Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001301

Physical Location & Seq

Genomic Coordinates Reverse (-)

91380524 .. 91388430

Gene Structure 7907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG698200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3102 bp

ATGGCGACCACGACTCCTGGTTTACTCTTCTTCTTCTGTGTGCTTATCTCGGTCGGAATTCTAGTCGCCGACTCCAAATTTATGGTCTATAACACCTCCCAAGGGATAGTCGCCGGTAAACTTAACGTCCACTTGGTCCCTCACACCCACGACGACGTCGGATGGTTGAAGACCGTTGATCAGTATTATGTTGGCTCCAACAATTCCATCCAGGGGGCTTGTGTGCAAAATGTGTTGGACTCTTTGATTCCTGCTCTGTTGGCTGACAAGAATCGGAAATTCATCTACGTTGAAATTGCCTTTTTCCAGCGCTGGTGGAGAGATCAGAGTGATGCCGTCCAGCGTATAGTCACGGACCTTGTCAGCTCGGGTCAACTGGAATTCATAAATGGGGGCATGTGTATGCATGATGAAGCAGCTACGCATTATGTTGACATGATTGATCAGACCACTCTTGGGCATCGCTTTATTAAAACGGAATTCGATGTGACTCCAAGAATTGGATGGCAAATTGATCCTTTTGGACATTCGGCTGTCCAGGCCTACTTGTTGGGAGCACAAGTTGGATTCGACTCACTTTACTTTGGTCGAATAGATTACCAGGACAGGGAAAAACGCAAAAATGACAAGAGTCTGGAGTTTGTTTGGCAGGGTTCTAAGAGTCTCGGTTCATCTGCTGAGATTTTTTCTGGTGCTTTCCCTGAGAATTATGAACCTCCTTCTGGTTTCTATTTTGAAGTTAATGATAAATCCCCAATAGTCCAGGATGACATCACTTTGTTTGATTACAATGTTCAAGAACGAGTTAATGACTTTGTTGCTGCTGCAGTATCACAGGCTAACATAACTCGAACAAATCATATTATGTGGACCATGGGAACAGACTTCAAGTATCAGTATGCACACACCTGGTTCCGTCAAATGGACAAGCTCATTCATTATGTCAACAAGGATGGACGTGTTAATGCTCTGTACTCTACTCCTTCCATATATACTGATGCAAAATATGCTACAAATGAATCTTGGCCAATCAAGACTGGTGACTTCTTTCCTTATGCAGATCGCATTAATGCTTACTGGACAGGATACTTCACAAGCAGACCAGCCTTGAAACACTACGTTAGAACAATGAGTGGCTATTATTTGGCTGCTAGGCAACTAGAATTTTTTAAAGGAAGGAGTACTTCAGGGCCCAATACGGACTCATTGGCAGATGCCTTAGCAATTGCTCAACATCATGATGCTGTCACTGGTACAGAAAAGCAGCACGTTGCCAATGATTATGCAAAAAGATTGTCAATAGGATACATGGAGTCTGAGCAACTAGTTGCAACTTCACTTGCTCACTTGGTTGAGTCTGCATCATATACTGGATCTGGAAACCCAACTACAAAGTTTCAACAGTGTCTACTTCTGAATATAAGCTATTGCCCTGCATCAGAAGTAACTTTGTCTCAGGGGAAAAAATTGATTGTCGTGGTGTACAATTCTCTTGGATGGAAGAGGGATGACACAGTCCGAATTCCTGTTATCAATGAAGATGTCATTGTTCATGATTCTGAGGGAAAAGCAATCGAGTCACAGCTTCTTCCTCTAGATGATGTCCATCTGGGCTTAAGGAACTACTATGTTAAGGCATACTTGGGTCAAACTCCAACAAAGACACCAAAGTATTGGCTTGTGTTTACAGTATCCGTACCACCACTTGGTTTTAGCACATACACTATCTCGGGTGCCGAAGGGGCAGGTGCTAGCTCAACCAGATCATCTGTATACACCTTTCAAAGCAGAGAAAAGTCGACTATTGAAGTTGGTCAAGGAAATGTGAAACTCTCTTTTTCCACAGATCAAGGCAAAATGACTAATTATGTCAATAGCAGAAGCTTGGTGGAAGAATCGGTTCAGCAGTCTTACAGCTTTTATAATGGGTATAATGGCAGTAATGATAAGGCTCCGCTGATTCCTCAGAATTCTGGGGCATATGTTTTCCGGCCTAATGGAACATTTCTCATAACACCCGAAGAAAAGGCTTCTTTGACTGTTATACGTGGACCAGTAATAGATGAAGTACATCAACAGATTAATTCGTGGATACATCAGATCACTAGACTTCACAAGGAAAAGGAGCATGTTGAAGTTGAGTTTATTGTTGGCCCTATACCTACTGATGATGGAATTGGAAAAGAAGTTGTAACTCAATTAGACACTGCCATGGCTACCAACAAAACGTTCTACACTGATTCTAATGGGCGTGATTTTATCAAAAGGATTCGCGACTATAGAACAGATTGGGACTTCAAAGTGAACCAACCTGTTGCTGGAAATTATTACCCAATTAATCTTGGGATTTACATGCAAGATAATAGGACAGAATTTTCACTTTTGGTGGATCGGTCACTAGGGGGATCCAGCACAGTGGATGGTCAGATAGAGCTGATGCTTCACAGGAGACTACTACTTGATGACTCAAGAGGTGTTGCCGAGGCTCTAAATGAAACTGTCTGTGTTTCCGATGAATGCACAGGACTAAGAGTCCTAGGGAAATTTTACTTCAGAATTGACCCCTTGGGAGATGGTGCTAAGTGGCGTCGTTCTTTTGGCCAGGAGATATATTCACCTCTTCTCCTAGCCTTTGCTGAACAGGATGGAGATAACTGGAAGAATTCTCATGCAACCACTTTTTCTGGGATTGATTCCTCGTATAGTTTACCTGATAATGTTGCTCTTATAACTCTTCAGGAGCTTGATGATGGAAAAATTCTCATTCGCTTAGCACATTTATACGAGGTTGGAGAGGACAAGGATTTTTCTGTAATGGCAAATGTAGAGCTGAAGAAGCTTTTCCCCAGGAAGAAGATTGGCAAAGCGACAGAAATGAACTTATCAGCTAATCAAGAAAGGACAGAAATGGAGAGAAAGAGACTGGTATGGAAAAAGGAAGGGGGCTCGTCAGGAACGGAAAAGGGTGTGAGGGGTGGACCTGTTGATCCTGCAAAACTAGTTGTGGAACTTGCCCCAATGGAAATCCGCACCTTTCTCATTGACTTGGAGCAGAAGTTCTTCCACCGCCGCCATCATCATCATGATGTATCTGATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005766 GO:0005773 GO:0005775 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009100 GO:0009311 GO:0009313 GO:0009987 GO:0012505 GO:0015923 GO:0016052 GO:0016192 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0034774 GO:0035578 GO:0036211 GO:0036230 GO:0042119 GO:0042582 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:1901135 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

1033

Amino Acids

116.41

Weight (kDa)

5.88

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	42 - 353	8.1e-83	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	358 - 450	3.3e-21	Alpha mannosidase middle domain
Laman-like_dom	PF21260	525 - 576	5.6e-12	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	605 - 824	8.8e-47	Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2	PF17677	906 - 1012	1e-08	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13980 AT5G13980 AT5G13980
fragaria_vesca	FvH4_5g09420 FvH4_5g09421 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272
malus_domestica	MD06G1131600.v1.1 MD09G1002900.v1.1 MD17G1007000.v1.1
prunus_persica	Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.5G142600_v2.0.a1 Prupe.5G142600_v2.0.a1
pyrus_communis	pycom06g12300 pycom06g12310 pycom111g00240 pycom17g00260
rosa_chinensis	RchiOBHm_Chr2g0176471 RchiOBHm_Chr2g0176481 RchiOBHm_Chr7g0188771 RchiOBHm_Chr7g0188781
rosa_laevigata	RLG00000004661 RLG00000004662 RLG00000022416
rosa_multiflora	Rmu_sc0000303.1_g000057 Rmu_sc0003642.1_g000008 Rmu_sc0011904.1_g000012
rosa_roxburghii	Rroxscaffold_2G00076370 Rroxscaffold_3G00266040 Rroxscaffold_3G00266050
rosa_rugosa	Rorug02G0595000 Rorug06G0493700
rosa_samantha	Rh2AG673300 Rh2BG684600 Rh2CG647400 Rh2DG698200 Rh7AG098300 Rh7AG098400 Rh7BG099900 Rh7BG100200 Rh7CG101600 Rh7CG101700 Rh7DG100100 Rh7DG100200
rosa_wichuraiana	Rw0G010390 Rw2G055220 Rw7G008480 Rw7G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1923, 2729
AarI	CACCTGC	1 cut(s)	1736
AatII	GACGTC	1 cut(s)	159
Acc36I	ACCTGC	1 cut(s)	1736
AccB1I	GGYRCC	1 cut(s)	1733
AccB7I	CCANNNNNTGG	2 cut(s)	500, 1706
AccI	GTMKAC	3 cut(s)	1408, 1773, 1799
AccII	CGCG	1 cut(s)	2274
AciI	CCGC	4 cut(s)	1955, 3028, 3067, 3070
AclI	AACGTT	1 cut(s)	2228
AclWI	GGATC	6 cut(s)	509, 1381, 2397, 2400, 2413, 2981
AcoI	YGGCCR	2 cut(s)	1025, 2599
AcuI	CTGAAG	4 cut(s)	1170, 2536, 2720, 2852
AcyI	GRCGYC	2 cut(s)	156, 2587
AfaI	GTAC	6 cut(s)	974, 1183, 1255, 1484, 1698, 2070
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	9 cut(s)	102, 213, 456, 500, 607, 722, 922, 1706, 2318
AflII	CTTAAG	1 cut(s)	1615
AflIII	ACRYGT	1 cut(s)	958
AhdI	GACNNNNNGTC	1 cut(s)	2531
AhlI	ACTAGT	2 cut(s)	1324, 2998
AjiI	CACGTC	1 cut(s)	959
AjnI	CCWGG	8 cut(s)	16, 210, 537, 600, 762, 908, 2601, 2846
AjuI	GAANNNNNNNTTGG	2 cut(s)	2213, 2245
AloI	GAACNNNNNNTCC	2 cut(s)	3041, 3073
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	4 cut(s)	668, 1458, 2443, 2914
AlwI	GGATC	6 cut(s)	509, 1381, 2397, 2400, 2413, 2981
Ama87I	CYCGRG	2 cut(s)	367, 1729
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	6 cut(s)	540, 1025, 1190, 1991, 2152, 2599
ApaI	GGGCCC	1 cut(s)	1194
ApeKI	GCWGC	5 cut(s)	416, 821, 824, 1148, 1264
ArsI	GACNNNNNNTTYG	4 cut(s)	69, 101, 1280, 1312
AseI	ATTAAT	3 cut(s)	1068, 2082, 2337
Asp700I	GAANNNNTTC	3 cut(s)	1899, 2840, 3059
AspA2I	CCTAGG	1 cut(s)	2536
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	8 cut(s)	136, 355, 870, 1190, 1191, 2051, 2153, 2978
AsuHPI	GGTGA	2 cut(s)	1052, 2607
AsuNHI	GCTAGC	1 cut(s)	1751
AvaI	CYCGRG	2 cut(s)	367, 1729
AvaII	GGWCC	5 cut(s)	136, 355, 870, 2051, 2978
AvrII	CCTAGG	1 cut(s)	2536
BaeGI	GKGCMC	1 cut(s)	1194
BalI	TGGCCA	2 cut(s)	1027, 2601
BamHI	GGATCC	1 cut(s)	2405
BanI	GGYRCC	1 cut(s)	1733
BanII	GRGCYC	2 cut(s)	1194, 2948
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	5 cut(s)	428, 808, 811, 1135, 1276
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	8 cut(s)	18, 212, 539, 602, 764, 910, 2603, 2848
BciVI	GTATCC	4 cut(s)	1079, 1298, 1702, 2085
BclI	TGATCA	2 cut(s)	178, 442
BcoDI	GTCTC	4 cut(s)	668, 1458, 2443, 2914
BcuI	ACTAGT	2 cut(s)	1324, 2998
BfmI	CTRYAG	2 cut(s)	825, 2278
BfoI	RGCGCY	1 cut(s)	313
BfrI	CTTAAG	1 cut(s)	1615
BfuAI	ACCTGC	1 cut(s)	1736
BfuI	GTATCC	4 cut(s)	1079, 1298, 1702, 2085
BglI	GCCNNNNNGGC	1 cut(s)	1742
BisI	GCNGC	6 cut(s)	417, 822, 825, 1149, 1265, 3070
BlnI	CCTAGG	1 cut(s)	2536
BlpI	GCTNAGC	1 cut(s)	2770
BlsI	GCNGC	6 cut(s)	418, 823, 826, 1150, 1266, 3071
BmcAI	AGTACT	1 cut(s)	1183
Bme1390I	CCNGG	8 cut(s)	18, 212, 539, 602, 764, 910, 2603, 2848
Bme18I	GGWCC	5 cut(s)	136, 355, 870, 2051, 2978
BmeRI	GACNNNNNGTC	1 cut(s)	2531
BmeT110I	CYCGRG	2 cut(s)	367, 1729
BmgBI	CACGTC	1 cut(s)	959
BmgT120I	GGNCC	8 cut(s)	136, 355, 870, 1190, 1191, 2051, 2153, 2978
BmiI	GGNNCC	7 cut(s)	138, 196, 914, 1192, 1735, 1953, 2407
BmrFI	CCNGG	8 cut(s)	18, 212, 539, 602, 764, 910, 2603, 2848
BmsI	GCATC	8 cut(s)	322, 469, 988, 1204, 1231, 1370, 1445, 2427
BmtI	GCTAGC	1 cut(s)	1755
BoxI	GACNNNNGTC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	656
Bpu10I	CCTNAGC	1 cut(s)	1219
Bpu1102I	GCTNAGC	1 cut(s)	2770
BpuEI	CTTGAG	1 cut(s)	2452
BsaAI	YACGTR	1 cut(s)	2048
BsaBI	GATNNNNATC	1 cut(s)	1605
BsaHI	GRCGYC	2 cut(s)	156, 2587
BsaJI	CCNNGG	8 cut(s)	100, 211, 873, 2211, 2481, 2536, 2565, 2846
BsaXI	ACNNNNNCTCC	7 cut(s)	28, 546, 576, 2607, 2637, 3041, 3071
Bsc4I	CCNNNNNNNGG	9 cut(s)	102, 213, 456, 500, 607, 722, 922, 1706, 2318
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	8 cut(s)	381, 1042, 1082, 1255, 1375, 2054, 2660, 2928
Bse8I	GATNNNNATC	1 cut(s)	1605
BseBI	CCWGG	8 cut(s)	18, 212, 539, 602, 764, 910, 2603, 2848
BseDI	CCNNGG	8 cut(s)	100, 211, 873, 2211, 2481, 2536, 2565, 2846
BseGI	GGATG	9 cut(s)	167, 207, 509, 772, 958, 1502, 1513, 2425, 2650
BseJI	GATNNNNATC	1 cut(s)	1605
BseLI	CCNNNNNNNGG	9 cut(s)	102, 213, 456, 500, 607, 722, 922, 1706, 2318
BseMII	CTCAG	6 cut(s)	669, 693, 1308, 1469, 1551, 1979
BseNI	ACTGG	8 cut(s)	381, 1042, 1082, 1255, 1375, 2054, 2660, 2928
BseSI	GKGCMC	1 cut(s)	1194
BseXI	GCAGC	5 cut(s)	428, 808, 811, 1135, 1276
Bsh1236I	CGCG	1 cut(s)	2274
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	6 cut(s)	542, 1027, 1192, 1993, 2154, 2601
BshNI	GGYRCC	1 cut(s)	1733
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	2 cut(s)	367, 1729
BsiSI	CCGG	2 cut(s)	114, 1990
BslFI	GGGAC	2 cut(s)	122, 2306
BslI	CCNNNNNNNGG	9 cut(s)	102, 213, 456, 500, 607, 722, 922, 1706, 2318
BsmAI	GTCTC	4 cut(s)	668, 1458, 2443, 2914
BsmFI	GGGAC	2 cut(s)	122, 2306
BsmI	GAATGC	1 cut(s)	2522
BsnI	GGCC	6 cut(s)	542, 1027, 1192, 1993, 2154, 2601
BsoBI	CYCGRG	2 cut(s)	367, 1729
Bsp120I	GGGCCC	1 cut(s)	1190
Bsp1286I	GDGCHC	3 cut(s)	559, 1194, 2948
Bsp1407I	TGTACA	1 cut(s)	1482
Bsp1720I	GCTNAGC	1 cut(s)	2770
Bsp19I	CCATGG	2 cut(s)	873, 2211
Bsp68I	TCGCGA	1 cut(s)	2274
BspACI	CCGC	4 cut(s)	1955, 3028, 3067, 3070
BspANI	GGCC	6 cut(s)	542, 1027, 1192, 1993, 2154, 2601
BspCNI	CTCAG	6 cut(s)	670, 694, 1309, 1468, 1552, 1978
BspFNI	CGCG	1 cut(s)	2274
BspHI	TCATGA	3 cut(s)	1237, 1552, 3082
BspLI	GGNNCC	7 cut(s)	138, 196, 914, 1192, 1735, 1953, 2407
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	1 cut(s)	1736
BspOI	GCTAGC	1 cut(s)	1755
BspPI	GGATC	6 cut(s)	509, 1381, 2397, 2400, 2413, 2981
BspT107I	GGYRCC	1 cut(s)	1733
BspTI	CTTAAG	1 cut(s)	1615
BsrFI	RCCGGY	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	1482
BsrI	ACTGG	8 cut(s)	381, 1042, 1082, 1255, 1375, 2054, 2660, 2928
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	8 cut(s)	100, 211, 873, 2211, 2481, 2536, 2565, 2846
BssNAI	GTATAC	1 cut(s)	1774
BssNI	GRCGYC	2 cut(s)	156, 2587
BssT1I	CCWWGG	5 cut(s)	100, 873, 2211, 2536, 2565
Bst1107I	GTATAC	1 cut(s)	1774
Bst2UI	CCWGG	8 cut(s)	18, 212, 539, 602, 764, 910, 2603, 2848
Bst4CI	ACNGT	7 cut(s)	175, 1404, 1516, 1690, 2041, 2416, 2500
Bst6I	CTCTTC	4 cut(s)	32, 1496, 2625, 2739
BstACI	GRCGYC	2 cut(s)	156, 2587
BstAFI	CTTAAG	1 cut(s)	1615
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstAUI	TGTACA	1 cut(s)	1482
BstBAI	YACGTR	1 cut(s)	2048
BstC8I	GCNNGC	1 cut(s)	1753
BstDSI	CCRYGG	2 cut(s)	873, 2211
BstF5I	GGATG	9 cut(s)	167, 207, 509, 772, 958, 1502, 1513, 2425, 2650
BstFNI	CGCG	1 cut(s)	2274
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstMAI	GTCTC	4 cut(s)	668, 1458, 2443, 2914
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 539, 1007, 1742, 2836
BstNI	CCWGG	8 cut(s)	18, 212, 539, 602, 764, 910, 2603, 2848
BstNSI	RCATGY	3 cut(s)	400, 2132, 2356
BstPAI	GACNNNNGTC	1 cut(s)	630
BstSCI	CCNGG	8 cut(s)	16, 210, 537, 600, 762, 908, 2601, 2846
BstSFI	CTRYAG	2 cut(s)	825, 2278
BstSLI	GKGCMC	1 cut(s)	1194
BstUI	CGCG	1 cut(s)	2274
BstV1I	GCAGC	5 cut(s)	428, 808, 811, 1135, 1276
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	2 cut(s)	1373, 2405
BstXI	CCANNNNNNTGG	3 cut(s)	82, 1674, 2416
BstYI	RGATCY	2 cut(s)	1373, 2405
BstZ17I	GTATAC	1 cut(s)	1774
BsuI	GTATCC	4 cut(s)	1079, 1298, 1702, 2085
BsuRI	GGCC	6 cut(s)	542, 1027, 1192, 1993, 2154, 2601
BtgI	CCRYGG	2 cut(s)	873, 2211
BtgZI	GCGATG	1 cut(s)	446
BtrI	CACGTC	1 cut(s)	959
BtsCI	GGATG	9 cut(s)	167, 207, 509, 772, 958, 1502, 1513, 2425, 2650
BtsI	GCAGTG	1 cut(s)	2205
BtsIMutI	CAGTG	5 cut(s)	1248, 1409, 2205, 2235, 2421
BtuMI	TCGCGA	1 cut(s)	2274
BveI	ACCTGC	1 cut(s)	1736
Cac8I	GCNNGC	1 cut(s)	1753
CciI	TCATGA	3 cut(s)	1237, 1552, 3082
CfoI	GCGC	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	8 cut(s)	136, 355, 870, 1190, 1191, 2051, 2153, 2978
CseI	GACGC	1 cut(s)	2576
CsiI	ACCWGGT	1 cut(s)	908
Csp6I	GTAC	6 cut(s)	973, 1182, 1254, 1483, 1697, 2069
CviQI	GTAC	6 cut(s)	973, 1182, 1254, 1483, 1697, 2069
DraI	TTTAAA	1 cut(s)	1171
DriI	GACNNNNNGTC	1 cut(s)	2531
EaeI	YGGCCR	2 cut(s)	1025, 2599
Eam1104I	CTCTTC	4 cut(s)	32, 1496, 2625, 2739
Eam1105I	GACNNNNNGTC	1 cut(s)	2531
EarI	CTCTTC	4 cut(s)	32, 1496, 2625, 2739
Eco130I	CCWWGG	5 cut(s)	100, 873, 2211, 2536, 2565
Eco147I	AGGCCT	1 cut(s)	542
Eco24I	GRGCYC	2 cut(s)	1194, 2948
Eco47I	GGWCC	5 cut(s)	136, 355, 870, 2051, 2978
Eco47III	AGCGCT	1 cut(s)	311
Eco57I	CTGAAG	4 cut(s)	1170, 2536, 2720, 2852
Eco88I	CYCGRG	2 cut(s)	367, 1729
EcoO109I	RGGNCCY	1 cut(s)	1190
EcoRI	GAATTC	6 cut(s)	57, 380, 479, 1521, 1969, 2662
EcoRII	CCWGG	8 cut(s)	16, 210, 537, 600, 762, 908, 2601, 2846
EcoT14I	CCWWGG	5 cut(s)	100, 873, 2211, 2536, 2565
EcoT22I	ATGCAT	1 cut(s)	408
EcoT38I	GRGCYC	2 cut(s)	1194, 2948
ErhI	CCWWGG	5 cut(s)	100, 873, 2211, 2536, 2565
FalI	AAGNNNNNCTT	4 cut(s)	1168, 1200, 1625, 1657
FaqI	GGGAC	2 cut(s)	122, 2306
FauNDI	CATATG	1 cut(s)	1981
FbaI	TGATCA	2 cut(s)	178, 442
FblI	GTMKAC	3 cut(s)	1408, 1773, 1799
Fnu4HI	GCNGC	6 cut(s)	417, 822, 825, 1149, 1265, 3070
FokI	GGATG	9 cut(s)	174, 194, 516, 779, 965, 1509, 1520, 2432, 2657
FriOI	GRGCYC	2 cut(s)	1194, 2948
Fsp4HI	GCNGC	6 cut(s)	417, 822, 825, 1149, 1265, 3070
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	6 cut(s)	417, 822, 825, 1149, 1265, 3070
GsuI	CTGGAG	1 cut(s)	656
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	6 cut(s)	542, 1027, 1192, 1993, 2154, 2601
HapII	CCGG	2 cut(s)	114, 1990
HgaI	GACGC	1 cut(s)	2576
HhaI	GCGC	1 cut(s)	312
Hin1I	GRCGYC	2 cut(s)	156, 2587
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HincII	GTYRAC	4 cut(s)	374, 433, 946, 1800
HindII	GTYRAC	4 cut(s)	374, 433, 946, 1800
HindIII	AAGCTT	2 cut(s)	1882, 2837
HpaII	CCGG	2 cut(s)	114, 1990
HphI	GGTGA	2 cut(s)	1052, 2607
Hpy99I	CGWCG	4 cut(s)	155, 158, 161, 2592
HpyAV	CCTTC	5 cut(s)	729, 993, 1170, 1733, 2933
HpyCH4III	ACNGT	7 cut(s)	175, 1404, 1516, 1690, 2041, 2416, 2500
HpyCH4IV	ACGT	8 cut(s)	126, 156, 288, 958, 1119, 1269, 2047, 2228
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 539, 1007, 1742, 2836
HpySE526I	ACGT	8 cut(s)	126, 156, 288, 958, 1119, 1269, 2047, 2228
Hsp92I	GRCGYC	2 cut(s)	156, 2587
HspAI	GCGC	1 cut(s)	310
Ksp22I	TGATCA	2 cut(s)	178, 442
LmnI	GCTCC	6 cut(s)	200, 554, 1957, 2125, 2740, 3049
Lsp1109I	GCAGC	5 cut(s)	428, 808, 811, 1135, 1276
LweI	GCATC	8 cut(s)	322, 469, 988, 1204, 1231, 1370, 1445, 2427
MabI	ACCWGGT	1 cut(s)	908
MaeII	ACGT	8 cut(s)	126, 156, 288, 958, 1119, 1269, 2047, 2228
MaeIII	GTNAC	8 cut(s)	349, 487, 1040, 1246, 1444, 1578, 2191, 2394
MfeI	CAATTG	1 cut(s)	1224
MflI	RGATCY	2 cut(s)	1373, 2405
MhlI	GDGCHC	3 cut(s)	559, 1194, 2948
MlsI	TGGCCA	2 cut(s)	1027, 2601
MluNI	TGGCCA	2 cut(s)	1027, 2601
MmeI	TCCRAC	7 cut(s)	34, 139, 216, 222, 544, 1679, 2770
Mox20I	TGGCCA	2 cut(s)	1027, 2601
Mph1103I	ATGCAT	1 cut(s)	408
MroXI	GAANNNNTTC	3 cut(s)	1899, 2840, 3059
MscI	TGGCCA	2 cut(s)	1027, 2601
MslI	CAYNNNNRTG	5 cut(s)	401, 1239, 2210, 3081, 3084
Msp20I	TGGCCA	2 cut(s)	1027, 2601
MspA1I	CMGCKG	1 cut(s)	1957
MspCI	CTTAAG	1 cut(s)	1615
MspI	CCGG	2 cut(s)	114, 1990
MspR9I	CCNGG	8 cut(s)	18, 212, 539, 602, 764, 910, 2603, 2848
MunI	CAATTG	1 cut(s)	1224
Mva1269I	GAATGC	1 cut(s)	2522
MvaI	CCWGG	8 cut(s)	18, 212, 539, 602, 764, 910, 2603, 2848
MvnI	CGCG	1 cut(s)	2274
MwoI	GCNNNNNNNGC	5 cut(s)	260, 539, 1007, 1742, 2836
NcoI	CCATGG	2 cut(s)	873, 2211
NdeI	CATATG	1 cut(s)	1981
NheI	GCTAGC	1 cut(s)	1751
NlaIV	GGNNCC	7 cut(s)	138, 196, 914, 1192, 1735, 1953, 2407
NmeAIII	GCCGAG	1 cut(s)	2506
NmuCI	GTSAC	6 cut(s)	349, 487, 1040, 1246, 1578, 2394
NruI	TCGCGA	1 cut(s)	2274
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	3 cut(s)	400, 2132, 2356
PagI	TCATGA	3 cut(s)	1237, 1552, 3082
PaqCI	CACCTGC	1 cut(s)	1736
PceI	AGGCCT	1 cut(s)	542
PctI	GAATGC	1 cut(s)	2522
PdmI	GAANNNNTTC	3 cut(s)	1899, 2840, 3059
PflFI	GACNNNGTC	3 cut(s)	155, 359, 1514
PflMI	CCANNNNNTGG	2 cut(s)	500, 1706
PfoI	TCCNGGA	1 cut(s)	762
PkrI	GCNGC	6 cut(s)	418, 823, 826, 1150, 1266, 3071
Ppu21I	YACGTR	1 cut(s)	2048
PshAI	GACNNNNGTC	1 cut(s)	630
PshBI	ATTAAT	3 cut(s)	1068, 2082, 2337
PsiI	TTATAA	2 cut(s)	1923, 2729
Psp1406I	AACGTT	1 cut(s)	2228
Psp6I	CCWGG	8 cut(s)	16, 210, 537, 600, 762, 908, 2601, 2846
PspGI	CCWGG	8 cut(s)	16, 210, 537, 600, 762, 908, 2601, 2846
PspN4I	GGNNCC	7 cut(s)	138, 196, 914, 1192, 1735, 1953, 2407
PspOMI	GGGCCC	1 cut(s)	1190
PspPI	GGNCC	8 cut(s)	136, 355, 870, 1190, 1191, 2051, 2153, 2978
PstI	CTGCAG	1 cut(s)	829
PsuI	RGATCY	2 cut(s)	1373, 2405
PsyI	GACNNNGTC	3 cut(s)	155, 359, 1514
RruI	TCGCGA	1 cut(s)	2274
RsaI	GTAC	6 cut(s)	974, 1183, 1255, 1484, 1698, 2070
RsaNI	GTAC	6 cut(s)	973, 1182, 1254, 1483, 1697, 2069
RseI	CAYNNNNRTG	5 cut(s)	401, 1239, 2210, 3081, 3084
SalI	GTCGAC	1 cut(s)	1798
SatI	GCNGC	6 cut(s)	417, 822, 825, 1149, 1265, 3070
Sau96I	GGNCC	8 cut(s)	136, 355, 870, 1190, 1191, 2051, 2153, 2978
ScaI	AGTACT	1 cut(s)	1183
ScrFI	CCNGG	8 cut(s)	18, 212, 539, 602, 764, 910, 2603, 2848
SduI	GDGCHC	3 cut(s)	559, 1194, 2948
SexAI	ACCWGGT	1 cut(s)	908
SfaNI	GCATC	8 cut(s)	322, 469, 988, 1204, 1231, 1370, 1445, 2427
SfcI	CTRYAG	2 cut(s)	825, 2278
SinI	GGWCC	5 cut(s)	136, 355, 870, 2051, 2978
SmiMI	CAYNNNNRTG	5 cut(s)	401, 1239, 2210, 3081, 3084
SmlI	CTYRAG	2 cut(s)	1615, 2467
SmoI	CTYRAG	2 cut(s)	1615, 2467
SpeI	ACTAGT	2 cut(s)	1324, 2998
SseBI	AGGCCT	1 cut(s)	542
SsiI	CCGC	4 cut(s)	1955, 3028, 3067, 3070
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	8 cut(s)	16, 210, 537, 600, 762, 908, 2601, 2846
StyI	CCWWGG	5 cut(s)	100, 873, 2211, 2536, 2565
TaaI	ACNGT	7 cut(s)	175, 1404, 1516, 1690, 2041, 2416, 2500
TaiI	ACGT	8 cut(s)	129, 159, 291, 961, 1122, 1272, 2050, 2231
TaqI	TCGA	6 cut(s)	483, 570, 589, 850, 1575, 1799
TaqII	GACCGA	2 cut(s)	40, 2382
TatI	WGTACW	4 cut(s)	972, 1181, 1482, 2068
TauI	GCSGC	1 cut(s)	3072
TscAI	CASTG	5 cut(s)	1255, 1409, 2212, 2242, 2421
TseFI	GTSAC	6 cut(s)	349, 487, 1040, 1246, 1578, 2394
TseI	GCWGC	5 cut(s)	416, 821, 824, 1148, 1264
Tsp45I	GTSAC	6 cut(s)	349, 487, 1040, 1246, 1578, 2394
TspGWI	ACGGA	6 cut(s)	368, 491, 905, 1214, 1684, 2972
TspRI	CASTG	5 cut(s)	1255, 1409, 2212, 2242, 2421
Tth111I	GACNNNGTC	3 cut(s)	155, 359, 1514
Van91I	CCANNNNNTGG	2 cut(s)	500, 1706
Vha464I	CTTAAG	1 cut(s)	1615
VpaK11BI	GGWCC	5 cut(s)	136, 355, 870, 2051, 2978
VspI	ATTAAT	3 cut(s)	1068, 2082, 2337
XbaI	TCTAGA	1 cut(s)	1594
XceI	RCATGY	3 cut(s)	400, 2132, 2356
XcmI	CCANNNNNNNNNTGG	2 cut(s)	501, 2315
XmaJI	CCTAGG	1 cut(s)	2536
XmiI	GTMKAC	3 cut(s)	1408, 1773, 1799
XmnI	GAANNNNTTC	3 cut(s)	1899, 2840, 3059
ZraI	GACGTC	1 cut(s)	157
ZrmI	AGTACT	1 cut(s)	1183
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.