Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Forward (+)

17852911 .. 17854521

Gene Structure 1611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44316.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGCGTCTCTTTTCGCAATCGGTTTCTCCAAATTTTCTCCACAACCCACTTCCGATTATTCCAAATTACTAAAAGTGTTTCATCCAAAACCCTATTCCTTGAAATTTCTATTTCTCAAAACCCTAAATCCTACTAGGTTTTTCAAAGTCAGAGCCAATGATGGAACCGAACCATCTGATAAACTTCAACAGTATTTCCAGAATCAAGATTACGATAAGAAATACGGATTCCTTGAAAACATCGATTCCTTCACAATCCCTAAAGGTTTATCTGAAGAAACGATTCGCTTGATATCGAAGTTGAAAAAGGAACCAGCTTGGATTCTTGAGTATAGGCTCAAAGCTTATGCTAAGTTTCTAAAATTAGAAGAACCTAAATGGTCAGATAATAGGTACCCTTTGCTTGATCTCCAAGATATGTGTTTTTACTCTGCTCCTAAAAAGAAACCAACTTTGAATAGTTCAGATATAGCTGATGAAGCTGATGATCCTAAGCTTCTTGAGGAATTTGATAGATTAGATGTTCCTTTAACAAAGAAGAAGAAATGTTCACCTAAAGTTGCGGTTGATGCGGTTTATAATAGTGAATCGATAGCTATTACTAATAAGGAGCCTCTAGAGAAGTCAGGTGTGATCTTCTGTTCGATATCCGAAGCTATAAGGAAGTATCCGGATTTGATCAAGAAGTATTTAGGAAGAGTTGTGCCTAGTGATGATAACTACTACGCGGCTTTGAATACCGCGGTTTTCAGCGATGGATCGTTCTGTTATATACCGAAAAACACTAGATGTCCGATGCCTCTTTCGAGTTATTTTCGGATGAATTCTATTGAAAACACTGGTCAGTTTGAAAGAACTTTGATTGTTGCTGAGGAAGGTAGTTTTGTTGAGTATTCAGAAGGATGCACTGCTATTTCTCATGACAAGAATCAGCTTCACGCTGCTGTTGTTGAGCTCTATTGCGCTGAAGGAGCGGAGATTAAGTACTCGACGCGTGGTCTCTGCGCTGGTGATCGTTCCAAGATCTCATGGACTCAAGTTGAGAAAGGGTTCGCGATAACTTGGAAGTATCCAAGCGTGGTTTTAGAAGGAGATGATTCCGTTGGAGAAGCTGAGAACGCTAGAAATACTTCGACTTGTGACTCGATGCTTATTGGTGACAATGCAGCCGCTAATACATATCCTTACATACAGGTAAAGAATCCATCGGCGAGAATAGAGCATGAAGCAAGTACTTCAAAGATTGGAGAAGATCAGATTTTCTATTTTCAACAGAGAGGTATCGATCATGAGAGAGCATTAGCGGCAATGATCTCTGGATTTTGCAGAGATGTTTTCAACAAGTTGCCTAATGAATTTGGAGCCGAAGTTAACCAGCTTTTGAGCATTAAGCTTGAAGGATCAGTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0030003 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048583 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

470

Amino Acids

53.09

Weight (kDa)

5.94

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufBD_N	PF19295	201 - 267	1.6e-12	SufBD protein N-terminal region
SUFBD_core	PF01458	272 - 371	1.3e-14	SUF system FeS cluster assembly, SufBD core domain
SUFBD_core	PF01458	370 - 441	1.5e-19	SUF system FeS cluster assembly, SufBD core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
Acc65I	GGTACC	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	393
AccBSI	CCGCTC	1 cut(s)	974
AccII	CGCG	4 cut(s)	728, 743, 994, 1055
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	8 cut(s)	563, 572, 728, 741, 743, 974, 1170, 1304
AclWI	GGATC	3 cut(s)	482, 766, 1408
AcsI	RAATTY	5 cut(s)	32, 104, 506, 823, 1355
AcuI	CTGAAG	2 cut(s)	294, 987
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	395, 986, 1234
AflIII	ACRYGT	1 cut(s)	992
AhdI	GACNNNNNGTC	1 cut(s)	996
AjuI	GAANNNNNNNTTGG	2 cut(s)	79, 111
Alw21I	GWGCWC	1 cut(s)	957
Alw26I	GTCTC	2 cut(s)	12, 1004
AlwI	GGATC	3 cut(s)	482, 766, 1408
Aor13HI	TCCGGA	1 cut(s)	670
ApeKI	GCWGC	2 cut(s)	941, 1166
ApoI	RAATTY	5 cut(s)	32, 104, 506, 823, 1355
Asp700I	GAANNNNTTC	3 cut(s)	282, 1049, 1129
Asp718I	GGTACC	1 cut(s)	393
AspLEI	GCGC	2 cut(s)	965, 1007
AsuHPI	GGTGA	3 cut(s)	543, 1022, 1169
BanI	GGYRCC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	957
Bbv12I	GWGCWC	1 cut(s)	957
BbvCI	CCTCAGC	1 cut(s)	870
BbvI	GCAGC	2 cut(s)	928, 1178
BccI	CCATC	4 cut(s)	155, 181, 749, 1213
BciVI	GTATCC	2 cut(s)	678, 1080
BclI	TGATCA	1 cut(s)	678
BcoDI	GTCTC	2 cut(s)	12, 1004
BfaI	CTAG	5 cut(s)	135, 617, 708, 786, 1122
BfuI	GTATCC	2 cut(s)	678, 1080
BglII	AGATCT	1 cut(s)	1023
BisI	GCNGC	5 cut(s)	729, 942, 1167, 1170, 1305
BlsI	GCNGC	5 cut(s)	730, 943, 1168, 1171, 1306
BmcAI	AGTACT	2 cut(s)	986, 1234
BmeRI	GACNNNNNGTC	1 cut(s)	996
BmiI	GGNNCC	5 cut(s)	166, 312, 395, 612, 1363
BmsI	GCATC	4 cut(s)	559, 786, 893, 1137
Bpu10I	CCTNAGC	2 cut(s)	492, 870
BpuEI	CTTGAG	3 cut(s)	347, 521, 1020
Bsa29I	ATCGAT	3 cut(s)	243, 590, 1284
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	1004
BsaJI	CCNNGG	1 cut(s)	741
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	4 cut(s)	968, 998, 1353, 1383
Bse1I	ACTGG	1 cut(s)	844
Bse3DI	GCAATG	1 cut(s)	1314
BseAI	TCCGGA	1 cut(s)	670
BseCI	ATCGAT	3 cut(s)	243, 590, 1284
BseDI	CCNNGG	1 cut(s)	741
BseGI	GGATG	3 cut(s)	82, 825, 908
BseMI	GCAATG	1 cut(s)	1314
BseMII	CTCAG	2 cut(s)	861, 1104
BseNI	ACTGG	1 cut(s)	844
BseXI	GCAGC	2 cut(s)	928, 1178
Bsh1236I	CGCG	4 cut(s)	728, 743, 994, 1055
BshNI	GGYRCC	1 cut(s)	393
BshVI	ATCGAT	3 cut(s)	243, 590, 1284
BsiHKAI	GWGCWC	1 cut(s)	957
BsiSI	CCGG	1 cut(s)	671
BsmAI	GTCTC	2 cut(s)	12, 1004
BsmBI	CGTCTC	1 cut(s)	12
Bso31I	GGTCTC	1 cut(s)	1004
Bsp1286I	GDGCHC	1 cut(s)	957
Bsp13I	TCCGGA	1 cut(s)	670
Bsp68I	TCGCGA	1 cut(s)	1055
BspACI	CCGC	8 cut(s)	563, 572, 728, 741, 743, 974, 1170, 1304
BspCNI	CTCAG	2 cut(s)	862, 1105
BspDI	ATCGAT	3 cut(s)	243, 590, 1284
BspEI	TCCGGA	1 cut(s)	670
BspFNI	CGCG	4 cut(s)	728, 743, 994, 1055
BspHI	TCATGA	2 cut(s)	919, 1288
BspLI	GGNNCC	5 cut(s)	166, 312, 395, 612, 1363
BspPI	GGATC	3 cut(s)	482, 766, 1408
BspT107I	GGYRCC	1 cut(s)	393
BspTNI	GGTCTC	1 cut(s)	1004
BsrBI	CCGCTC	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	1314
BsrI	ACTGG	1 cut(s)	844
BssECI	CCNNGG	1 cut(s)	741
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	691
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	4 cut(s)	351, 492, 870, 1113
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	3 cut(s)	82, 825, 908
BstFNI	CGCG	4 cut(s)	728, 743, 994, 1055
BstHHI	GCGC	2 cut(s)	965, 1007
BstMAI	GTCTC	2 cut(s)	12, 1004
BstMWI	GCNNNNNNNGC	5 cut(s)	479, 569, 971, 1118, 1304
BstUI	CGCG	4 cut(s)	728, 743, 994, 1055
BstV1I	GCAGC	2 cut(s)	928, 1178
BstX2I	RGATCY	1 cut(s)	1023
BstYI	RGATCY	1 cut(s)	1023
Bsu15I	ATCGAT	3 cut(s)	243, 590, 1284
BsuI	GTATCC	2 cut(s)	678, 1080
BsuTUI	ATCGAT	3 cut(s)	243, 590, 1284
BtgI	CCRYGG	1 cut(s)	741
BtgZI	GCGATG	1 cut(s)	768
BtsCI	GGATG	3 cut(s)	82, 825, 908
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	3 cut(s)	837, 906, 1410
BtuMI	TCGCGA	1 cut(s)	1055
CciI	TCATGA	2 cut(s)	919, 1288
CfoI	GCGC	2 cut(s)	965, 1007
Cfr42I	CCGCGG	1 cut(s)	744
ClaI	ATCGAT	3 cut(s)	243, 590, 1284
CseI	GACGC	1 cut(s)	1000
Csp6I	GTAC	3 cut(s)	394, 985, 1233
CviAII	CATG	4 cut(s)	920, 1029, 1223, 1289
CviQI	GTAC	3 cut(s)	394, 985, 1233
DdeI	CTNAG	4 cut(s)	351, 492, 870, 1113
DriI	GACNNNNNGTC	1 cut(s)	996
Eam1104I	CTCTTC	1 cut(s)	691
Eam1105I	GACNNNNNGTC	1 cut(s)	996
EarI	CTCTTC	1 cut(s)	691
Ecl136II	GAGCTC	1 cut(s)	955
Eco24I	GRGCYC	1 cut(s)	957
Eco31I	GGTCTC	1 cut(s)	1004
Eco32I	GATATC	2 cut(s)	294, 648
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	2 cut(s)	294, 987
EcoICRI	GAGCTC	1 cut(s)	955
EcoRI	GAATTC	1 cut(s)	823
EcoRV	GATATC	2 cut(s)	294, 648
EcoT38I	GRGCYC	1 cut(s)	957
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	4 cut(s)	923, 1032, 1226, 1292
FatI	CATG	4 cut(s)	919, 1028, 1222, 1288
FbaI	TGATCA	1 cut(s)	678
Fnu4HI	GCNGC	5 cut(s)	729, 942, 1167, 1170, 1305
FokI	GGATG	3 cut(s)	69, 832, 915
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	5 cut(s)	729, 942, 1167, 1170, 1305
FspBI	CTAG	5 cut(s)	135, 617, 708, 786, 1122
GlaI	GCGC	2 cut(s)	964, 1006
GluI	GCNGC	5 cut(s)	729, 942, 1167, 1170, 1305
HapII	CCGG	1 cut(s)	671
HgaI	GACGC	1 cut(s)	1000
HhaI	GCGC	2 cut(s)	965, 1007
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	923, 1032, 1226, 1292
Hin6I	GCGC	2 cut(s)	963, 1005
HinP1I	GCGC	2 cut(s)	963, 1005
HincII	GTYRAC	1 cut(s)	1372
HindII	GTYRAC	1 cut(s)	1372
HindIII	AAGCTT	3 cut(s)	342, 494, 1391
HpaI	GTTAAC	1 cut(s)	1372
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	3 cut(s)	543, 1022, 1169
Hpy166II	GTNNAC	2 cut(s)	551, 1372
Hpy8I	GTNNAC	2 cut(s)	551, 1372
Hpy99I	CGWCG	1 cut(s)	994
HpyAV	CCTTC	6 cut(s)	259, 869, 893, 962, 1082, 1391
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	906, 1166, 1326
HpyF10VI	GCNNNNNNNGC	5 cut(s)	479, 569, 971, 1118, 1304
HpyF3I	CTNAG	4 cut(s)	351, 492, 870, 1113
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	923, 1032, 1226, 1292
HspAI	GCGC	2 cut(s)	963, 1005
Kpn2I	TCCGGA	1 cut(s)	670
KpnI	GGTACC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	678
KspAI	GTTAAC	1 cut(s)	1372
KspI	CCGCGG	1 cut(s)	744
LmnI	GCTCC	4 cut(s)	439, 610, 971, 1361
LpnPI	CCDG	9 cut(s)	212, 327, 612, 684, 825, 993, 1178, 1302, 1388
Lsp1109I	GCAGC	2 cut(s)	928, 1178
LweI	GCATC	4 cut(s)	559, 786, 893, 1137
MaeI	CTAG	5 cut(s)	135, 617, 708, 786, 1122
MaeIII	GTNAC	2 cut(s)	1139, 1157
MbiI	CCGCTC	1 cut(s)	974
MboII	GAAGA	7 cut(s)	287, 380, 550, 553, 628, 708, 1262
MflI	RGATCY	1 cut(s)	1023
MhlI	GDGCHC	1 cut(s)	957
MluCI	AATT	7 cut(s)	32, 65, 104, 362, 506, 823, 1355
MluI	ACGCGT	1 cut(s)	992
MlyI	GAGTC	2 cut(s)	1027, 1136
MmeI	TCCRAC	1 cut(s)	1084
MnlI	CCTC	5 cut(s)	496, 624, 810, 865, 1271
MroI	TCCGGA	1 cut(s)	670
MroXI	GAANNNNTTC	3 cut(s)	282, 1049, 1129
MseI	TTAA	5 cut(s)	530, 981, 1371, 1389, 1411
MspA1I	CMGCKG	1 cut(s)	743
MspI	CCGG	1 cut(s)	671
MvnI	CGCG	4 cut(s)	728, 743, 994, 1055
MwoI	GCNNNNNNNGC	5 cut(s)	479, 569, 971, 1118, 1304
NlaIII	CATG	4 cut(s)	923, 1032, 1226, 1292
NlaIV	GGNNCC	5 cut(s)	166, 312, 395, 612, 1363
NmuCI	GTSAC	2 cut(s)	1139, 1157
NruI	TCGCGA	1 cut(s)	1055
PagI	TCATGA	2 cut(s)	919, 1288
PdmI	GAANNNNTTC	3 cut(s)	282, 1049, 1129
PfeI	GAWTC	9 cut(s)	202, 228, 245, 283, 322, 587, 928, 1097, 1201
PkrI	GCNGC	5 cut(s)	730, 943, 1168, 1171, 1306
PleI	GAGTC	2 cut(s)	1027, 1136
PpsI	GAGTC	2 cut(s)	1027, 1136
PsiI	TTATAA	1 cut(s)	579
Psp124BI	GAGCTC	1 cut(s)	957
PspN4I	GGNNCC	5 cut(s)	166, 312, 395, 612, 1363
PsuI	RGATCY	1 cut(s)	1023
RruI	TCGCGA	1 cut(s)	1055
RsaI	GTAC	3 cut(s)	395, 986, 1234
RsaNI	GTAC	3 cut(s)	394, 985, 1233
SacI	GAGCTC	1 cut(s)	957
SacII	CCGCGG	1 cut(s)	744
SaqAI	TTAA	5 cut(s)	530, 981, 1371, 1389, 1411
SatI	GCNGC	5 cut(s)	729, 942, 1167, 1170, 1305
ScaI	AGTACT	2 cut(s)	986, 1234
SchI	GAGTC	2 cut(s)	1027, 1136
SduI	GDGCHC	1 cut(s)	957
SfaNI	GCATC	4 cut(s)	559, 786, 893, 1137
Sfr303I	CCGCGG	1 cut(s)	744
SgrBI	CCGCGG	1 cut(s)	744
SmlI	CTYRAG	3 cut(s)	326, 500, 1035
SmoI	CTYRAG	3 cut(s)	326, 500, 1035
Sse9I	AATT	7 cut(s)	32, 65, 104, 362, 506, 823, 1355
SsiI	CCGC	8 cut(s)	563, 572, 728, 741, 743, 974, 1170, 1304
SspMI	CTAG	5 cut(s)	135, 617, 708, 786, 1122
SstI	GAGCTC	1 cut(s)	957
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	9 cut(s)	243, 296, 590, 644, 806, 989, 1133, 1145, 1284
TasI	AATT	7 cut(s)	32, 65, 104, 362, 506, 823, 1355
TatI	WGTACW	2 cut(s)	984, 1232
TauI	GCSGC	3 cut(s)	731, 1172, 1307
TfiI	GAWTC	9 cut(s)	202, 228, 245, 283, 322, 587, 928, 1097, 1201
Tru1I	TTAA	5 cut(s)	530, 981, 1371, 1389, 1411
Tru9I	TTAA	5 cut(s)	530, 981, 1371, 1389, 1411
TscAI	CASTG	3 cut(s)	844, 913, 1410
TseFI	GTSAC	2 cut(s)	1139, 1157
TseI	GCWGC	2 cut(s)	941, 1166
Tsp45I	GTSAC	2 cut(s)	1139, 1157
TspDTI	ATGAA	5 cut(s)	71, 492, 836, 1239, 1368
TspGWI	ACGGA	2 cut(s)	240, 1090
TspRI	CASTG	3 cut(s)	844, 913, 1410
XapI	RAATTY	5 cut(s)	32, 104, 506, 823, 1355
XbaI	TCTAGA	1 cut(s)	616
XmnI	GAANNNNTTC	3 cut(s)	282, 1049, 1129
XspI	CTAG	5 cut(s)	135, 617, 708, 786, 1122
ZrmI	AGTACT	2 cut(s)	986, 1234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.