Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001301

Physical Location & Seq

Genomic Coordinates Forward (+)

8160827 .. 8167680

Gene Structure 6854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16859

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2787 bp

ATGGCGGTTGAAGCTTGTTGCTTACGGCTTCTCGTGGTACTAATTGTGTTTCTAAATGTAGAATCCAAGTTCATGGCCTACAATACAACGTCGCAGATTGTCCCCGGAAAGCTTAACGTTCATTTAGTTCCTCACACCCATGACGATGTCGGATGGCGGAAAACCGTTGACCAGTACTACACCGGTGCCAATAATTCTCTCCTGGACGCTCCCGCTTGTGTTCGAAACGTGTTGGATTCTTTAGTTCCCGCATTGTTGGCCGATAAGAACCGCAAGTTCATATATGCTGAGCAGAAATGGGGGATGTGCATGCAAGATGAGGCTGCTACGCATTACATTGATATGATTGATCAGACGACTCTAGGGCATCGATTTATTAAGCAAGAGTTCAATGTGACTCCAAGAGTTGGCTGGCAAATCGATTCGTTTGGACATTCTTCTGTGCAGGCTTACCTTTTGGCGGCTGAGGTTGGCTTTGATTCCCTATTTTTTGGACGAATCGACTACCAAGATATAGCTACGAGGAAAAATGAGAAAAGCCTTGAGGTTGTGTGGCGGGGTTCTAAGAGTCTCGGTTCATCTGCACAGATTTTTGCTGGTGCATTCCCTACGCTATATGTTCCTCCTTCTCATAATTTCTACTTTGACACTGATGACGTCCCCCCTCTTGTACAAGATAATATGAATCTTGGTGACTACAATGTGGCAGATCGCATTAATGATTTTGTATCTGAAGCAATATCACAAGCAAACATTACTCGTACAAATCATATCATGTGGACCATGGGAAAGGATTTCGCGTATCAATATGCTAATTCATGGTTCAGTCAGATGGACAAATTCATTCATCATGTGAATCAAGATGGGCGTGTCAATGCCCTATACTCAACCCCATCAATATACACCGATGCCAAACATGCAACAAATGAGTCCTGGCCAATCAAGAGTGATGACTTCTTTCCATATGCTAGTGAAGTGAATGCATACTGGACTGGATATTTTACAAGCAGGCCAGCCCTCAAACGTTATGTTAGAATGATGAGTAGCTACTATTTGGCAGCAAGGCAATTGGAATTTTTTACGGGAATAAGTAAATCAGGGCCTAACACAGATTCTCTGGCTGATGCTTTAGCGATTGCTCAACATCATGATGCAGTTAGTGGCACATCTAGGCAGCACGTAGCTGATGATTATACAAAACGACTTTCAATAGGTTACAAGGAGGCTGAGAAGGTTGTTGCAGAATCACTTTCTTGCTTGATAAGTTCAAGATTAAGCACTGGTTGCAAGAGTTGTCCACTTCTGAATATTAGCTATTGCCCCCCGTCAGAAGTTGATCTTTCAAAGGGAAAACACCTGGTTATTGTTGTCTATAACCCTCTGGGATGGAAAAGAGAGGATGTGATAAAGATTCCTGTTGTCAGTGAAAAAGTCACTGTAAAGGACTCCACCGGAAAGGAAATTGAATCACAGATTCTACCGCTGCTTAATGCATCTGTCAGCATAAGAAATGACCATGTTAAGGCATATTTGGGTATAGCACCGAGTGTGACCACAAGTTATTGGCTTGCATTTTCAGCAACTGTACCACCTCTTGGTTTTAGCACTTACATGGTCTCAAGTGCTGCCACACAGACAGGCCACCTTAAAATTGCAGCTACTACTTCAGAGAGACATACAGTGTACAAGACAGAAACAAGTCAAAATGAAACAATAAAAGTTGGGCCTGGAAACTTGAAACTCATTTATTCTGGAAACGATGGAAAACTGATTCAGTACACAAACAGCAGAAGCTCGGTCAAAGAGTCGGTAACACAATCATTTAGCTACTACCCTGGAGATGATGGAAGTGTGGTGGATTACGGTGAGGATGGAAATCCTCATTTTCAGGCCTCAGGAGCATATGTCTTCCGTCCTAATGGTACATATCCCATTAAATCCGAAGGGCAGGTCACTAGAGTGTACAGGGAAAAAGAGCATGCTGAGATTGAATTTACTATAGGGCCTATACCAGTTGATGATAGAATAGGCAAAGAGATTGTAACTAAGATTACAACCAGCATGAGAACCAACAAACAATTCTACACAGATTCTAACGGGCGCGATTTTATTCAAAGAATTCGAGACTACAGAAAAGACTGGGACCTGGAAGTAAACCAACCTGTCGCAGGAAACTATTATCCGCTGTCAGTATTAGTGGATAGATCTGTAGGGGGATCCAGCATTGTGGACGGGCAATTGGAACTGATGCTTCATAGGTTTATTCTAATTACAGGAAAGTACCACCTGAGAATTGATCCTTTAGGAGAGGGTGCTAAGTGGCGTCGATCATTTGGTCAGGAGATATATTCTCCACTTCTATTAGCCTTCACAGAACAAAATGGAGATGACTGGACAAACTCTCATGTCACAACCTTTTCGGGAATGGATCCTTCCTACACTTTACCTGATAATGTTGCAATTATAACTCTCCAGGAGCTGGAAGATGGGAAAGTTCTCTTTCGCCTGGCGCATTTATACGAGATTGGAGAGGACAAGCATCTTTCAGTTATGGCAAGTGTGGAACTGAAAAAGGTGTTTGCAAACAAGAAGATAAAGCATATAACAGAAATGAGCTTATCTGCTAACCAAGAAAGAAGGGAAATGGAAAGGAAGAGACTGGTTTGGAATGTGCAAGGCTCTTCTGAGGAAGGACCGAAAGGCTTGAGGGGAGGACCTGTTGATCCAACAAAGCTAGTGGTGAATCTTGCTCCAATGGAAATTCGAACATTTACCATCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

928

Amino Acids

104.22

Weight (kDa)

6.25

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	39 - 98	2.9e-10	Glycosyl hydrolases family 38 N-terminal domain
Glyco_hydro_38N	PF01074	101 - 323	2.4e-46	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	328 - 420	2.1e-22	Alpha mannosidase middle domain
Laman-like_dom	PF21260	516 - 539	5.9e-09	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	650 - 755	1.2e-19	Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2	PF17677	818 - 924	2.4e-07	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13980 AT5G13980 AT5G13980
fragaria_vesca	FvH4_5g09420 FvH4_5g09421 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272
malus_domestica	MD06G1131600.v1.1 MD09G1002900.v1.1 MD17G1007000.v1.1
prunus_persica	Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.5G142600_v2.0.a1 Prupe.5G142600_v2.0.a1
pyrus_communis	pycom06g12300 pycom06g12310 pycom111g00240 pycom17g00260
rosa_chinensis	RchiOBHm_Chr2g0176471 RchiOBHm_Chr2g0176481 RchiOBHm_Chr7g0188771 RchiOBHm_Chr7g0188781
rosa_laevigata	RLG00000004661 RLG00000004662 RLG00000022416
rosa_multiflora	Rmu_sc0000303.1_g000057 Rmu_sc0003642.1_g000008 Rmu_sc0011904.1_g000012
rosa_roxburghii	Rroxscaffold_2G00076370 Rroxscaffold_3G00266040 Rroxscaffold_3G00266050
rosa_rugosa	Rorug02G0595000 Rorug06G0493700
rosa_samantha	Rh2AG673300 Rh2BG684600 Rh2CG647400 Rh2DG698200 Rh7AG098300 Rh7AG098400 Rh7BG099900 Rh7BG100200 Rh7CG101600 Rh7CG101700 Rh7DG100100 Rh7DG100200
rosa_wichuraiana	Rw0G010390 Rw2G055220 Rw7G008480 Rw7G008490

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2465
AatII	GACGTC	1 cut(s)	660
Acc36I	ACCTGC	1 cut(s)	1939
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	3 cut(s)	407, 1595, 2479
AccII	CGCG	2 cut(s)	800, 2103
AciI	CCGC	9 cut(s)	5, 157, 213, 249, 271, 461, 556, 1481, 2183
AclI	AACGTT	2 cut(s)	117, 1024
AclWI	GGATC	6 cut(s)	2211, 2224, 2291, 2423, 2436, 2717
AcoI	YGGCCR	2 cut(s)	258, 935
AcsI	RAATTY	5 cut(s)	839, 1073, 1991, 2118, 2760
AcuI	CTGAAG	2 cut(s)	753, 1650
AcyI	GRCGYC	2 cut(s)	657, 2323
AdeI	CACNNNGTG	1 cut(s)	1547
AfiI	CCNNNNNNNGG	6 cut(s)	407, 460, 1522, 1595, 2168, 2479
AflIII	ACRYGT	1 cut(s)	228
AgeI	ACCGGT	1 cut(s)	182
AgsI	TTSAA	9 cut(s)	11, 391, 1209, 1269, 1344, 1466, 1738, 1991, 2114
AjnI	CCWGG	8 cut(s)	201, 932, 1356, 1726, 1834, 2145, 2472, 2505
AjuI	GAANNNNNNNTTGG	2 cut(s)	2063, 2095
AleI	CACNNNNGTG	1 cut(s)	1958
Alw26I	GTCTC	5 cut(s)	575, 1621, 1666, 2118, 2650
AlwI	GGATC	6 cut(s)	2211, 2224, 2291, 2423, 2436, 2717
AlwNI	CAGNNNCTG	2 cut(s)	1583, 2479
AoxI	GGCC	9 cut(s)	75, 258, 935, 1010, 1100, 1639, 1724, 1890, 2003
ApeKI	GCWGC	6 cut(s)	323, 1058, 1174, 1483, 1625, 1655
ApoI	RAATTY	5 cut(s)	839, 1073, 1991, 2118, 2760
ArsI	GACNNNNNNTTYG	2 cut(s)	1935, 1967
AseI	ATTAAT	1 cut(s)	717
AsiGI	ACCGGT	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	2103, 2512
AspS9I	GGNCC	7 cut(s)	780, 1100, 1724, 2003, 2143, 2693, 2714
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	704, 1877, 2752
AsuII	TTCGAA	2 cut(s)	223, 2764
AvaII	GGWCC	4 cut(s)	780, 2143, 2693, 2714
AxyI	CCTNAGG	1 cut(s)	1894
BalI	TGGCCA	1 cut(s)	937
BamHI	GGATCC	2 cut(s)	2216, 2428
BanI	GGYRCC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	1900
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	6 cut(s)	310, 1070, 1186, 1470, 1612, 1667
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	8 cut(s)	203, 934, 1358, 1728, 1836, 2147, 2474, 2507
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	5 cut(s)	575, 1621, 1666, 2118, 2650
BfaI	CTAG	6 cut(s)	362, 969, 1170, 1956, 2735, 2785
BfmI	CTRYAG	3 cut(s)	1998, 2128, 2208
BfuAI	ACCTGC	1 cut(s)	1939
BglII	AGATCT	1 cut(s)	2204
BisI	GCNGC	7 cut(s)	324, 462, 1059, 1175, 1484, 1626, 1656
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	7 cut(s)	325, 463, 1060, 1176, 1485, 1627, 1657
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	9 cut(s)	105, 203, 934, 1358, 1728, 1836, 2147, 2474, 2507
Bme18I	GGWCC	4 cut(s)	780, 2143, 2693, 2714
BmgT120I	GGNCC	7 cut(s)	780, 1100, 1724, 2003, 2143, 2693, 2714
BmiI	GGNNCC	4 cut(s)	187, 2144, 2218, 2430
BmrFI	CCNGG	9 cut(s)	105, 203, 934, 1358, 1728, 1836, 2147, 2474, 2507
BmrI	ACTGGG	1 cut(s)	2149
BmsI	GCATC	7 cut(s)	376, 898, 1114, 1141, 1502, 2238, 2548
BmuI	ACTGGG	1 cut(s)	2149
BpiI	GAAGAC	1 cut(s)	1900
BpmI	CTGGAG	2 cut(s)	1857, 2456
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	288
Bpu14I	TTCGAA	2 cut(s)	223, 2764
BpuEI	CTTGAG	3 cut(s)	563, 1603, 2725
BpuMI	CCSGG	1 cut(s)	105
Bsa29I	ATCGAT	2 cut(s)	370, 420
BsaAI	YACGTR	1 cut(s)	1180
BsaBI	GATNNNNATC	1 cut(s)	1875
BsaHI	GRCGYC	2 cut(s)	657, 2323
BsaI	GGTCTC	1 cut(s)	1621
BsaJI	CCNNGG	3 cut(s)	103, 783, 1834
BsaWI	WCCGGW	2 cut(s)	182, 1451
BsaXI	ACNNNNNCTCC	4 cut(s)	1890, 1920, 2703, 2733
Bsc4I	CCNNNNNNNGG	6 cut(s)	407, 460, 1522, 1595, 2168, 2479
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	8 cut(s)	172, 992, 997, 1285, 2012, 2144, 2396, 2664
Bse21I	CCTNAGG	1 cut(s)	1894
Bse8I	GATNNNNATC	1 cut(s)	1875
BseBI	CCWGG	8 cut(s)	203, 934, 1358, 1728, 1836, 2147, 2474, 2507
BseCI	ATCGAT	2 cut(s)	370, 420
BseDI	CCNNGG	3 cut(s)	103, 783, 1834
BseGI	GGATG	5 cut(s)	158, 309, 1391, 1405, 1876
BseJI	GATNNNNATC	1 cut(s)	1875
BseLI	CCNNNNNNNGG	6 cut(s)	407, 460, 1522, 1595, 2168, 2479
BseMII	CTCAG	7 cut(s)	279, 456, 1218, 1908, 1974, 2279, 2676
BseNI	ACTGG	8 cut(s)	172, 992, 997, 1285, 2012, 2144, 2396, 2664
BseXI	GCAGC	6 cut(s)	310, 1070, 1186, 1470, 1612, 1667
BsgI	GTGCAG	2 cut(s)	464, 567
Bsh1236I	CGCG	2 cut(s)	800, 2103
BshFI	GGCC	9 cut(s)	77, 260, 937, 1012, 1102, 1641, 1726, 1892, 2005
BshNI	GGYRCC	1 cut(s)	185
BshTI	ACCGGT	1 cut(s)	182
BshVI	ATCGAT	2 cut(s)	370, 420
BsiSI	CCGG	3 cut(s)	105, 183, 1452
BslFI	GGGAC	3 cut(s)	86, 644, 2156
BslI	CCNNNNNNNGG	6 cut(s)	407, 460, 1522, 1595, 2168, 2479
BsmAI	GTCTC	5 cut(s)	575, 1621, 1666, 2118, 2650
BsmFI	GGGAC	3 cut(s)	86, 644, 2156
BsmI	GAATGC	2 cut(s)	602, 985
BsnI	GGCC	9 cut(s)	77, 260, 937, 1012, 1102, 1641, 1726, 1892, 2005
Bso31I	GGTCTC	1 cut(s)	1621
Bsp119I	TTCGAA	2 cut(s)	223, 2764
Bsp1407I	TGTACA	3 cut(s)	670, 1683, 1962
Bsp143I	GATC	9 cut(s)	349, 709, 1336, 2204, 2216, 2296, 2327, 2428, 2722
Bsp1720I	GCTNAGC	1 cut(s)	288
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	9 cut(s)	5, 157, 213, 249, 271, 461, 556, 1481, 2183
BspANI	GGCC	9 cut(s)	77, 260, 937, 1012, 1102, 1641, 1726, 1892, 2005
BspCNI	CTCAG	7 cut(s)	280, 457, 1219, 1907, 1975, 2280, 2677
BspDI	ATCGAT	2 cut(s)	370, 420
BspFNI	CGCG	2 cut(s)	800, 2103
BspHI	TCATGA	1 cut(s)	1147
BspLI	GGNNCC	4 cut(s)	187, 2144, 2218, 2430
BspMI	ACCTGC	1 cut(s)	1939
BspPI	GGATC	6 cut(s)	2211, 2224, 2291, 2423, 2436, 2717
BspQI	GCTCTTC	1 cut(s)	2686
BspT104I	TTCGAA	2 cut(s)	223, 2764
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	1621
BsrFI	RCCGGY	1 cut(s)	182
BsrGI	TGTACA	3 cut(s)	670, 1683, 1962
BsrI	ACTGG	8 cut(s)	172, 992, 997, 1285, 2012, 2144, 2396, 2664
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	103, 783, 1834
BssMI	GATC	9 cut(s)	349, 709, 1336, 2204, 2216, 2296, 2327, 2428, 2722
BssNI	GRCGYC	2 cut(s)	657, 2323
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	783
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	8 cut(s)	203, 934, 1358, 1728, 1836, 2147, 2474, 2507
Bst4CI	ACNGT	5 cut(s)	166, 1438, 1585, 1681, 1865
Bst6I	CTCTTC	2 cut(s)	2648, 2686
BstACI	GRCGYC	2 cut(s)	657, 2323
BstAPI	GCANNNNNTGC	1 cut(s)	1284
BstAUI	TGTACA	3 cut(s)	670, 1683, 1962
BstBAI	YACGTR	1 cut(s)	1180
BstBI	TTCGAA	2 cut(s)	223, 2764
BstC8I	GCNNGC	7 cut(s)	311, 413, 447, 1010, 1014, 1569, 1980
BstDSI	CCRYGG	1 cut(s)	783
BstENI	CCTNNNNNAGG	1 cut(s)	2166
BstF5I	GGATG	5 cut(s)	158, 309, 1391, 1405, 1876
BstFNI	CGCG	2 cut(s)	800, 2103
BstHHI	GCGC	2 cut(s)	2103, 2512
BstKTI	GATC	9 cut(s)	352, 712, 1339, 2207, 2219, 2299, 2330, 2431, 2725
BstMAI	GTCTC	5 cut(s)	575, 1621, 1666, 2118, 2650
BstMBI	GATC	9 cut(s)	349, 709, 1336, 2204, 2216, 2296, 2327, 2428, 2722
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 257, 917, 1284, 1577, 1898
BstNI	CCWGG	8 cut(s)	203, 934, 1358, 1728, 1836, 2147, 2474, 2507
BstNSI	RCATGY	3 cut(s)	313, 920, 1982
BstSCI	CCNGG	9 cut(s)	103, 201, 932, 1356, 1726, 1834, 2145, 2472, 2505
BstSFI	CTRYAG	3 cut(s)	1998, 2128, 2208
BstUI	CGCG	2 cut(s)	800, 2103
BstV1I	GCAGC	6 cut(s)	310, 1070, 1186, 1470, 1612, 1667
BstV2I	GAAGAC	1 cut(s)	1900
BstX2I	RGATCY	3 cut(s)	2204, 2216, 2428
BstXI	CCANNNNNNTGG	2 cut(s)	73, 2227
BstYI	RGATCY	3 cut(s)	2204, 2216, 2428
Bsu15I	ATCGAT	2 cut(s)	370, 420
Bsu36I	CCTNAGG	1 cut(s)	1894
BsuRI	GGCC	9 cut(s)	77, 260, 937, 1012, 1102, 1641, 1726, 1892, 2005
BsuTUI	ATCGAT	2 cut(s)	370, 420
BtgI	CCRYGG	1 cut(s)	783
BtsCI	GGATG	5 cut(s)	158, 309, 1391, 1405, 1876
BtsIMutI	CAGTG	5 cut(s)	648, 1278, 1429, 1434, 1686
BveI	ACCTGC	1 cut(s)	1939
Cac8I	GCNNGC	7 cut(s)	311, 413, 447, 1010, 1014, 1569, 1980
CaiI	CAGNNNCTG	2 cut(s)	1583, 2479
CciI	TCATGA	1 cut(s)	1147
CfoI	GCGC	2 cut(s)	2103, 2512
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	7 cut(s)	780, 1100, 1724, 2003, 2143, 2693, 2714
ClaI	ATCGAT	2 cut(s)	370, 420
CseI	GACGC	2 cut(s)	215, 2312
CsiI	ACCWGGT	1 cut(s)	1356
CspAI	ACCGGT	1 cut(s)	182
CspCI	CAANNNNNGTGG	2 cut(s)	2718, 2753
DpnI	GATC	9 cut(s)	351, 711, 1338, 2206, 2218, 2298, 2329, 2430, 2724
DpnII	GATC	9 cut(s)	349, 709, 1336, 2204, 2216, 2296, 2327, 2428, 2722
DraIII	CACNNNGTG	1 cut(s)	1547
EaeI	YGGCCR	2 cut(s)	258, 935
Eam1104I	CTCTTC	2 cut(s)	2648, 2686
EarI	CTCTTC	2 cut(s)	2648, 2686
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	783
Eco147I	AGGCCT	1 cut(s)	1892
Eco31I	GGTCTC	1 cut(s)	1621
Eco47I	GGWCC	4 cut(s)	780, 2143, 2693, 2714
Eco57I	CTGAAG	2 cut(s)	753, 1650
Eco81I	CCTNAGG	1 cut(s)	1894
EcoNI	CCTNNNNNAGG	1 cut(s)	2166
EcoO109I	RGGNCCY	4 cut(s)	1100, 2003, 2143, 2714
EcoRI	GAATTC	1 cut(s)	2118
EcoRII	CCWGG	8 cut(s)	201, 932, 1356, 1726, 1834, 2145, 2472, 2505
EcoT14I	CCWWGG	1 cut(s)	783
EcoT22I	ATGCAT	2 cut(s)	985, 1495
ErhI	CCWWGG	1 cut(s)	783
FalI	AAGNNNNNCTT	2 cut(s)	1323, 1355
FaqI	GGGAC	3 cut(s)	86, 644, 2156
FauI	CCCGC	3 cut(s)	220, 256, 549
FauNDI	CATATG	2 cut(s)	964, 1903
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	7 cut(s)	324, 462, 1059, 1175, 1484, 1626, 1656
FokI	GGATG	5 cut(s)	165, 316, 1398, 1412, 1883
Fsp4HI	GCNGC	7 cut(s)	324, 462, 1059, 1175, 1484, 1626, 1656
FspBI	CTAG	6 cut(s)	362, 969, 1170, 1956, 2735, 2785
GlaI	GCGC	2 cut(s)	2102, 2511
GluI	GCNGC	7 cut(s)	324, 462, 1059, 1175, 1484, 1626, 1656
GsuI	CTGGAG	2 cut(s)	1857, 2456
HaeIII	GGCC	9 cut(s)	77, 260, 937, 1012, 1102, 1641, 1726, 1892, 2005
HapII	CCGG	3 cut(s)	105, 183, 1452
HgaI	GACGC	2 cut(s)	215, 2312
HhaI	GCGC	2 cut(s)	2103, 2512
Hin1I	GRCGYC	2 cut(s)	657, 2323
Hin6I	GCGC	2 cut(s)	2101, 2510
HinP1I	GCGC	2 cut(s)	2101, 2510
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	2 cut(s)	12, 110
HpaII	CCGG	3 cut(s)	105, 183, 1452
HphI	GGTGA	3 cut(s)	704, 1877, 2752
Hpy166II	GTNNAC	8 cut(s)	169, 780, 1298, 1684, 1779, 1963, 2155, 2230
Hpy188I	TCNGA	9 cut(s)	152, 354, 733, 831, 1305, 1330, 1669, 1942, 2686
Hpy188III	TCNNGA	9 cut(s)	860, 943, 1148, 1269, 1752, 1896, 2123, 2339, 2421
Hpy8I	GTNNAC	8 cut(s)	169, 780, 1298, 1684, 1779, 1963, 2155, 2230
Hpy99I	CGWCG	2 cut(s)	94, 2328
HpyAV	CCTTC	7 cut(s)	636, 1225, 1937, 2377, 2442, 2631, 2684
HpyCH4III	ACNGT	5 cut(s)	166, 1438, 1585, 1681, 1865
HpyCH4IV	ACGT	6 cut(s)	89, 117, 228, 657, 1024, 1179
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 257, 917, 1284, 1577, 1898
HpySE526I	ACGT	6 cut(s)	89, 117, 228, 657, 1024, 1179
Hsp92I	GRCGYC	2 cut(s)	657, 2323
HspAI	GCGC	2 cut(s)	2101, 2510
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	9 cut(s)	349, 709, 1336, 2204, 2216, 2296, 2327, 2428, 2722
LguI	GCTCTTC	1 cut(s)	2686
LmnI	GCTCC	4 cut(s)	214, 1898, 2476, 2755
Lsp1109I	GCAGC	6 cut(s)	310, 1070, 1186, 1470, 1612, 1667
LweI	GCATC	7 cut(s)	376, 898, 1114, 1141, 1502, 2238, 2548
MabI	ACCWGGT	1 cut(s)	1356
MaeI	CTAG	6 cut(s)	362, 969, 1170, 1956, 2735, 2785
MaeII	ACGT	6 cut(s)	89, 117, 228, 657, 1024, 1179
MaeIII	GTNAC	9 cut(s)	394, 692, 1214, 1432, 1549, 1810, 1951, 2041, 2407
MalI	GATC	9 cut(s)	351, 711, 1338, 2206, 2218, 2298, 2329, 2430, 2724
MboI	GATC	9 cut(s)	349, 709, 1336, 2204, 2216, 2296, 2327, 2428, 2722
MboII	GAAGA	6 cut(s)	429, 1900, 2495, 2602, 2665, 2673
MfeI	CAATTG	2 cut(s)	1067, 2237
MflI	RGATCY	3 cut(s)	2204, 2216, 2428
MlsI	TGGCCA	1 cut(s)	937
MluNI	TGGCCA	1 cut(s)	937
MlyI	GAGTC	6 cut(s)	352, 391, 577, 938, 1439, 1814
MmeI	TCCRAC	3 cut(s)	130, 213, 2750
Mox20I	TGGCCA	1 cut(s)	937
Mph1103I	ATGCAT	2 cut(s)	985, 1495
MscI	TGGCCA	1 cut(s)	937
MseI	TTAA	8 cut(s)	114, 378, 717, 1274, 1488, 1521, 1647, 1935
MslI	CAYNNNNRTG	6 cut(s)	138, 144, 341, 1149, 1610, 1958
Msp20I	TGGCCA	1 cut(s)	937
MspA1I	CMGCKG	2 cut(s)	1483, 2185
MspI	CCGG	3 cut(s)	105, 183, 1452
MspR9I	CCNGG	9 cut(s)	105, 203, 934, 1358, 1728, 1836, 2147, 2474, 2507
MunI	CAATTG	2 cut(s)	1067, 2237
Mva1269I	GAATGC	2 cut(s)	602, 985
MvaI	CCWGG	8 cut(s)	203, 934, 1358, 1728, 1836, 2147, 2474, 2507
MvnI	CGCG	2 cut(s)	800, 2103
MwoI	GCNNNNNNNGC	6 cut(s)	11, 257, 917, 1284, 1577, 1898
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	783
NdeI	CATATG	2 cut(s)	964, 1903
NdeII	GATC	9 cut(s)	349, 709, 1336, 2204, 2216, 2296, 2327, 2428, 2722
NlaIV	GGNNCC	4 cut(s)	187, 2144, 2218, 2430
NmuCI	GTSAC	6 cut(s)	394, 692, 1432, 1549, 1951, 2407
NsiI	ATGCAT	2 cut(s)	985, 1495
NspI	RCATGY	3 cut(s)	313, 920, 1982
NspV	TTCGAA	2 cut(s)	223, 2764
OliI	CACNNNNGTG	1 cut(s)	1958
PaeI	GCATGC	2 cut(s)	313, 1982
PagI	TCATGA	1 cut(s)	1147
PceI	AGGCCT	1 cut(s)	1892
PciSI	GCTCTTC	1 cut(s)	2686
PctI	GAATGC	2 cut(s)	602, 985
PflFI	GACNNNGTC	1 cut(s)	146
PflMI	CCANNNNNTGG	3 cut(s)	407, 1595, 2479
PfoI	TCCNGGA	2 cut(s)	201, 2472
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	7 cut(s)	325, 463, 1060, 1176, 1485, 1627, 1657
PleI	GAGTC	6 cut(s)	352, 391, 576, 937, 1439, 1813
PpsI	GAGTC	6 cut(s)	352, 391, 576, 937, 1439, 1813
Ppu21I	YACGTR	1 cut(s)	1180
PpuMI	RGGWCCY	2 cut(s)	2143, 2714
PshBI	ATTAAT	1 cut(s)	717
PsiI	TTATAA	1 cut(s)	2465
Psp1406I	AACGTT	2 cut(s)	117, 1024
Psp5II	RGGWCCY	2 cut(s)	2143, 2714
Psp6I	CCWGG	8 cut(s)	201, 932, 1356, 1726, 1834, 2145, 2472, 2505
PspGI	CCWGG	8 cut(s)	201, 932, 1356, 1726, 1834, 2145, 2472, 2505
PspN4I	GGNNCC	4 cut(s)	187, 2144, 2218, 2430
PspPI	GGNCC	7 cut(s)	780, 1100, 1724, 2003, 2143, 2693, 2714
PspPPI	RGGWCCY	2 cut(s)	2143, 2714
PstNI	CAGNNNCTG	2 cut(s)	1583, 2479
PsuI	RGATCY	3 cut(s)	2204, 2216, 2428
PsyI	GACNNNGTC	1 cut(s)	146
RseI	CAYNNNNRTG	6 cut(s)	138, 144, 341, 1149, 1610, 1958
SapI	GCTCTTC	1 cut(s)	2686
SaqAI	TTAA	8 cut(s)	114, 378, 717, 1274, 1488, 1521, 1647, 1935
SatI	GCNGC	7 cut(s)	324, 462, 1059, 1175, 1484, 1626, 1656
Sau3AI	GATC	9 cut(s)	349, 709, 1336, 2204, 2216, 2296, 2327, 2428, 2722
Sau96I	GGNCC	7 cut(s)	780, 1100, 1724, 2003, 2143, 2693, 2714
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	6 cut(s)	352, 391, 577, 938, 1439, 1814
ScrFI	CCNGG	9 cut(s)	105, 203, 934, 1358, 1728, 1836, 2147, 2474, 2507
SexAI	ACCWGGT	1 cut(s)	1356
SfaNI	GCATC	7 cut(s)	376, 898, 1114, 1141, 1502, 2238, 2548
SfcI	CTRYAG	3 cut(s)	1998, 2128, 2208
SfuI	TTCGAA	2 cut(s)	223, 2764
SgrAI	CRCCGGYG	1 cut(s)	182
SinI	GGWCC	4 cut(s)	780, 2143, 2693, 2714
SmiMI	CAYNNNNRTG	6 cut(s)	138, 144, 341, 1149, 1610, 1958
SmlI	CTYRAG	3 cut(s)	542, 1618, 2704
SmoI	CTYRAG	3 cut(s)	542, 1618, 2704
SphI	GCATGC	2 cut(s)	313, 1982
SseBI	AGGCCT	1 cut(s)	1892
SsiI	CCGC	9 cut(s)	5, 157, 213, 249, 271, 461, 556, 1481, 2183
SspI	AATATT	1 cut(s)	1309
SspMI	CTAG	6 cut(s)	362, 969, 1170, 1956, 2735, 2785
StuI	AGGCCT	1 cut(s)	1892
StyD4I	CCNGG	9 cut(s)	103, 201, 932, 1356, 1726, 1834, 2145, 2472, 2505
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	5 cut(s)	166, 1438, 1585, 1681, 1865
TaiI	ACGT	6 cut(s)	92, 120, 231, 660, 1027, 1182
TaqI	TCGA	8 cut(s)	223, 370, 420, 501, 2122, 2326, 2764, 2778
TaqII	GACCGA	2 cut(s)	1786, 2710
TatI	WGTACW	5 cut(s)	174, 670, 1683, 1776, 1962
TauI	GCSGC	1 cut(s)	464
Tru1I	TTAA	8 cut(s)	114, 378, 717, 1274, 1488, 1521, 1647, 1935
Tru9I	TTAA	8 cut(s)	114, 378, 717, 1274, 1488, 1521, 1647, 1935
TscAI	CASTG	5 cut(s)	655, 1285, 1429, 1441, 1686
TseFI	GTSAC	6 cut(s)	394, 692, 1432, 1549, 1951, 2407
TseI	GCWGC	6 cut(s)	323, 1058, 1174, 1483, 1625, 1655
Tsp45I	GTSAC	6 cut(s)	394, 692, 1432, 1549, 1951, 2407
TspGWI	ACGGA	1 cut(s)	1901
TspRI	CASTG	5 cut(s)	655, 1285, 1429, 1441, 1686
Tth111I	GACNNNGTC	1 cut(s)	146
Van91I	CCANNNNNTGG	3 cut(s)	407, 1595, 2479
VpaK11BI	GGWCC	4 cut(s)	780, 2143, 2693, 2714
VspI	ATTAAT	1 cut(s)	717
XagI	CCTNNNNNAGG	1 cut(s)	2166
XapI	RAATTY	5 cut(s)	839, 1073, 1991, 2118, 2760
XceI	RCATGY	3 cut(s)	313, 920, 1982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	408
XspI	CTAG	6 cut(s)	362, 969, 1170, 1956, 2735, 2785
ZraI	GACGTC	1 cut(s)	658
ZrmI	AGTACT	1 cut(s)	176
Zsp2I	ATGCAT	2 cut(s)	985, 1495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.