Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002077.1

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

21154 .. 22146

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002077.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgtgttattcgatctggcaaatagcgaaggccttcatcgacgaccactttgagctcgccgttgacctctacacccaggcgatcgctgttgaccccaacaactctgagttctactctaaccgcgctcaggccaacatcaaatccaaccatctcaccggctgttctttggtggaagttatgggggtcaaagatttgggatttgagaagctccaaggaccagttgggactatcactgaaggagagaattccgccaaggaaaatgggaaactggaagaagggtcaggccataatgagcccataaaatttggatcacatggtgatgaaatggctaaaaaggaaaggaatggggtcaacggcgatggaacttgtgagacttctccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.78

Weight (kDa)

4.79

Isoelectric Point (pI)

18.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AciI	CCGC	2 cut(s)	121, 249
AclWI	GGATC	1 cut(s)	316
AcsI	RAATTY	2 cut(s)	244, 302
AcuI	CTGAAG	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	2 cut(s)	55, 208
AluI	AGCT	2 cut(s)	55, 208
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	3 cut(s)	30, 129, 283
ApoI	RAATTY	2 cut(s)	244, 302
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AsiSI	GCGATCGC	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	145, 329
AvaII	GGWCC	1 cut(s)	215
BanII	GRGCYC	2 cut(s)	57, 297
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	2 cut(s)	156, 353
BceAI	ACGGC	2 cut(s)	44, 370
BciT130I	CCWGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu10I	CCTNAGC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	75, 211, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	218, 273
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	3 cut(s)	75, 211, 252
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	96, 140
BseNI	ACTGG	2 cut(s)	218, 273
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	32, 131, 285
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	32, 131, 285
Bsp1286I	GDGCHC	2 cut(s)	57, 297
Bsp143I	GATC	3 cut(s)	12, 81, 308
BspACI	CCGC	2 cut(s)	121, 249
BspANI	GGCC	3 cut(s)	32, 131, 285
BspCNI	CTCAG	2 cut(s)	97, 139
BspFNI	CGCG	1 cut(s)	123
BspPI	GGATC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	218, 273
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	75, 211, 252
BssMI	GATC	3 cut(s)	12, 81, 308
BssT1I	CCWWGG	2 cut(s)	211, 252
Bst2UI	CCWGG	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	105, 126, 381
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	3 cut(s)	15, 84, 311
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	12, 81, 308
BstMCI	CGRYCG	1 cut(s)	84
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	32, 131, 285
BtgZI	GCGATG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	215
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	8 cut(s)	32, 55, 131, 159, 208, 285, 295, 329
CviKI_1	RGCY	8 cut(s)	32, 55, 131, 159, 208, 285, 295, 329
DdeI	CTNAG	3 cut(s)	105, 126, 381
DpnI	GATC	3 cut(s)	14, 83, 310
DpnII	GATC	3 cut(s)	12, 81, 308
DraIII	CACNNNGTG	1 cut(s)	317
EciI	GGCGGA	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	211, 252
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	57, 297
Eco47I	GGWCC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	211, 252
EcoT38I	GRGCYC	2 cut(s)	57, 297
ErhI	CCWWGG	2 cut(s)	211, 252
FaeI	CATG	1 cut(s)	317
FaiI	YATR	4 cut(s)	179, 288, 299, 315
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	313
FriOI	GRGCYC	2 cut(s)	57, 297
GlaI	GCGC	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	32, 131, 285
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	3 cut(s)	64, 91, 352
HindII	GTYRAC	3 cut(s)	64, 91, 352
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	145, 329
Hpy166II	GTNNAC	3 cut(s)	64, 91, 352
Hpy188I	TCNGA	1 cut(s)	106
Hpy8I	GTNNAC	3 cut(s)	64, 91, 352
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	4 cut(s)	22, 43, 230, 269
HpyF3I	CTNAG	3 cut(s)	105, 126, 381
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	12, 81, 308
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	7 cut(s)	62, 89, 113, 169, 231, 254, 267
MalI	GATC	3 cut(s)	14, 83, 310
MboI	GATC	3 cut(s)	12, 81, 308
MboII	GAAGA	1 cut(s)	284
MhlI	GDGCHC	2 cut(s)	57, 297
MluCI	AATT	2 cut(s)	244, 302
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	123
NdeII	GATC	3 cut(s)	12, 81, 308
NlaIII	CATG	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	32
Ple19I	CGATCG	1 cut(s)	84
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	84
RgaI	GCGATCGC	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	12, 81, 308
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	57, 297
SetI	ASST	3 cut(s)	57, 69, 210
SfaAI	GCGATCGC	1 cut(s)	84
SgfI	GCGATCGC	1 cut(s)	84
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	2 cut(s)	244, 302
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	2 cut(s)	121, 249
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	2 cut(s)	211, 252
TaqI	TCGA	2 cut(s)	11, 39
TasI	AATT	2 cut(s)	244, 302
TscAI	CASTG	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	25, 336
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	244, 302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.