 2251, 2365
Hpy99I	CGWCG	2 cut(s)	22, 2538
HpyAV	CCTTC	7 cut(s)	654, 1246, 1961, 2587, 2652, 2841, 2894
HpyCH4III	ACNGT	8 cut(s)	94, 274, 1335, 1480, 1627, 1705, 1889, 2446
HpyCH4IV	ACGT	6 cut(s)	17, 45, 156, 675, 1045, 1200
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 185, 221, 938, 1619, 1922
HpyF3I	CTNAG	9 cut(s)	216, 483, 582, 1248, 1918, 2079, 2498, 2526, 2895
HpySE526I	ACGT	6 cut(s)	17, 45, 156, 675, 1045, 1200
Hsp92I	GRCGYC	2 cut(s)	675, 2533
HspAI	GCGC	2 cut(s)	2197, 2720
Ksp22I	TGATCA	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	2896
LmnI	GCTCC	4 cut(s)	142, 1922, 2686, 2965
Lsp1109I	GCAGC	6 cut(s)	292, 328, 1091, 1207, 1512, 1654
LweI	GCATC	7 cut(s)	394, 919, 1135, 1162, 1544, 2373, 2758
MabI	ACCWGGT	1 cut(s)	1398
MaeI	CTAG	8 cut(s)	284, 380, 627, 990, 2052, 2142, 2945, 2995
MaeII	ACGT	6 cut(s)	17, 45, 156, 675, 1045, 1200
MaeIII	GTNAC	8 cut(s)	412, 713, 1318, 1474, 1591, 2047, 2137, 2617
MboII	GAAGA	7 cut(s)	447, 1924, 2705, 2750, 2812, 2875, 2883
MfeI	CAATTG	3 cut(s)	1088, 1155, 2372
MflI	RGATCY	2 cut(s)	2351, 2638
MlsI	TGGCCA	2 cut(s)	297, 958
MluNI	TGGCCA	2 cut(s)	297, 958
MlyI	GAGTC	5 cut(s)	370, 595, 959, 1481, 1838
MmeI	TCCRAC	4 cut(s)	58, 141, 1986, 2960
Mox20I	TGGCCA	2 cut(s)	297, 958
Mph1103I	ATGCAT	2 cut(s)	1006, 1537
MscI	TGGCCA	2 cut(s)	297, 958
MseI	TTAA	9 cut(s)	42, 396, 738, 1101, 1530, 1563, 1959, 1991, 2283
MslI	CAYNNNNRTG	6 cut(s)	66, 72, 359, 1170, 1652, 2054
Msp20I	TGGCCA	2 cut(s)	297, 958
MspA1I	CMGCKG	1 cut(s)	1525
MspI	CCGG	3 cut(s)	33, 111, 1494
MspR9I	CCNGG	9 cut(s)	33, 131, 955, 1400, 1752, 1860, 2243, 2684, 2717
MunI	CAATTG	3 cut(s)	1088, 1155, 2372
Mva1269I	GAATGC	2 cut(s)	620, 1006
MvaI	CCWGG	8 cut(s)	131, 955, 1400, 1752, 1860, 2243, 2684, 2717
MvnI	CGCG	3 cut(s)	735, 821, 2199
MwoI	GCNNNNNNNGC	6 cut(s)	140, 185, 221, 938, 1619, 1922
NciI	CCSGG	1 cut(s)	33
NcoI	CCATGG	1 cut(s)	804
NdeI	CATATG	2 cut(s)	985, 1927
NlaIV	GGNNCC	6 cut(s)	115, 138, 1998, 2240, 2353, 2640
NmeAIII	GCCGAG	1 cut(s)	1171
NmuCI	GTSAC	6 cut(s)	412, 713, 1474, 1591, 2047, 2617
NsiI	ATGCAT	2 cut(s)	1006, 1537
NspI	RCATGY	2 cut(s)	331, 2078
NspV	TTCGAA	1 cut(s)	151
OliI	CACNNNNGTG	1 cut(s)	2054
PaeI	GCATGC	2 cut(s)	331, 2078
PagI	TCATGA	1 cut(s)	1168
PceI	AGGCCT	1 cut(s)	1916
PciSI	GCTCTTC	1 cut(s)	2896
PctI	GAATGC	2 cut(s)	620, 1006
PflFI	GACNNNGTC	2 cut(s)	74, 272
PflMI	CCANNNNNTGG	3 cut(s)	425, 1637, 2689
PfoI	TCCNGGA	1 cut(s)	2682
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	8 cut(s)	136, 282, 343, 481, 1081, 1197, 1527, 1669
PleI	GAGTC	5 cut(s)	370, 594, 958, 1481, 1837
PpsI	GAGTC	5 cut(s)	370, 594, 958, 1481, 1837
Ppu21I	YACGTR	1 cut(s)	1201
PpuMI	RGGWCCY	2 cut(s)	2239, 2924
PshBI	ATTAAT	1 cut(s)	2283
PsiI	TTATAA	1 cut(s)	2675
Psp1406I	AACGTT	2 cut(s)	45, 1045
Psp5II	RGGWCCY	2 cut(s)	2239, 2924
Psp6I	CCWGG	8 cut(s)	129, 953, 1398, 1750, 1858, 2241, 2682, 2715
PspGI	CCWGG	8 cut(s)	129, 953, 1398, 1750, 1858, 2241, 2682, 2715
PspN4I	GGNNCC	6 cut(s)	115, 138, 1998, 2240, 2353, 2640
PspPI	GGNCC	8 cut(s)	801, 1121, 1748, 1997, 2099, 2239, 2903, 2924
PspPPI	RGGWCCY	2 cut(s)	2239, 2924
PstNI	CAGNNNCTG	2 cut(s)	1625, 2689
PsuI	RGATCY	2 cut(s)	2351, 2638
PsyI	GACNNNGTC	2 cut(s)	74, 272
RseI	CAYNNNNRTG	6 cut(s)	66, 72, 359, 1170, 1652, 2054
SapI	GCTCTTC	1 cut(s)	2896
SaqAI	TTAA	9 cut(s)	42, 396, 738, 1101, 1530, 1563, 1959, 1991, 2283
SatI	GCNGC	8 cut(s)	135, 281, 342, 480, 1080, 1196, 1526, 1668
Sau96I	GGNCC	8 cut(s)	801, 1121, 1748, 1997, 2099, 2239, 2903, 2924
ScaI	AGTACT	2 cut(s)	104, 1300
SchI	GAGTC	5 cut(s)	370, 595, 959, 1481, 1838
ScrFI	CCNGG	9 cut(s)	33, 131, 955, 1400, 1752, 1860, 2243, 2684, 2717
SexAI	ACCWGGT	1 cut(s)	1398
SfaNI	GCATC	7 cut(s)	394, 919, 1135, 1162, 1544, 2373, 2758
SfcI	CTRYAG	2 cut(s)	2094, 2224
SfuI	TTCGAA	1 cut(s)	151
SgrAI	CRCCGGYG	1 cut(s)	110
SinI	GGWCC	5 cut(s)	801, 1997, 2239, 2903, 2924
SmiMI	CAYNNNNRTG	6 cut(s)	66, 72, 359, 1170, 1652, 2054
SmlI	CTYRAG	3 cut(s)	560, 1660, 2914
SmoI	CTYRAG	3 cut(s)	560, 1660, 2914
SphI	GCATGC	2 cut(s)	331, 2078
SseBI	AGGCCT	1 cut(s)	1916
SsiI	CCGC	8 cut(s)	134, 141, 177, 199, 479, 574, 1523, 1904
SspI	AATATT	1 cut(s)	1351
SspMI	CTAG	8 cut(s)	284, 380, 627, 990, 2052, 2142, 2945, 2995
StuI	AGGCCT	1 cut(s)	1916
StyD4I	CCNGG	9 cut(s)	31, 129, 953, 1398, 1750, 1858, 2241, 2682, 2715
StyI	CCWWGG	2 cut(s)	626, 804
TaaI	ACNGT	8 cut(s)	94, 274, 1335, 1480, 1627, 1705, 1889, 2446
TaiI	ACGT	6 cut(s)	20, 48, 159, 678, 1048, 1203
TaqI	TCGA	6 cut(s)	151, 388, 519, 2218, 2536, 2988
TaqII	GACCGA	2 cut(s)	1810, 2920
TatI	WGTACW	6 cut(s)	102, 691, 1298, 1707, 1800, 2058
TauI	GCSGC	2 cut(s)	137, 482
Tru1I	TTAA	9 cut(s)	42, 396, 738, 1101, 1530, 1563, 1959, 1991, 2283
Tru9I	TTAA	9 cut(s)	42, 396, 738, 1101, 1530, 1563, 1959, 1991, 2283
TscAI	CASTG	5 cut(s)	673, 1340, 1471, 1483, 1710
TseFI	GTSAC	6 cut(s)	412, 713, 1474, 1591, 2047, 2617
TseI	GCWGC	6 cut(s)	280, 341, 1079, 1195, 1525, 1667
Tsp45I	GTSAC	6 cut(s)	412, 713, 1474, 1591, 2047, 2617
TspGWI	ACGGA	1 cut(s)	1925
TspRI	CASTG	5 cut(s)	673, 1340, 1471, 1483, 1710
Tth111I	GACNNNGTC	2 cut(s)	74, 272
Van91I	CCANNNNNTGG	3 cut(s)	425, 1637, 2689
VpaK11BI	GGWCC	5 cut(s)	801, 1997, 2239, 2903, 2924
VspI	ATTAAT	1 cut(s)	2283
XagI	CCTNNNNNAGG	1 cut(s)	2262
XapI	RAATTY	5 cut(s)	305, 860, 1094, 2087, 2214
XceI	RCATGY	2 cut(s)	331, 2078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XmaJI	CCTAGG	1 cut(s)	626
XspI	CTAG	8 cut(s)	284, 380, 627, 990, 2052, 2142, 2945, 2995
ZraI	GACGTC	1 cut(s)	676
ZrmI	AGTACT	2 cut(s)	104, 1300
Zsp2I	ATGCAT	2 cut(s)	1006, 1537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.