Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001301

Physical Location & Seq

Genomic Coordinates Reverse (-)

88571190 .. 88579624

Gene Structure 8435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG673300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3162 bp

ATGGCGACCACGACTCCTCGTTTACTCTTCTTCTTCTTCTGTGTGCTTATCTCGGTCGGGGGGATTCTAGTCGCCGACTCCAAATTTATGGTCTATAACACCTCCCAAGGGATAGTCCCCGATAAACTTAACGTCCACTTGGTCCCTCACACCCACGACGACGTCGGATGGTTGAAGACCGTTGATCAGTATTATGTTGGCTCCAACAATTCCATCCAGGGGGCTTGTGTGCAAAATGTGTTGGACTCTCTGATTCCTGCTCTGTTGGCTGACAAGAATCGGAAATTCATCTACGTTGAAATTGCCTTTTTCCAGCGCTGGTGGAGAGATCAGAGTGATGCCGTCCAGCGTATAGTCACGGACCTTGTCAGCTCGGGTCAACTAGAATTCATAAATGGGGGCATGTGTATGCATGATGAAGCAGCTACGCATTATGTTGACATGATTGATCAGACCACTCTTGGGCATCGCTTTATTAAAACGGAATTCGATGTGACTCCAAGAATTGGATGGCAAATTGATCCTTTTGGACATTCGGCTGTCCAGGCCTACTTGTTGGGAGCACAAGTTGGATTCGACTCACTTTACTTTGGTCGAATAGATTACCAGGACAGGGAAAAACGCAAAAATGACAAGAGTCTTGAGTTTGTTTGGCAGGGTTCTAAGAGTCTCGGTTTATCTGCTGAGATTTTTTCTGGTGCTTTCCCTGAGAATTATGAACCTCCTTCTGGTTTCTATTTTGAAGTTAATGATAAATCCCCAATAGTCCAGGATGACATCACTTTGTTTGATTACAATGTTCAAGAACGAGTTAATGACTTTGTTGCTGCTGCAGTATCACAGGCTAACATAACTCGAACAAATCATATTATGTGGACCATGGGAACAGACTTCAAGTATCAGTATGCACACACCTGGTTCCGTCAAATGGACAAGCTCATTCATTATGTCAACAAGGATGGACGTGTTAATGCTCTGTACTCTACTCCTTCCATATATACTGATGCAAAATATGCTACAAATGAATCTTGGCCAATCAAGACTGGTGACTTCTTTCCTTATGCAGATCGCATTAATGCTTACTGGACAGGATACTTCACAAGCAGACCAGCCTTGAAACACTACGTTAGAACAATGAGTGGCTATTATTTGTTTAATGACAGTTTTCTACTGACCTATCTGTATGTGCTGTTGGAAAATAAGGCTGCTAGGCAACTAGAATTTTTTAAAGGAAGGAGTACTTCAGGGCCCAATACGGACTCATTGGCAGATGCCTTAGCAATTGCTCAACATCATGATGCTGTCACTGGTACAGAAAAGCAGCACGTTGCCAATGATTATGCAAAAAGATTGTCAATAGGATACATGGAGTCTGAGGAACTAGTTGCAACTTCACTTGCTCACTTGGTTGAGTCTGCATCATATACTGGATCTGGAAACCCAACTACAAAGTTTCAACAGTGTCTACTTCTGAATATAAGCTATTGCCCTGCATCAGAAGTAACTTTGTCTCAGGGGAAAAAATTGATTGTCGTGGTGTACAATTCTCTTGGATGGAAGAGGGATGACACAGTCCGAATTCCTGTTATCAATGAAGATGTCATTGTTCATGATTCTGAGGGAAAAGCAATCGAGTCACAGCTTCTTCCTCTAGATGATGTCCATCTGGGCTTAAGGAACTACTATGTTAAGGCATACTTGGGTCAAACTCCAACAAAGACACCAAAGTATTGGCTTGTGTTTACAGTATCCGTACCACCACTTGGTTTTAGCACATACACTATCTCGGGTGCCGAAGGGGCAGGTGCTAGCTCAACCAGATCATCTGTATACACCTTTCAAAGCAGAGAAAAGTCGACTATTGAAGTTGGTCAAGGAAATGTGAAACTCTCTTTTTCCACAGATCAAGGCAAAATGACTAATTATGTCAATAGCAGAAGCTTGGTGGAAGAATCGGTTCAGCAGTCTTACAGCTTTTATAATGGGTATAATGGCAGTAATGATAAGGCTCCGCTGATTCCTCAGAATTCTGGGGCATATGTTTTCCGGCCTAATGGAACATTTCTCATAACACCCGAAGAAAAGGCTTCTTTGACTGTTATACGTGGACCAGTAATAGATGAAGTACATCAACAGATTAATTCGTGGATACATCAGATCACTAGACTTCACAAGGAAAAGGAGCATGTTGAAGTTGAGTTTATTGTTGGCCCTATACCTACTGATGATGGAATTGGAAAAGAAGTTGTAACTCAATTAGACACTGCCATGGCTACCAACAAAACGTTCTACACTGATTCTAATGGGCGTGATTTTATCAAAAGGATTCGCGACTATAGAACAGATTGGGACTTCAAAGTGAACCAACCTGTTGCTGGAAATTATTACCCAATTAATCTGGGGATTTACATGCAAGATAATAGGACAGAATTTTCAGTTTTGGTGGATCGGTCACTAGGGGGATCCAGCACAGTGGATGGTCAGATAGAGCTGATGCTTCACAGGAGACTACTACTTGATGACTCAAGAGGTGTTGCCGAGGCTCTAAATGAAACTGTCTGTGTTTCCGATGAATGCACAGGACTAAGAGTCCTAGGGAAATTTTACTTCAGAATTGACCCCTTGGGAGATGGTGCTAAGTGGCGTCGTTCTTTTGGCCAGGAGATATATTCACCTCTTCTCCTAGCCTTTGCTGAACAGGATGGAGATAACTGGAAGAATTCTCATGCAACCACTTTTTCTGGGATTGATTCCTCGTATAGTTTACCTGATAATGTTGCTCTTATAACTCTTCAGGAGCTTGATGATGGAAAAATTCTCATTCGCTTAGCACATTTATACGAGGTTGGAGAGGACAAGGATTTTTCTGTAATGGCAAATGTAGAGCTGAAGAAGCTTTTCCCCAGGAAGAAGATTGGCAAAGCGACAGAAATGAACTTATCAGCTAATCAAGAGAGGACAGAAATGGAGAGAAAGAGACTGGTATGGAAAAAGGCAGGGGGCTCGTCAGGAACGGAAAAGGGTGTGAGGGGTGGACCTGTTGATCCTGCAAAACTAGTTGTGGAACTTGCCCCAATGGAGATCCGCACCTTTCTCATAGACTTGGAGCAGAAGTTCTTCCACCGCCGCCATCATCATCATCATGATGTATCTGATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005766 GO:0005773 GO:0005775 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009100 GO:0009311 GO:0009313 GO:0009987 GO:0012505 GO:0015923 GO:0016052 GO:0016192 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0034774 GO:0035578 GO:0036211 GO:0036230 GO:0042119 GO:0042582 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:1901135 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

1053

Amino Acids

118.96

Weight (kDa)

5.87

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	44 - 355	7.4e-83	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	360 - 469	7.3e-18	Alpha mannosidase middle domain
Laman-like_dom	PF21260	544 - 595	5.8e-12	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	624 - 843	6.1e-47	Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2	PF17677	925 - 1031	1.1e-08	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13980 AT5G13980 AT5G13980
fragaria_vesca	FvH4_5g09420 FvH4_5g09421 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272
malus_domestica	MD06G1131600.v1.1 MD09G1002900.v1.1 MD17G1007000.v1.1
prunus_persica	Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.5G142600_v2.0.a1 Prupe.5G142600_v2.0.a1
pyrus_communis	pycom06g12300 pycom06g12310 pycom111g00240 pycom17g00260
rosa_chinensis	RchiOBHm_Chr2g0176471 RchiOBHm_Chr2g0176481 RchiOBHm_Chr7g0188771 RchiOBHm_Chr7g0188781
rosa_laevigata	RLG00000004661 RLG00000004662 RLG00000022416
rosa_multiflora	Rmu_sc0000303.1_g000057 Rmu_sc0003642.1_g000008 Rmu_sc0011904.1_g000012
rosa_roxburghii	Rroxscaffold_2G00076370 Rroxscaffold_3G00266040 Rroxscaffold_3G00266050
rosa_rugosa	Rorug02G0595000 Rorug06G0493700
rosa_samantha	Rh2AG673300 Rh2BG684600 Rh2CG647400 Rh2DG698200 Rh7AG098300 Rh7AG098400 Rh7BG099900 Rh7BG100200 Rh7CG101600 Rh7CG101700 Rh7DG100100 Rh7DG100200
rosa_wichuraiana	Rw0G010390 Rw2G055220 Rw7G008480 Rw7G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1980, 2786
AarI	CACCTGC	1 cut(s)	1793
AatII	GACGTC	1 cut(s)	165
Acc36I	ACCTGC	1 cut(s)	1793
AccB1I	GGYRCC	1 cut(s)	1790
AccB7I	CCANNNNNTGG	2 cut(s)	506, 1763
AccI	GTMKAC	3 cut(s)	1465, 1830, 1856
AccII	CGCG	1 cut(s)	2331
AciI	CCGC	4 cut(s)	2012, 3085, 3124, 3127
AclI	AACGTT	1 cut(s)	2285
AclWI	GGATC	7 cut(s)	515, 1438, 2454, 2457, 2470, 3038, 3076
AcoI	YGGCCR	2 cut(s)	1031, 2656
AcuI	CTGAAG	4 cut(s)	1227, 2593, 2777, 2909
AcyI	GRCGYC	2 cut(s)	162, 2644
AfaI	GTAC	6 cut(s)	980, 1240, 1312, 1541, 1755, 2127
AfeI	AGCGCT	1 cut(s)	317
AfiI	CCNNNNNNNGG	9 cut(s)	108, 219, 462, 506, 613, 728, 928, 1763, 2375
AflII	CTTAAG	1 cut(s)	1672
AflIII	ACRYGT	1 cut(s)	964
AhdI	GACNNNNNGTC	1 cut(s)	2588
AhlI	ACTAGT	2 cut(s)	1381, 3055
AjiI	CACGTC	1 cut(s)	965
AjnI	CCWGG	7 cut(s)	216, 543, 606, 768, 914, 2658, 2903
AjuI	GAANNNNNNNTTGG	2 cut(s)	2270, 2302
AloI	GAACNNNNNNTCC	2 cut(s)	3098, 3130
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	4 cut(s)	674, 1515, 2500, 2971
AlwI	GGATC	7 cut(s)	515, 1438, 2454, 2457, 2470, 3038, 3076
Ama87I	CYCGRG	2 cut(s)	373, 1786
Aor51HI	AGCGCT	1 cut(s)	317
AoxI	GGCC	6 cut(s)	546, 1031, 1247, 2048, 2209, 2656
ApaI	GGGCCC	1 cut(s)	1251
ApeKI	GCWGC	5 cut(s)	422, 827, 830, 1205, 1321
ArsI	GACNNNNNNTTYG	4 cut(s)	75, 107, 1337, 1369
AseI	ATTAAT	3 cut(s)	1074, 2139, 2394
Asp700I	GAANNNNTTC	3 cut(s)	1956, 2897, 3116
AspA2I	CCTAGG	1 cut(s)	2593
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	8 cut(s)	142, 361, 876, 1247, 1248, 2108, 2210, 3035
AsuHPI	GGTGA	2 cut(s)	1058, 2664
AsuNHI	GCTAGC	1 cut(s)	1808
AvaI	CYCGRG	2 cut(s)	373, 1786
AvaII	GGWCC	5 cut(s)	142, 361, 876, 2108, 3035
AvrII	CCTAGG	1 cut(s)	2593
BaeGI	GKGCMC	1 cut(s)	1251
BalI	TGGCCA	2 cut(s)	1033, 2658
BamHI	GGATCC	1 cut(s)	2462
BanI	GGYRCC	1 cut(s)	1790
BanII	GRGCYC	2 cut(s)	1251, 3005
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	5 cut(s)	434, 814, 817, 1192, 1333
BceAI	ACGGC	1 cut(s)	326
BcgI	CGANNNNNNTGC	2 cut(s)	2985, 3019
BciT130I	CCWGG	7 cut(s)	218, 545, 608, 770, 916, 2660, 2905
BciVI	GTATCC	4 cut(s)	1085, 1355, 1759, 2142
BclI	TGATCA	2 cut(s)	184, 448
BcoDI	GTCTC	4 cut(s)	674, 1515, 2500, 2971
BcuI	ACTAGT	2 cut(s)	1381, 3055
BfmI	CTRYAG	2 cut(s)	831, 2335
BfoI	RGCGCY	1 cut(s)	319
BfrI	CTTAAG	1 cut(s)	1672
BfuAI	ACCTGC	1 cut(s)	1793
BfuI	GTATCC	4 cut(s)	1085, 1355, 1759, 2142
BglI	GCCNNNNNGGC	1 cut(s)	1799
BisI	GCNGC	6 cut(s)	423, 828, 831, 1206, 1322, 3127
BlnI	CCTAGG	1 cut(s)	2593
BlpI	GCTNAGC	1 cut(s)	2827
BlsI	GCNGC	6 cut(s)	424, 829, 832, 1207, 1323, 3128
BmcAI	AGTACT	1 cut(s)	1240
Bme1390I	CCNGG	7 cut(s)	218, 545, 608, 770, 916, 2660, 2905
Bme18I	GGWCC	5 cut(s)	142, 361, 876, 2108, 3035
BmeRI	GACNNNNNGTC	1 cut(s)	2588
BmeT110I	CYCGRG	2 cut(s)	373, 1786
BmgBI	CACGTC	1 cut(s)	965
BmgT120I	GGNCC	8 cut(s)	142, 361, 876, 1247, 1248, 2108, 2210, 3035
BmiI	GGNNCC	7 cut(s)	144, 202, 920, 1249, 1792, 2010, 2464
BmrFI	CCNGG	7 cut(s)	218, 545, 608, 770, 916, 2660, 2905
BmsI	GCATC	8 cut(s)	328, 475, 994, 1261, 1288, 1427, 1502, 2484
BmtI	GCTAGC	1 cut(s)	1812
BoxI	GACNNNNGTC	1 cut(s)	636
BpiI	GAAGAC	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	1276
Bpu1102I	GCTNAGC	1 cut(s)	2827
BpuEI	CTTGAG	2 cut(s)	662, 2509
BsaAI	YACGTR	1 cut(s)	2105
BsaBI	GATNNNNATC	1 cut(s)	1662
BsaHI	GRCGYC	2 cut(s)	162, 2644
BsaJI	CCNNGG	8 cut(s)	106, 217, 879, 2268, 2538, 2593, 2622, 2903
BsaXI	ACNNNNNCTCC	7 cut(s)	28, 552, 582, 2664, 2694, 3098, 3128
Bsc4I	CCNNNNNNNGG	9 cut(s)	108, 219, 462, 506, 613, 728, 928, 1763, 2375
Bse1I	ACTGG	7 cut(s)	1048, 1088, 1312, 1432, 2111, 2717, 2985
Bse8I	GATNNNNATC	1 cut(s)	1662
BseBI	CCWGG	7 cut(s)	218, 545, 608, 770, 916, 2660, 2905
BseDI	CCNNGG	8 cut(s)	106, 217, 879, 2268, 2538, 2593, 2622, 2903
BseGI	GGATG	9 cut(s)	173, 213, 515, 778, 964, 1559, 1570, 2482, 2707
BseJI	GATNNNNATC	1 cut(s)	1662
BseLI	CCNNNNNNNGG	9 cut(s)	108, 219, 462, 506, 613, 728, 928, 1763, 2375
BseMII	CTCAG	6 cut(s)	675, 699, 1365, 1526, 1608, 2036
BseNI	ACTGG	7 cut(s)	1048, 1088, 1312, 1432, 2111, 2717, 2985
BseRI	GAGGAG	1 cut(s)	6
BseSI	GKGCMC	1 cut(s)	1251
BseXI	GCAGC	5 cut(s)	434, 814, 817, 1192, 1333
Bsh1236I	CGCG	1 cut(s)	2331
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	6 cut(s)	548, 1033, 1249, 2050, 2211, 2658
BshNI	GGYRCC	1 cut(s)	1790
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	565
BsiHKCI	CYCGRG	2 cut(s)	373, 1786
BsiSI	CCGG	1 cut(s)	2047
BslFI	GGGAC	3 cut(s)	101, 128, 2363
BslI	CCNNNNNNNGG	9 cut(s)	108, 219, 462, 506, 613, 728, 928, 1763, 2375
BsmAI	GTCTC	4 cut(s)	674, 1515, 2500, 2971
BsmFI	GGGAC	3 cut(s)	101, 128, 2363
BsmI	GAATGC	1 cut(s)	2579
BsnI	GGCC	6 cut(s)	548, 1033, 1249, 2050, 2211, 2658
BsoBI	CYCGRG	2 cut(s)	373, 1786
Bsp120I	GGGCCC	1 cut(s)	1247
Bsp1286I	GDGCHC	3 cut(s)	565, 1251, 3005
Bsp1407I	TGTACA	1 cut(s)	1539
Bsp1720I	GCTNAGC	1 cut(s)	2827
Bsp19I	CCATGG	2 cut(s)	879, 2268
Bsp68I	TCGCGA	1 cut(s)	2331
BspACI	CCGC	4 cut(s)	2012, 3085, 3124, 3127
BspANI	GGCC	6 cut(s)	548, 1033, 1249, 2050, 2211, 2658
BspCNI	CTCAG	6 cut(s)	676, 700, 1366, 1525, 1609, 2035
BspFNI	CGCG	1 cut(s)	2331
BspHI	TCATGA	3 cut(s)	1294, 1609, 3142
BspLI	GGNNCC	7 cut(s)	144, 202, 920, 1249, 1792, 2010, 2464
BspMAI	CTGCAG	1 cut(s)	835
BspMI	ACCTGC	1 cut(s)	1793
BspOI	GCTAGC	1 cut(s)	1812
BspPI	GGATC	7 cut(s)	515, 1438, 2454, 2457, 2470, 3038, 3076
BspT107I	GGYRCC	1 cut(s)	1790
BspTI	CTTAAG	1 cut(s)	1672
BsrGI	TGTACA	1 cut(s)	1539
BsrI	ACTGG	7 cut(s)	1048, 1088, 1312, 1432, 2111, 2717, 2985
BssECI	CCNNGG	8 cut(s)	106, 217, 879, 2268, 2538, 2593, 2622, 2903
BssNAI	GTATAC	1 cut(s)	1831
BssNI	GRCGYC	2 cut(s)	162, 2644
BssT1I	CCWWGG	5 cut(s)	106, 879, 2268, 2593, 2622
Bst1107I	GTATAC	1 cut(s)	1831
Bst2UI	CCWGG	7 cut(s)	218, 545, 608, 770, 916, 2660, 2905
Bst4CI	ACNGT	8 cut(s)	181, 1163, 1461, 1573, 1747, 2098, 2473, 2557
Bst6I	CTCTTC	4 cut(s)	32, 1553, 2682, 2796
BstACI	GRCGYC	2 cut(s)	162, 2644
BstAFI	CTTAAG	1 cut(s)	1672
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstAUI	TGTACA	1 cut(s)	1539
BstBAI	YACGTR	1 cut(s)	2105
BstC8I	GCNNGC	1 cut(s)	1810
BstDSI	CCRYGG	2 cut(s)	879, 2268
BstF5I	GGATG	9 cut(s)	173, 213, 515, 778, 964, 1559, 1570, 2482, 2707
BstFNI	CGCG	1 cut(s)	2331
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstMAI	GTCTC	4 cut(s)	674, 1515, 2500, 2971
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	5 cut(s)	266, 545, 1013, 1799, 2893
BstNI	CCWGG	7 cut(s)	218, 545, 608, 770, 916, 2660, 2905
BstNSI	RCATGY	3 cut(s)	406, 2189, 2413
BstPAI	GACNNNNGTC	1 cut(s)	636
BstSCI	CCNGG	7 cut(s)	216, 543, 606, 768, 914, 2658, 2903
BstSFI	CTRYAG	2 cut(s)	831, 2335
BstSLI	GKGCMC	1 cut(s)	1251
BstUI	CGCG	1 cut(s)	2331
BstV1I	GCAGC	5 cut(s)	434, 814, 817, 1192, 1333
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	3 cut(s)	1430, 2462, 3081
BstXI	CCANNNNNNTGG	3 cut(s)	88, 1731, 2473
BstYI	RGATCY	3 cut(s)	1430, 2462, 3081
BstZ17I	GTATAC	1 cut(s)	1831
BsuI	GTATCC	4 cut(s)	1085, 1355, 1759, 2142
BsuRI	GGCC	6 cut(s)	548, 1033, 1249, 2050, 2211, 2658
BtgI	CCRYGG	2 cut(s)	879, 2268
BtgZI	GCGATG	1 cut(s)	452
BtrI	CACGTC	1 cut(s)	965
BtsCI	GGATG	9 cut(s)	173, 213, 515, 778, 964, 1559, 1570, 2482, 2707
BtsI	GCAGTG	1 cut(s)	2262
BtsIMutI	CAGTG	5 cut(s)	1305, 1466, 2262, 2292, 2478
BtuMI	TCGCGA	1 cut(s)	2331
BveI	ACCTGC	1 cut(s)	1793
Cac8I	GCNNGC	1 cut(s)	1810
CciI	TCATGA	3 cut(s)	1294, 1609, 3142
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	8 cut(s)	142, 361, 876, 1247, 1248, 2108, 2210, 3035
CseI	GACGC	1 cut(s)	2633
CsiI	ACCWGGT	1 cut(s)	914
Csp6I	GTAC	6 cut(s)	979, 1239, 1311, 1540, 1754, 2126
CviQI	GTAC	6 cut(s)	979, 1239, 1311, 1540, 1754, 2126
DraI	TTTAAA	1 cut(s)	1228
DriI	GACNNNNNGTC	1 cut(s)	2588
EaeI	YGGCCR	2 cut(s)	1031, 2656
Eam1104I	CTCTTC	4 cut(s)	32, 1553, 2682, 2796
Eam1105I	GACNNNNNGTC	1 cut(s)	2588
EarI	CTCTTC	4 cut(s)	32, 1553, 2682, 2796
Eco130I	CCWWGG	5 cut(s)	106, 879, 2268, 2593, 2622
Eco147I	AGGCCT	1 cut(s)	548
Eco24I	GRGCYC	2 cut(s)	1251, 3005
Eco47I	GGWCC	5 cut(s)	142, 361, 876, 2108, 3035
Eco47III	AGCGCT	1 cut(s)	317
Eco57I	CTGAAG	4 cut(s)	1227, 2593, 2777, 2909
Eco88I	CYCGRG	2 cut(s)	373, 1786
EcoO109I	RGGNCCY	1 cut(s)	1247
EcoRI	GAATTC	5 cut(s)	386, 485, 1578, 2026, 2719
EcoRII	CCWGG	7 cut(s)	216, 543, 606, 768, 914, 2658, 2903
EcoT14I	CCWWGG	5 cut(s)	106, 879, 2268, 2593, 2622
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	2 cut(s)	1251, 3005
ErhI	CCWWGG	5 cut(s)	106, 879, 2268, 2593, 2622
FalI	AAGNNNNNCTT	4 cut(s)	1225, 1257, 1682, 1714
FaqI	GGGAC	3 cut(s)	101, 128, 2363
FauNDI	CATATG	1 cut(s)	2038
FbaI	TGATCA	2 cut(s)	184, 448
FblI	GTMKAC	3 cut(s)	1465, 1830, 1856
Fnu4HI	GCNGC	6 cut(s)	423, 828, 831, 1206, 1322, 3127
FokI	GGATG	9 cut(s)	180, 200, 522, 785, 971, 1566, 1577, 2489, 2714
FriOI	GRGCYC	2 cut(s)	1251, 3005
Fsp4HI	GCNGC	6 cut(s)	423, 828, 831, 1206, 1322, 3127
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	6 cut(s)	423, 828, 831, 1206, 1322, 3127
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	6 cut(s)	548, 1033, 1249, 2050, 2211, 2658
HapII	CCGG	1 cut(s)	2047
HgaI	GACGC	1 cut(s)	2633
HhaI	GCGC	1 cut(s)	318
Hin1I	GRCGYC	2 cut(s)	162, 2644
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	4 cut(s)	380, 439, 952, 1857
HindII	GTYRAC	4 cut(s)	380, 439, 952, 1857
HindIII	AAGCTT	2 cut(s)	1939, 2894
HpaII	CCGG	1 cut(s)	2047
HphI	GGTGA	2 cut(s)	1058, 2664
Hpy99I	CGWCG	4 cut(s)	161, 164, 167, 2649
HpyAV	CCTTC	4 cut(s)	735, 999, 1227, 1790
HpyCH4III	ACNGT	8 cut(s)	181, 1163, 1461, 1573, 1747, 2098, 2473, 2557
HpyCH4IV	ACGT	8 cut(s)	132, 162, 294, 964, 1125, 1326, 2104, 2285
HpyF10VI	GCNNNNNNNGC	5 cut(s)	266, 545, 1013, 1799, 2893
HpySE526I	ACGT	8 cut(s)	132, 162, 294, 964, 1125, 1326, 2104, 2285
Hsp92I	GRCGYC	2 cut(s)	162, 2644
HspAI	GCGC	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	184, 448
LmnI	GCTCC	6 cut(s)	206, 560, 2014, 2182, 2797, 3106
Lsp1109I	GCAGC	5 cut(s)	434, 814, 817, 1192, 1333
LweI	GCATC	8 cut(s)	328, 475, 994, 1261, 1288, 1427, 1502, 2484
MabI	ACCWGGT	1 cut(s)	914
MaeII	ACGT	8 cut(s)	132, 162, 294, 964, 1125, 1326, 2104, 2285
MaeIII	GTNAC	8 cut(s)	355, 493, 1046, 1303, 1501, 1635, 2248, 2451
MfeI	CAATTG	1 cut(s)	1281
MflI	RGATCY	3 cut(s)	1430, 2462, 3081
MhlI	GDGCHC	3 cut(s)	565, 1251, 3005
MlsI	TGGCCA	2 cut(s)	1033, 2658
MluNI	TGGCCA	2 cut(s)	1033, 2658
MmeI	TCCRAC	7 cut(s)	145, 222, 228, 550, 1173, 1736, 2827
Mox20I	TGGCCA	2 cut(s)	1033, 2658
Mph1103I	ATGCAT	1 cut(s)	414
MroXI	GAANNNNTTC	3 cut(s)	1956, 2897, 3116
MscI	TGGCCA	2 cut(s)	1033, 2658
MslI	CAYNNNNRTG	5 cut(s)	407, 1296, 2267, 3141, 3144
Msp20I	TGGCCA	2 cut(s)	1033, 2658
MspA1I	CMGCKG	1 cut(s)	2014
MspCI	CTTAAG	1 cut(s)	1672
MspI	CCGG	1 cut(s)	2047
MspR9I	CCNGG	7 cut(s)	218, 545, 608, 770, 916, 2660, 2905
MunI	CAATTG	1 cut(s)	1281
Mva1269I	GAATGC	1 cut(s)	2579
MvaI	CCWGG	7 cut(s)	218, 545, 608, 770, 916, 2660, 2905
MvnI	CGCG	1 cut(s)	2331
MwoI	GCNNNNNNNGC	5 cut(s)	266, 545, 1013, 1799, 2893
NcoI	CCATGG	2 cut(s)	879, 2268
NdeI	CATATG	1 cut(s)	2038
NheI	GCTAGC	1 cut(s)	1808
NlaIV	GGNNCC	7 cut(s)	144, 202, 920, 1249, 1792, 2010, 2464
NmeAIII	GCCGAG	1 cut(s)	2563
NmuCI	GTSAC	6 cut(s)	355, 493, 1046, 1303, 1635, 2451
NruI	TCGCGA	1 cut(s)	2331
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	3 cut(s)	406, 2189, 2413
PagI	TCATGA	3 cut(s)	1294, 1609, 3142
PaqCI	CACCTGC	1 cut(s)	1793
PceI	AGGCCT	1 cut(s)	548
PctI	GAATGC	1 cut(s)	2579
PdmI	GAANNNNTTC	3 cut(s)	1956, 2897, 3116
PflFI	GACNNNGTC	3 cut(s)	161, 365, 1571
PflMI	CCANNNNNTGG	2 cut(s)	506, 1763
PfoI	TCCNGGA	1 cut(s)	768
PkrI	GCNGC	6 cut(s)	424, 829, 832, 1207, 1323, 3128
Ppu21I	YACGTR	1 cut(s)	2105
PshAI	GACNNNNGTC	1 cut(s)	636
PshBI	ATTAAT	3 cut(s)	1074, 2139, 2394
PsiI	TTATAA	2 cut(s)	1980, 2786
Psp1406I	AACGTT	1 cut(s)	2285
Psp6I	CCWGG	7 cut(s)	216, 543, 606, 768, 914, 2658, 2903
PspGI	CCWGG	7 cut(s)	216, 543, 606, 768, 914, 2658, 2903
PspN4I	GGNNCC	7 cut(s)	144, 202, 920, 1249, 1792, 2010, 2464
PspOMI	GGGCCC	1 cut(s)	1247
PspPI	GGNCC	8 cut(s)	142, 361, 876, 1247, 1248, 2108, 2210, 3035
PstI	CTGCAG	1 cut(s)	835
PsuI	RGATCY	3 cut(s)	1430, 2462, 3081
PsyI	GACNNNGTC	3 cut(s)	161, 365, 1571
RruI	TCGCGA	1 cut(s)	2331
RsaI	GTAC	6 cut(s)	980, 1240, 1312, 1541, 1755, 2127
RsaNI	GTAC	6 cut(s)	979, 1239, 1311, 1540, 1754, 2126
RseI	CAYNNNNRTG	5 cut(s)	407, 1296, 2267, 3141, 3144
SalI	GTCGAC	1 cut(s)	1855
SatI	GCNGC	6 cut(s)	423, 828, 831, 1206, 1322, 3127
Sau96I	GGNCC	8 cut(s)	142, 361, 876, 1247, 1248, 2108, 2210, 3035
ScaI	AGTACT	1 cut(s)	1240
ScrFI	CCNGG	7 cut(s)	218, 545, 608, 770, 916, 2660, 2905
SduI	GDGCHC	3 cut(s)	565, 1251, 3005
SexAI	ACCWGGT	1 cut(s)	914
SfaNI	GCATC	8 cut(s)	328, 475, 994, 1261, 1288, 1427, 1502, 2484
SfcI	CTRYAG	2 cut(s)	831, 2335
SinI	GGWCC	5 cut(s)	142, 361, 876, 2108, 3035
SmiMI	CAYNNNNRTG	5 cut(s)	407, 1296, 2267, 3141, 3144
SmlI	CTYRAG	3 cut(s)	641, 1672, 2524
SmoI	CTYRAG	3 cut(s)	641, 1672, 2524
SpeI	ACTAGT	2 cut(s)	1381, 3055
SseBI	AGGCCT	1 cut(s)	548
SsiI	CCGC	4 cut(s)	2012, 3085, 3124, 3127
StuI	AGGCCT	1 cut(s)	548
StyD4I	CCNGG	7 cut(s)	216, 543, 606, 768, 914, 2658, 2903
StyI	CCWWGG	5 cut(s)	106, 879, 2268, 2593, 2622
TaaI	ACNGT	8 cut(s)	181, 1163, 1461, 1573, 1747, 2098, 2473, 2557
TaiI	ACGT	8 cut(s)	135, 165, 297, 967, 1128, 1329, 2107, 2288
TaqI	TCGA	6 cut(s)	489, 576, 595, 856, 1632, 1856
TaqII	GACCGA	2 cut(s)	43, 2439
TatI	WGTACW	4 cut(s)	978, 1238, 1539, 2125
TauI	GCSGC	1 cut(s)	3129
TscAI	CASTG	5 cut(s)	1312, 1466, 2269, 2299, 2478
TseFI	GTSAC	6 cut(s)	355, 493, 1046, 1303, 1635, 2451
TseI	GCWGC	5 cut(s)	422, 827, 830, 1205, 1321
Tsp45I	GTSAC	6 cut(s)	355, 493, 1046, 1303, 1635, 2451
TspGWI	ACGGA	6 cut(s)	374, 497, 911, 1271, 1741, 3029
TspRI	CASTG	5 cut(s)	1312, 1466, 2269, 2299, 2478
Tth111I	GACNNNGTC	3 cut(s)	161, 365, 1571
Van91I	CCANNNNNTGG	2 cut(s)	506, 1763
Vha464I	CTTAAG	1 cut(s)	1672
VpaK11BI	GGWCC	5 cut(s)	142, 361, 876, 2108, 3035
VspI	ATTAAT	3 cut(s)	1074, 2139, 2394
XbaI	TCTAGA	1 cut(s)	1651
XceI	RCATGY	3 cut(s)	406, 2189, 2413
XcmI	CCANNNNNNNNNTGG	2 cut(s)	507, 2372
XmaJI	CCTAGG	1 cut(s)	2593
XmiI	GTMKAC	3 cut(s)	1465, 1830, 1856
XmnI	GAANNNNTTC	3 cut(s)	1956, 2897, 3116
ZraI	GACGTC	1 cut(s)	163
ZrmI	AGTACT	1 cut(s)	1240
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.