Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001301

Physical Location & Seq

Genomic Coordinates Reverse (-)

5456819 .. 5463520

Gene Structure 6702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3066 bp

ATGGCGGTTGAAGCTTGTTGCTTACGGCTTCTCATGGTACTAGTTGTGTTTCTATTTGCAGAATCCAAGTTCATTGCTTACAACACAACCTCGCAGATTGTGCCCGGAAAGCTTAACGTTCATTTAGTCCCTCACACCCATGACGACGTCGGATGGGTGAAAACCGTTGATCAGTACTACACCGGTGCCAATAACTCCCTCCTGGGGTCTCCCGCTAGTGTTAGAAACGTGTTGGATTCTTTAGTTCCCGCATTGTTGGCTGATAAGAACCGCAAGTTCATATATGCGGAACAGGCATTTTTCCAACTATGGTGGAGAGAACAAAGCGAGGCGATCCAAGACACAGTCAAGCAGCTAGTCAGCTCTGGTCAACTGGAATTCATAAATGGGGGAATGTGCATGCATGATGAGGCTGCTACGCATTACATTGATATGATCGATCAGACAACTCTAGGGCATCGATTTATCAAGCAAGAGTTCAATGTGACTCCAAGAGTTGGCTGGCAAATCGATACTTTTGGACATTCTTCTGTGCAGGCTTACCTTTTGGGGGCCGAGGTTGGTTTTGATTCTCTCTTTTTTGGACGAATTGACTACCAAGACAAGGCTAAGAGAAAAGATGACAAAAGCCTTGAGGTTGTGTGGCGAGGTTCTAAGAGTCTCGGTTCATCTGCACAGATTTTTGCTGGTGCATTCCCTGGGCTATATGTTCCTCCTTCAGATAATTTCTACTTTGAAACTGATGACCCTGCCCCTCTTGTACAAGATGATATGAATCTAGGTGACTACAATATGCCGGAGCGCGTTAATGATTTTGTATCTGAAGCAATATCACAAGCAAATATTACTCGTACAAATCATATCATGTGGACCATGGGAAAAGATTTCGCATATCAATATGCTAATTCATGGTTCCGTCAGATGGACAAATTCATTCATCATGTGAATCAAGATGGGCGTGTCAATGCCCTATACTCAACCCCTTCAATGTACACCAATGCCAAATATGCCACAAATGAGTCCTGGCCAATCAAGAGTGATGACTTCTTTCCATATGCCAGCGATGTGAATGCTTACTGGACTGGATATTTTACAAGCAGGCCAGCCCTCAAACGCTATGTTAGAATGATGAGCAGCTACTACTTGGCAGCGAGGCAATTGGAATTTTTTAAGGGAATACGTAAATCAGGGCCTAACACAGATTCTCTGGCTGACGCTTTAGCAGTTGCTCAACATCATGATGCAGTTAGTGGCACATCTCGGCAGCATGTAGCTGATGATTATACAAAACGACTTTATATAGGTTACAAGGAGGCTGAGAAGGTTGTTGCAGAATCACTTTCTTGCTTGATAAACTCAAGATCAAGCACTGGCTGCAAGAGATTAATAACAAAGTTTCACCAGTGTCCACTTCTGAATATTAGCTATTGCCCCCCGTCAGAAGTTGATCTTACAAAGGGGAAAGACCTGGTTATTGTTGTCTATAACCCTCTGGGATGGAGAAGAAAAGATGTGATAAGGATTCCTGTTGTCAATGAAAATGTCACTGTAAAGGATTCAACAGGAAAGAAAGTTGAATCACAGATTCTACCCCTGCTTAATGCATCTGTCAGCATAAGAGATTACCATGTCAAGGCATATCTGGGTATAGCTCCAAGTGTGACTCCAAGCTATTGGCTTGCATTTTCAGCAACCGTACCACCTCTTGGTTTTAGCACTTACATTGTGTCAAGTGCCGCCACACAGACATCTACCACTTCAAAGAGACATACAGTGTACAAGACAGAAACAAGTCAAGATGAAACCATCAAAGTTGGGCCAGGAAACTTGAAACTCATTTATTCTGGAAATGATGGGGAACTGATTCAGTACACGAACAGCAGAAGCTTGGTCAAAGAGTCGGTAAAGCAATCATTTAGCTATTACCCTGGAGATGATGGTAGTGTGGTGGATTCCTACGGTGAGGATGGAAATCCACGTTTTCAGGCCTCAGGAGCATATATCTTCCGTCCTAATGGTACATATCCCATCAAATCCAAAGAGCAGGTTTCCTTGACTGTTTTAAGGGGACCGTTGTTGGATGAAGTGCATCAAAGGATCAACTCTTGGATATATCAGGTGACTAGAGTGTACAAGGAAAAAGAGCATGCTGAGATTGAATTTATTATCGGGCCTATACCAGCTGATGATGGAATAGGCAAAGAGATTGTAACTAAGATTACAACCAGCATGAGAACCAACAAACAATTCTACACAGATTCTAACGGGCGCGATTTTATTCAGAGAATTCGAGACTACAGAAAAGACTGGAACCTGGAAGTAAATCAACCTGTTGCAGGAAACTATCATCCGATTAATCTGGGAATCTATATGAAAGATAACAACACAGAGCTGTCAGTTTTAGTGGATAGATCTGTAGGGGGATCCAGCATTGTGGACGGGCAGTTGGAACTGATGCTTCATAGGAGGTTGCTTGCAGACGATGACAAAGGTATTGCAGAACAACTAAATGAAACTGTGTGCATTCAAGATGATTGCAAAGGACTAACAATTACAGGGAAGTACCACATGAGAATTGATCCTTTAGGAGAGGGTGCTAAGTGGCGTCGATCATTTGGTCAGGAGATATATTCTCCATTTCTATTAGCCTTCACAGAAAAAGATGGAGATAACTGGACTAGCTCACATGTCACAACCTTTTCAGGAATGGATCCTTCCTATGCTCTACCTGATAACATTGCCTTACTAACCCTCCAGGAGCTGGAAGATGGAAAAGTACTCTTACGCCTGGCGCATTTATACGAGATTGAAGAAGACAAGGATCTTTCAGTGATGGCAAGTGTGGAACTGAAAAAGGTGTTTGCAAACAAAAAGATAAAGCATATAACAGAAATGAGCTTAACTGCTAACCAAGACAGAAGGGAAATGGAGAGGAAGAGACTGGTCTGGAATGTAGAAGGCTCCAACAAAGAACCAAAAGCTTTGAGGGGAGGAGCTGTTGATCCAACAAAGCTGGTGGTGGATCTTGCTCCAATGGAAATTCGAACATTTATAGTCAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

1022

Amino Acids

115.28

Weight (kDa)

6.22

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	39 - 353	4.7e-79	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	358 - 450	3.4e-22	Alpha mannosidase middle domain
Laman-like_dom	PF21260	553 - 576	2.7e-08	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	607 - 828	1.7e-44	Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2	PF17677	912 - 1017	3.9e-09	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13980 AT5G13980 AT5G13980
fragaria_vesca	FvH4_5g09420 FvH4_5g09421 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272 FvH4_6g54272
malus_domestica	MD06G1131600.v1.1 MD09G1002900.v1.1 MD17G1007000.v1.1
prunus_persica	Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.3G313300_v2.0.a1 Prupe.5G142600_v2.0.a1 Prupe.5G142600_v2.0.a1
pyrus_communis	pycom06g12300 pycom06g12310 pycom111g00240 pycom17g00260
rosa_chinensis	RchiOBHm_Chr2g0176471 RchiOBHm_Chr2g0176481 RchiOBHm_Chr7g0188771 RchiOBHm_Chr7g0188781
rosa_laevigata	RLG00000004661 RLG00000004662 RLG00000022416
rosa_multiflora	Rmu_sc0000303.1_g000057 Rmu_sc0003642.1_g000008 Rmu_sc0011904.1_g000012
rosa_roxburghii	Rroxscaffold_2G00076370 Rroxscaffold_3G00266040 Rroxscaffold_3G00266050
rosa_rugosa	Rorug02G0595000 Rorug06G0493700
rosa_samantha	Rh2AG673300 Rh2BG684600 Rh2CG647400 Rh2DG698200 Rh7AG098300 Rh7AG098400 Rh7BG099900 Rh7BG100200 Rh7CG101600 Rh7CG101700 Rh7DG100100 Rh7DG100200
rosa_wichuraiana	Rw0G010390 Rw2G055220 Rw7G008480 Rw7G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	2035
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	3 cut(s)	497, 1706, 2761
AccII	CGCG	2 cut(s)	804, 2271
AciI	CCGC	6 cut(s)	5, 213, 249, 271, 287, 1737
AclI	AACGTT	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	1025
AcsI	RAATTY	6 cut(s)	377, 929, 1163, 2159, 2286, 3039
AcuI	CTGAAG	2 cut(s)	702, 843
AcyI	GRCGYC	2 cut(s)	147, 2605
AfiI	CCNNNNNNNGG	9 cut(s)	204, 497, 550, 604, 922, 1633, 1706, 2336, 2761
AflIII	ACRYGT	2 cut(s)	228, 2686
AgeI	ACCGGT	1 cut(s)	182
AhlI	ACTAGT	1 cut(s)	40
AjnI	CCWGG	9 cut(s)	201, 697, 1022, 1467, 1819, 1927, 2313, 2754, 2787
AjuI	GAANNNNNNNTTGG	2 cut(s)	2231, 2263
Alw26I	GTCTC	5 cut(s)	213, 665, 1759, 2286, 2932
AlwNI	CAGNNNCTG	1 cut(s)	2761
AoxI	GGCC	7 cut(s)	552, 1025, 1100, 1190, 1817, 1986, 2171
ApeKI	GCWGC	6 cut(s)	352, 413, 1134, 1148, 1264, 1374
ApoI	RAATTY	6 cut(s)	377, 929, 1163, 2159, 2286, 3039
AseI	ATTAAT	2 cut(s)	1385, 2355
AsiGI	ACCGGT	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	1863
AspLEI	GCGC	3 cut(s)	804, 2271, 2794
AspS9I	GGNCC	6 cut(s)	552, 870, 1190, 1817, 2069, 2171
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	5 cut(s)	169, 794, 1391, 1973, 2131
AsuII	TTCGAA	1 cut(s)	3043
AvaII	GGWCC	2 cut(s)	870, 2069
AxyI	CCTNAGG	1 cut(s)	1990
BaeGI	GKGCMC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	1027
BamHI	GGATCC	2 cut(s)	2423, 2710
BanI	GGYRCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	2820
BbvI	GCAGC	6 cut(s)	364, 400, 1146, 1160, 1276, 1361
BceAI	ACGGC	1 cut(s)	41
BcgI	CGANNNNNNTGC	2 cut(s)	1052, 1086
BciT130I	CCWGG	9 cut(s)	203, 699, 1024, 1469, 1821, 1929, 2315, 2756, 2789
BclI	TGATCA	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	5 cut(s)	213, 665, 1759, 2286, 2932
BcuI	ACTAGT	1 cut(s)	40
BfaI	CTAG	8 cut(s)	41, 216, 356, 452, 779, 2124, 2679, 3064
BfmI	CTRYAG	2 cut(s)	2296, 2415
BfuAI	ACCTGC	1 cut(s)	2035
BglII	AGATCT	1 cut(s)	2411
BisI	GCNGC	7 cut(s)	353, 414, 1135, 1149, 1265, 1375, 1737
BlsI	GCNGC	7 cut(s)	354, 415, 1136, 1150, 1266, 1376, 1738
BmcAI	AGTACT	2 cut(s)	176, 2778
Bme18I	GGWCC	2 cut(s)	870, 2069
BmgT120I	GGNCC	6 cut(s)	552, 870, 1190, 1817, 2069, 2171
BmiI	GGNNCC	8 cut(s)	187, 553, 914, 2070, 2312, 2425, 2712, 2962
BmsI	GCATC	5 cut(s)	466, 1231, 1613, 2098, 2445
BpiI	GAAGAC	1 cut(s)	2820
BpmI	CTGGAG	2 cut(s)	1950, 2738
Bpu14I	TTCGAA	1 cut(s)	3043
BpuEI	CTTGAG	2 cut(s)	653, 1342
BpuMI	CCSGG	1 cut(s)	105
Bsa29I	ATCGAT	3 cut(s)	438, 460, 510
BsaAI	YACGTR	1 cut(s)	1181
BsaBI	GATNNNNATC	2 cut(s)	774, 1971
BsaHI	GRCGYC	2 cut(s)	147, 2605
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	6 cut(s)	202, 555, 697, 698, 873, 1927
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	4 cut(s)	2736, 2766, 2982, 3012
Bsc4I	CCNNNNNNNGG	9 cut(s)	204, 497, 550, 604, 922, 1633, 1706, 2336, 2761
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	8 cut(s)	378, 1082, 1087, 1375, 1402, 2312, 2678, 2946
Bse21I	CCTNAGG	1 cut(s)	1990
Bse3DI	GCAATG	2 cut(s)	72, 2736
Bse8I	GATNNNNATC	2 cut(s)	774, 1971
BseBI	CCWGG	9 cut(s)	203, 699, 1024, 1469, 1821, 1929, 2315, 2756, 2789
BseCI	ATCGAT	3 cut(s)	438, 460, 510
BseDI	CCNNGG	6 cut(s)	202, 555, 697, 698, 873, 1927
BseGI	GGATG	5 cut(s)	158, 1502, 1972, 2086, 2347
BseJI	GATNNNNATC	2 cut(s)	774, 1971
BseLI	CCNNNNNNNGG	9 cut(s)	204, 497, 550, 604, 922, 1633, 1706, 2336, 2761
BseMI	GCAATG	2 cut(s)	72, 2736
BseMII	CTCAG	3 cut(s)	1308, 2004, 2142
BseNI	ACTGG	8 cut(s)	378, 1082, 1087, 1375, 1402, 2312, 2678, 2946
BseRI	GAGGAG	1 cut(s)	3006
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	6 cut(s)	364, 400, 1146, 1160, 1276, 1361
BsgI	GTGCAG	2 cut(s)	554, 657
Bsh1236I	CGCG	2 cut(s)	804, 2271
BshFI	GGCC	7 cut(s)	554, 1027, 1102, 1192, 1819, 1988, 2173
BshNI	GGYRCC	1 cut(s)	185
BshTI	ACCGGT	1 cut(s)	182
BshVI	ATCGAT	3 cut(s)	438, 460, 510
BsiSI	CCGG	3 cut(s)	105, 183, 797
BslFI	GGGAC	2 cut(s)	113, 2082
BslI	CCNNNNNNNGG	9 cut(s)	204, 497, 550, 604, 922, 1633, 1706, 2336, 2761
BsmAI	GTCTC	5 cut(s)	213, 665, 1759, 2286, 2932
BsmFI	GGGAC	2 cut(s)	113, 2082
BsmI	GAATGC	3 cut(s)	692, 1075, 2523
BsnI	GGCC	7 cut(s)	554, 1027, 1102, 1192, 1819, 1988, 2173
Bso31I	GGTCTC	1 cut(s)	213
Bsp119I	TTCGAA	1 cut(s)	3043
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	4 cut(s)	760, 990, 1776, 2130
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	6 cut(s)	5, 213, 249, 271, 287, 1737
BspANI	GGCC	7 cut(s)	554, 1027, 1102, 1192, 1819, 1988, 2173
BspCNI	CTCAG	3 cut(s)	1309, 2003, 2143
BspDI	ATCGAT	3 cut(s)	438, 460, 510
BspFNI	CGCG	2 cut(s)	804, 2271
BspHI	TCATGA	1 cut(s)	1237
BspLI	GGNNCC	8 cut(s)	187, 553, 914, 2070, 2312, 2425, 2712, 2962
BspMI	ACCTGC	1 cut(s)	2035
BspT104I	TTCGAA	1 cut(s)	3043
BspT107I	GGYRCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	213
BsrDI	GCAATG	2 cut(s)	72, 2736
BsrFI	RCCGGY	1 cut(s)	182
BsrGI	TGTACA	4 cut(s)	760, 990, 1776, 2130
BsrI	ACTGG	8 cut(s)	378, 1082, 1087, 1375, 1402, 2312, 2678, 2946
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	6 cut(s)	202, 555, 697, 698, 873, 1927
BssNI	GRCGYC	2 cut(s)	147, 2605
BssT1I	CCWWGG	1 cut(s)	873
Bst2UI	CCWGG	9 cut(s)	203, 699, 1024, 1469, 1821, 1929, 2315, 2756, 2789
Bst4CI	ACNGT	9 cut(s)	166, 346, 1549, 1696, 1774, 1961, 2059, 2073, 2518
Bst6I	CTCTTC	1 cut(s)	2930
BstACI	GRCGYC	2 cut(s)	147, 2605
BstAPI	GCANNNNNTGC	2 cut(s)	100, 1374
BstAUI	TGTACA	4 cut(s)	760, 990, 1776, 2130
BstBAI	YACGTR	1 cut(s)	1181
BstBI	TTCGAA	1 cut(s)	3043
BstC8I	GCNNGC	9 cut(s)	401, 503, 537, 1060, 1100, 1104, 1680, 2148, 2475
BstDEI	CTNAG	7 cut(s)	609, 654, 1317, 1990, 2151, 2214, 2598
BstDSI	CCRYGG	1 cut(s)	873
BstENI	CCTNNNNNAGG	1 cut(s)	2334
BstF5I	GGATG	5 cut(s)	158, 1502, 1972, 2086, 2347
BstFNI	CGCG	2 cut(s)	804, 2271
BstHHI	GCGC	3 cut(s)	804, 2271, 2794
BstMAI	GTCTC	5 cut(s)	213, 665, 1759, 2286, 2932
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 100, 109, 257, 293, 1007, 1374, 1688, 1994
BstNI	CCWGG	9 cut(s)	203, 699, 1024, 1469, 1821, 1929, 2315, 2756, 2789
BstNSI	RCATGY	4 cut(s)	403, 1271, 2150, 2690
BstSFI	CTRYAG	2 cut(s)	2296, 2415
BstSLI	GKGCMC	1 cut(s)	105
BstSNI	TACGTA	1 cut(s)	1181
BstUI	CGCG	2 cut(s)	804, 2271
BstV1I	GCAGC	6 cut(s)	364, 400, 1146, 1160, 1276, 1361
BstV2I	GAAGAC	1 cut(s)	2820
BstX2I	RGATCY	5 cut(s)	2411, 2423, 2710, 2821, 3022
BstXI	CCANNNNNNTGG	2 cut(s)	1674, 2434
BstYI	RGATCY	5 cut(s)	2411, 2423, 2710, 2821, 3022
Bsu15I	ATCGAT	3 cut(s)	438, 460, 510
Bsu36I	CCTNAGG	1 cut(s)	1990
BsuRI	GGCC	7 cut(s)	554, 1027, 1102, 1192, 1819, 1988, 2173
BsuTUI	ATCGAT	3 cut(s)	438, 460, 510
BtgI	CCRYGG	1 cut(s)	873
BtgZI	GCGATG	1 cut(s)	1077
BtsCI	GGATG	5 cut(s)	158, 1502, 1972, 2086, 2347
BtsIMutI	CAGTG	5 cut(s)	1368, 1409, 1545, 1779, 2835
BveI	ACCTGC	1 cut(s)	2035
Cac8I	GCNNGC	9 cut(s)	401, 503, 537, 1060, 1100, 1104, 1680, 2148, 2475
CaiI	CAGNNNCTG	1 cut(s)	2761
CciI	TCATGA	1 cut(s)	1237
CfoI	GCGC	3 cut(s)	804, 2271, 2794
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	6 cut(s)	552, 870, 1190, 1817, 2069, 2171
ClaI	ATCGAT	3 cut(s)	438, 460, 510
CseI	GACGC	2 cut(s)	1223, 2594
CsiI	ACCWGGT	1 cut(s)	1467
CspAI	ACCGGT	1 cut(s)	182
CspCI	CAANNNNNGTGG	4 cut(s)	293, 328, 2997, 3032
DdeI	CTNAG	7 cut(s)	609, 654, 1317, 1990, 2151, 2214, 2598
EaeI	YGGCCR	1 cut(s)	1025
Eam1104I	CTCTTC	1 cut(s)	2930
EarI	CTCTTC	1 cut(s)	2930
Eco105I	TACGTA	1 cut(s)	1181
Eco130I	CCWWGG	1 cut(s)	873
Eco147I	AGGCCT	1 cut(s)	1988
Eco31I	GGTCTC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	870, 2069
Eco57I	CTGAAG	2 cut(s)	702, 843
Eco81I	CCTNAGG	1 cut(s)	1990
EcoNI	CCTNNNNNAGG	1 cut(s)	2334
EcoO109I	RGGNCCY	1 cut(s)	1190
EcoRI	GAATTC	2 cut(s)	377, 2286
EcoRII	CCWGG	9 cut(s)	201, 697, 1022, 1467, 1819, 1927, 2313, 2754, 2787
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	2 cut(s)	405, 1606
ErhI	CCWWGG	1 cut(s)	873
FalI	AAGNNNNNCTT	2 cut(s)	1434, 1466
FaqI	GGGAC	2 cut(s)	113, 2082
FauI	CCCGC	2 cut(s)	220, 256
FauNDI	CATATG	1 cut(s)	1054
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	7 cut(s)	353, 414, 1135, 1149, 1265, 1375, 1737
FokI	GGATG	5 cut(s)	165, 1509, 1979, 2093, 2334
Fsp4HI	GCNGC	7 cut(s)	353, 414, 1135, 1149, 1265, 1375, 1737
FspBI	CTAG	8 cut(s)	41, 216, 356, 452, 779, 2124, 2679, 3064
GlaI	GCGC	3 cut(s)	803, 2270, 2793
GluI	GCNGC	7 cut(s)	353, 414, 1135, 1149, 1265, 1375, 1737
GsuI	CTGGAG	2 cut(s)	1950, 2738
HaeIII	GGCC	7 cut(s)	554, 1027, 1102, 1192, 1819, 1988, 2173
HapII	CCGG	3 cut(s)	105, 183, 797
HgaI	GACGC	2 cut(s)	1223, 2594
HhaI	GCGC	3 cut(s)	804, 2271, 2794
Hin1I	GRCGYC	2 cut(s)	147, 2605
Hin6I	GCGC	3 cut(s)	802, 2269, 2792
HinP1I	GCGC	3 cut(s)	802, 2269, 2792
HincII	GTYRAC	2 cut(s)	371, 3058
HindII	GTYRAC	2 cut(s)	371, 3058
HindIII	AAGCTT	4 cut(s)	12, 110, 1885, 2979
HpaII	CCGG	3 cut(s)	105, 183, 797
HphI	GGTGA	5 cut(s)	169, 794, 1391, 1973, 2131
Hpy166II	GTNNAC	9 cut(s)	371, 870, 993, 1409, 1777, 1872, 2131, 2437, 3058
Hpy188I	TCNGA	9 cut(s)	152, 444, 721, 823, 921, 1416, 1441, 2283, 2352
Hpy8I	GTNNAC	9 cut(s)	371, 870, 993, 1409, 1777, 1872, 2131, 2437, 3058
Hpy99I	CGWCG	3 cut(s)	149, 152, 2610
HpyAV	CCTTC	7 cut(s)	726, 993, 1315, 2659, 2724, 2913, 2951
HpyCH4III	ACNGT	9 cut(s)	166, 346, 1549, 1696, 1774, 1961, 2059, 2073, 2518
HpyCH4IV	ACGT	5 cut(s)	117, 147, 228, 1180, 1978
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 100, 109, 257, 293, 1007, 1374, 1688, 1994
HpyF3I	CTNAG	7 cut(s)	609, 654, 1317, 1990, 2151, 2214, 2598
HpySE526I	ACGT	5 cut(s)	117, 147, 228, 1180, 1978
Hsp92I	GRCGYC	2 cut(s)	147, 2605
HspAI	GCGC	3 cut(s)	802, 2269, 2792
Ksp22I	TGATCA	1 cut(s)	169
LmnI	GCTCC	7 cut(s)	799, 1657, 1994, 2758, 2966, 2993, 3034
Lsp1109I	GCAGC	6 cut(s)	364, 400, 1146, 1160, 1276, 1361
LweI	GCATC	5 cut(s)	466, 1231, 1613, 2098, 2445
MabI	ACCWGGT	1 cut(s)	1467
MaeI	CTAG	8 cut(s)	41, 216, 356, 452, 779, 2124, 2679, 3064
MaeII	ACGT	5 cut(s)	117, 147, 228, 1180, 1978
MaeIII	GTNAC	8 cut(s)	484, 782, 1304, 1543, 1660, 2119, 2209, 2689
MboII	GAAGA	7 cut(s)	519, 1515, 1996, 2777, 2822, 2825, 2947
MfeI	CAATTG	1 cut(s)	1157
MflI	RGATCY	5 cut(s)	2411, 2423, 2710, 2821, 3022
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	1027
MluNI	TGGCCA	1 cut(s)	1027
MlyI	GAGTC	5 cut(s)	481, 667, 1028, 1657, 1907
MmeI	TCCRAC	7 cut(s)	130, 213, 328, 2058, 2427, 2988, 3029
Mox20I	TGGCCA	1 cut(s)	1027
Mph1103I	ATGCAT	2 cut(s)	405, 1606
MroXI	GAANNNNTTC	1 cut(s)	1863
MscI	TGGCCA	1 cut(s)	1027
MseI	TTAA	8 cut(s)	114, 807, 1170, 1385, 1599, 2063, 2355, 2900
MslI	CAYNNNNRTG	3 cut(s)	138, 431, 1239
Msp20I	TGGCCA	1 cut(s)	1027
MspA1I	CMGCKG	1 cut(s)	2183
MspI	CCGG	3 cut(s)	105, 183, 797
MunI	CAATTG	1 cut(s)	1157
Mva1269I	GAATGC	3 cut(s)	692, 1075, 2523
MvaI	CCWGG	9 cut(s)	203, 699, 1024, 1469, 1821, 1929, 2315, 2756, 2789
MvnI	CGCG	2 cut(s)	804, 2271
MwoI	GCNNNNNNNGC	9 cut(s)	11, 100, 109, 257, 293, 1007, 1374, 1688, 1994
NciI	CCSGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	873
NdeI	CATATG	1 cut(s)	1054
NlaIV	GGNNCC	8 cut(s)	187, 553, 914, 2070, 2312, 2425, 2712, 2962
NmeAIII	GCCGAG	2 cut(s)	580, 1240
NmuCI	GTSAC	6 cut(s)	484, 782, 1543, 1660, 2119, 2689
NsiI	ATGCAT	2 cut(s)	405, 1606
NspI	RCATGY	4 cut(s)	403, 1271, 2150, 2690
NspV	TTCGAA	1 cut(s)	3043
PaeI	GCATGC	2 cut(s)	403, 2150
PagI	TCATGA	1 cut(s)	1237
PasI	CCCWGGG	1 cut(s)	698
PceI	AGGCCT	1 cut(s)	1988
PciI	ACATGT	1 cut(s)	2686
PctI	GAATGC	3 cut(s)	692, 1075, 2523
PdmI	GAANNNNTTC	1 cut(s)	1863
PflFI	GACNNNGTC	2 cut(s)	146, 344
PflMI	CCANNNNNTGG	3 cut(s)	497, 1706, 2761
PfoI	TCCNGGA	1 cut(s)	2754
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	7 cut(s)	354, 415, 1136, 1150, 1266, 1376, 1738
PleI	GAGTC	5 cut(s)	481, 666, 1027, 1657, 1906
PpsI	GAGTC	5 cut(s)	481, 666, 1027, 1657, 1906
Ppu21I	YACGTR	1 cut(s)	1181
PscI	ACATGT	1 cut(s)	2686
PshBI	ATTAAT	2 cut(s)	1385, 2355
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	9 cut(s)	201, 697, 1022, 1467, 1819, 1927, 2313, 2754, 2787
PspGI	CCWGG	9 cut(s)	201, 697, 1022, 1467, 1819, 1927, 2313, 2754, 2787
PspN4I	GGNNCC	8 cut(s)	187, 553, 914, 2070, 2312, 2425, 2712, 2962
PspPI	GGNCC	6 cut(s)	552, 870, 1190, 1817, 2069, 2171
PstNI	CAGNNNCTG	1 cut(s)	2761
PsuI	RGATCY	5 cut(s)	2411, 2423, 2710, 2821, 3022
PsyI	GACNNNGTC	2 cut(s)	146, 344
PvuII	CAGCTG	1 cut(s)	2183
RseI	CAYNNNNRTG	3 cut(s)	138, 431, 1239
SaqAI	TTAA	8 cut(s)	114, 807, 1170, 1385, 1599, 2063, 2355, 2900
SatI	GCNGC	7 cut(s)	353, 414, 1135, 1149, 1265, 1375, 1737
Sau96I	GGNCC	6 cut(s)	552, 870, 1190, 1817, 2069, 2171
ScaI	AGTACT	2 cut(s)	176, 2778
SchI	GAGTC	5 cut(s)	481, 667, 1028, 1657, 1907
SduI	GDGCHC	1 cut(s)	105
SexAI	ACCWGGT	1 cut(s)	1467
SfaNI	GCATC	5 cut(s)	466, 1231, 1613, 2098, 2445
SfcI	CTRYAG	2 cut(s)	2296, 2415
SfuI	TTCGAA	1 cut(s)	3043
SgrAI	CRCCGGYG	1 cut(s)	182
SinI	GGWCC	2 cut(s)	870, 2069
SmiMI	CAYNNNNRTG	3 cut(s)	138, 431, 1239
SmlI	CTYRAG	2 cut(s)	632, 1357
SmoI	CTYRAG	2 cut(s)	632, 1357
SnaBI	TACGTA	1 cut(s)	1181
SpeI	ACTAGT	1 cut(s)	40
SphI	GCATGC	2 cut(s)	403, 2150
SseBI	AGGCCT	1 cut(s)	1988
SsiI	CCGC	6 cut(s)	5, 213, 249, 271, 287, 1737
SspI	AATATT	2 cut(s)	844, 1420
SspMI	CTAG	8 cut(s)	41, 216, 356, 452, 779, 2124, 2679, 3064
StuI	AGGCCT	1 cut(s)	1988
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	9 cut(s)	166, 346, 1549, 1696, 1774, 1961, 2059, 2073, 2518
TaiI	ACGT	5 cut(s)	120, 150, 231, 1183, 1981
TaqI	TCGA	6 cut(s)	438, 460, 510, 2290, 2608, 3043
TatI	WGTACW	7 cut(s)	174, 760, 990, 1776, 1869, 2130, 2776
TauI	GCSGC	1 cut(s)	1739
Tru1I	TTAA	8 cut(s)	114, 807, 1170, 1385, 1599, 2063, 2355, 2900
Tru9I	TTAA	8 cut(s)	114, 807, 1170, 1385, 1599, 2063, 2355, 2900
TscAI	CASTG	5 cut(s)	1375, 1409, 1552, 1779, 2835
TseFI	GTSAC	6 cut(s)	484, 782, 1543, 1660, 2119, 2689
TseI	GCWGC	6 cut(s)	352, 413, 1134, 1148, 1264, 1374
Tsp45I	GTSAC	6 cut(s)	484, 782, 1543, 1660, 2119, 2689
TspGWI	ACGGA	2 cut(s)	905, 1997
TspRI	CASTG	5 cut(s)	1375, 1409, 1552, 1779, 2835
Tth111I	GACNNNGTC	2 cut(s)	146, 344
Van91I	CCANNNNNTGG	3 cut(s)	497, 1706, 2761
VpaK11BI	GGWCC	2 cut(s)	870, 2069
VspI	ATTAAT	2 cut(s)	1385, 2355
XagI	CCTNNNNNAGG	1 cut(s)	2334
XapI	RAATTY	6 cut(s)	377, 929, 1163, 2159, 2286, 3039
XceI	RCATGY	4 cut(s)	403, 1271, 2150, 2690
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	1863
XspI	CTAG	8 cut(s)	41, 216, 356, 452, 779, 2124, 2679, 3064
ZraI	GACGTC	1 cut(s)	148
ZrmI	AGTACT	2 cut(s)	176, 2778
Zsp2I	ATGCAT	2 cut(s)	405, 1606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.