Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001292.1

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Forward (+)

121965 .. 124598

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001292.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgaattcgagaagcttctggcagcagaaactcttggagtcctctgataaagactcgaacaccaagtccttcctgaccagagctcctccgctgctcccgaccaaagcagattccacctccgccgtcgaccagagctctgattttgatctccagaccctccactttaagcctgtgatggttgtaggttttgtcgttttggttttggggagacgctatagggagagtgaggagattttggtcaagaatccttcagctcgcattgaacatgaagccagtacctccaaaattggtgaagaccagcaagtttactttcagcaaaggggaatagactatgagaaagccatggctgccatgatatctcatttttgccaggcagtattcagtgagcttcctgatgagtttgggtcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0030003 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048583 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

136

Amino Acids

15.4

Weight (kDa)

5.34

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	2 cut(s)	89, 120
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	369
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	5 cut(s)	15, 83, 135, 254, 388
AluI	AGCT	5 cut(s)	15, 83, 135, 254, 388
Alw21I	GWGCWC	2 cut(s)	85, 137
Alw26I	GTCTC	1 cut(s)	202
ApeKI	GCWGC	3 cut(s)	22, 91, 347
ApoI	RAATTY	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AsuHPI	GGTGA	1 cut(s)	302
BanII	GRGCYC	2 cut(s)	85, 137
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	2 cut(s)	85, 137
BbvI	GCAGC	3 cut(s)	34, 78, 334
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	202
BfmI	CTRYAG	1 cut(s)	214
BisI	GCNGC	3 cut(s)	23, 92, 348
BlsI	GCNGC	3 cut(s)	24, 93, 349
Bme1390I	CCNGG	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bse1I	ACTGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	342
BseJI	GATNNNNATC	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	2 cut(s)	75, 242
BseXI	GCAGC	3 cut(s)	34, 78, 334
BsiHKAI	GWGCWC	2 cut(s)	85, 137
BsmAI	GTCTC	1 cut(s)	202
BsmBI	CGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	85, 137
Bsp143I	GATC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	2 cut(s)	89, 120
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	342
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	214
BstV1I	GCAGC	3 cut(s)	34, 78, 334
BstV2I	GAAGAC	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	256
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	3 cut(s)	266, 343, 352
CviJI	RGCY	9 cut(s)	15, 83, 135, 169, 254, 272, 341, 347, 388
CviKI_1	RGCY	9 cut(s)	15, 83, 135, 169, 254, 272, 341, 347, 388
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	109
Ecl136II	GAGCTC	2 cut(s)	83, 135
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	2 cut(s)	85, 137
Eco32I	GATATC	1 cut(s)	357
Eco53kI	GAGCTC	2 cut(s)	83, 135
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	2 cut(s)	83, 135
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	2 cut(s)	85, 137
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	3 cut(s)	269, 346, 355
FaiI	YATR	5 cut(s)	216, 267, 333, 344, 353
FatI	CATG	3 cut(s)	265, 342, 351
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	23, 92, 348
FriOI	GRGCYC	2 cut(s)	85, 137
Fsp4HI	GCNGC	3 cut(s)	23, 92, 348
GluI	GCNGC	3 cut(s)	23, 92, 348
GsuI	CTGGAG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	269, 346, 355
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	4 cut(s)	38, 53, 110, 244
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	2 cut(s)	127, 307
Hpy188I	TCNGA	2 cut(s)	46, 139
Hpy188III	TCNNGA	6 cut(s)	9, 73, 97, 151, 241, 392
Hpy8I	GTNNAC	2 cut(s)	127, 307
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	79, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	3 cut(s)	269, 346, 355
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	2 cut(s)	88, 99
Lsp1109I	GCAGC	3 cut(s)	34, 78, 334
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	305
MhlI	GDGCHC	2 cut(s)	85, 137
MluCI	AATT	2 cut(s)	4, 285
MlyI	GAGTC	2 cut(s)	47, 47
MnlI	CCTC	6 cut(s)	52, 96, 127, 167, 220, 289
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	3 cut(s)	269, 346, 355
PfeI	GAWTC	2 cut(s)	110, 244
PkrI	GCNGC	3 cut(s)	24, 93, 349
PleI	GAGTC	2 cut(s)	46, 47
PpsI	GAGTC	2 cut(s)	46, 47
Psp124BI	GAGCTC	2 cut(s)	85, 137
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SacI	GAGCTC	2 cut(s)	85, 137
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	3 cut(s)	23, 92, 348
Sau3AI	GATC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	47, 47
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	2 cut(s)	85, 137
SetI	ASST	8 cut(s)	17, 85, 119, 137, 187, 256, 281, 390
SfcI	CTRYAG	1 cut(s)	214
Sse9I	AATT	2 cut(s)	4, 285
SsiI	CCGC	2 cut(s)	89, 120
SstI	GAGCTC	2 cut(s)	85, 137
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	342
TaqI	TCGA	3 cut(s)	8, 56, 126
TasI	AATT	2 cut(s)	4, 285
TfiI	GAWTC	2 cut(s)	110, 244
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	3 cut(s)	22, 91, 347
TspDTI	ATGAA	2 cut(s)	17, 282
TspRI	CASTG	1 cut(s)	388
XapI	RAATTY	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.