Rmu_co8382415.1_g000001

UPF0051 protein ABCI8

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8382415.1
Physical Location & Seq
Reverse (-)
2 .. 1174
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8382415.1_g000001.1.cds

Sequence Viewer

Length: 1173 bp
acaactccccagctaagctctcagcaattgaggagtttctccgcaaccgcgactacgacaagaaattcgggttcaacatagacatagattcgatttcgattcccaaggggctgtcgagggagaccatttgtttgatctccaagattaaagaagagccggtttggatgcttgagtttcgtttgaaagcgtacgagaaattcctgaccatgaaagagcccaactggtctgacaaccgatacccacctgtgaattttcaagatatgtgttactattctgcgcccaagaagaagaagagcttgaatagcttggatgaggccgacccggaactgctcaagtactttgataagttgggtgtgcctttgaatgagcagaatcggctggcgaatgttgcggttgatgcggtgctggacagcgtctcgatcgccacgacgcataggaagactctggaggaggctggggtgatcttctgttcgatttcggaggcgattaaggagcacccggatttggttaaggagtatttggggaaggtggtgccgcctggggacaattactatgctgctttgaatgctgcagtttttagtgacggctcgttttgttatattcccaaagatgtgaaatgtcccatgcaaatttcgacttacttcaggatcaatgcgctggagacggggcagtttgagaggactttgattgtggcggaggataggagtttcgtggagtatttggaggggtgcacagctccttcttatgaccggaaccagcttcatgccgccgtggtggagttgtattgtgctgagggtgcggagattaagtactccacggtgcagaattggtatgctggggatgaggaagggaagggagggatatataatttcgttaccaagagagggcgttgcgcaggggcgaggtctaagatatcgtggactcaggtggagacagggtctgccattacttggaagtatccgagtgttgttctggagggggatgattctgtgggggagttttactcggtggctttgactaataactatcagcaggcagacacagggacaaagatgatacacaaggggaagaatactagaagtaggattatttcaaagggtatatcagctgggaattcaaggaactgttatcggggccttgtgcaggttttttcacaggcagagaatgctcgaa

Protein Analysis

390

Amino Acids

43.88

Weight (kDa)

6.23

Isoelectric Point (pI)

30.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 894
Acc36I ACCTGC 1 cut(s) 1134
AccB1I GGYRCC 1 cut(s) 531
AccB7I CCANNNNNTGG 1 cut(s) 950
AccII CGCG 1 cut(s) 50
AciI CCGC 8 cut(s) 42, 48, 391, 400, 535, 694, 767, 799
AclWI GGATC 1 cut(s) 655
AcsI RAATTY 5 cut(s) 64, 196, 249, 629, 1113
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 3 cut(s) 190, 337, 811
AfiI CCNNNNNNNGG 4 cut(s) 504, 884, 950, 1143
AgsI TTSAA 8 cut(s) 75, 183, 256, 300, 363, 564, 1094, 1118
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 7 cut(s) 13, 18, 296, 305, 736, 759, 1108
AluI AGCT 7 cut(s) 13, 18, 296, 305, 736, 759, 1108
Alw21I GWGCWC 2 cut(s) 497, 733
Alw26I GTCTC 4 cut(s) 115, 420, 655, 925
Alw44I GTGCAC 1 cut(s) 729
AlwI GGATC 1 cut(s) 655
AlwNI CAGNNNCTG 1 cut(s) 940
AoxI GGCC 2 cut(s) 314, 1134
ApaLI GTGCAC 1 cut(s) 729
ApeKI GCWGC 2 cut(s) 556, 568
ApoI RAATTY 5 cut(s) 64, 196, 249, 629, 1113
ArsI GACNNNNNNTTYG 4 cut(s) 49, 81, 114, 146
AspLEI GCGC 3 cut(s) 279, 657, 895
AspS9I GGNCC 1 cut(s) 1134
AsuC2I CCSGG 2 cut(s) 322, 499
AsuHPI GGTGA 1 cut(s) 471
BaeGI GKGCMC 1 cut(s) 733
BanI GGYRCC 1 cut(s) 531
BanII GRGCYC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 445
Bbv12I GWGCWC 2 cut(s) 497, 733
BbvCI CCTCAGC 1 cut(s) 791
BbvI GCAGC 2 cut(s) 543, 555
BceAI ACGGC 2 cut(s) 600, 754
BciT130I CCWGG 1 cut(s) 539
BciVI GTATCC 1 cut(s) 968
BcnI CCSGG 2 cut(s) 322, 499
BcoDI GTCTC 4 cut(s) 115, 420, 655, 925
BfaI CTAG 1 cut(s) 1076
BfmI CTRYAG 1 cut(s) 569
BfuAI ACCTGC 1 cut(s) 1134
BfuI GTATCC 1 cut(s) 968
BisI GCNGC 4 cut(s) 535, 557, 569, 767
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 4 cut(s) 536, 558, 570, 768
BmcAI AGTACT 2 cut(s) 337, 811
Bme1390I CCNGG 3 cut(s) 322, 499, 539
BmgT120I GGNCC 1 cut(s) 1134
BmiI GGNNCC 3 cut(s) 533, 754, 1135
BmrFI CCNGG 3 cut(s) 322, 499, 539
BmsI GCATC 2 cut(s) 155, 387
BpiI GAAGAC 1 cut(s) 445
BplI GAGNNNNNCTC 2 cut(s) 988, 1020
BpmI CTGGAG 3 cut(s) 466, 679, 994
Bpu10I CCTNAGC 1 cut(s) 791
Bpu1102I GCTNAGC 1 cut(s) 14
BpuEI CTTGAG 2 cut(s) 190, 316
BpuMI CCSGG 2 cut(s) 322, 499
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 4 cut(s) 104, 538, 770, 815
BsaWI WCCGGW 1 cut(s) 749
BsaXI ACNNNNNCTCC 4 cut(s) 793, 823, 922, 952
Bsc4I CCNNNNNNNGG 4 cut(s) 504, 884, 950, 1143
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 4 cut(s) 104, 538, 770, 815
BseGI GGATG 4 cut(s) 170, 315, 846, 987
BseLI CCNNNNNNNGG 4 cut(s) 504, 884, 950, 1143
BseMII CTCAG 3 cut(s) 35, 782, 937
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 2 cut(s) 46, 463
BseSI GKGCMC 1 cut(s) 733
BseXI GCAGC 2 cut(s) 543, 555
BseYI CCCAGC 4 cut(s) 9, 454, 835, 1108
BsgI GTGCAG 2 cut(s) 841, 1162
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 422
BshFI GGCC 2 cut(s) 316, 1136
BshNI GGYRCC 1 cut(s) 531
BsiEI CGRYCG 1 cut(s) 422
BsiHKAI GWGCWC 2 cut(s) 497, 733
BsiSI CCGG 4 cut(s) 157, 322, 499, 750
BsiWI CGTACG 1 cut(s) 188
BslFI GGGAC 3 cut(s) 556, 605, 1059
BslI CCNNNNNNNGG 4 cut(s) 504, 884, 950, 1143
BsmAI GTCTC 4 cut(s) 115, 420, 655, 925
BsmBI CGTCTC 2 cut(s) 420, 655
BsmFI GGGAC 3 cut(s) 556, 605, 1059
BsmI GAATGC 2 cut(s) 570, 1170
BsnI GGCC 2 cut(s) 316, 1136
Bso31I GGTCTC 1 cut(s) 115
Bsp1286I GDGCHC 3 cut(s) 218, 497, 733
Bsp143I GATC 4 cut(s) 134, 419, 461, 647
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 8 cut(s) 42, 48, 391, 400, 535, 694, 767, 799
BspANI GGCC 2 cut(s) 316, 1136
BspCNI CTCAG 3 cut(s) 34, 783, 936
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 3 cut(s) 533, 754, 1135
BspMAI CTGCAG 1 cut(s) 573
BspMI ACCTGC 1 cut(s) 1134
BspPI GGATC 1 cut(s) 655
BspQI GCTCTTC 2 cut(s) 146, 286
BspT107I GGYRCC 1 cut(s) 531
BspTNI GGTCTC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 156
BsrI ACTGG 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 4 cut(s) 104, 538, 770, 815
BssMI GATC 4 cut(s) 134, 419, 461, 647
BssT1I CCWWGG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 819, 1126
Bst6I CTCTTC 2 cut(s) 146, 286
BstAPI GCANNNNNTGC 1 cut(s) 1165
BstC8I GCNNGC 2 cut(s) 380, 1034
BstDEI CTNAG 5 cut(s) 14, 21, 791, 908, 923
BstDSI CCRYGG 2 cut(s) 770, 815
BstENI CCTNNNNNAGG 1 cut(s) 1141
BstF5I GGATG 4 cut(s) 170, 315, 846, 987
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 3 cut(s) 279, 657, 895
BstKTI GATC 4 cut(s) 137, 422, 464, 650
BstMAI GTCTC 4 cut(s) 115, 420, 655, 925
BstMBI GATC 4 cut(s) 134, 419, 461, 647
BstMCI CGRYCG 1 cut(s) 422
BstMWI GCNNNNNNNGC 7 cut(s) 302, 375, 388, 397, 565, 796, 1165
BstNI CCWGG 1 cut(s) 539
BstSCI CCNGG 3 cut(s) 320, 497, 537
BstSFI CTRYAG 1 cut(s) 569
BstSLI GKGCMC 1 cut(s) 733
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 543, 555
BstV2I GAAGAC 1 cut(s) 445
BsuI GTATCC 1 cut(s) 968
BsuRI GGCC 2 cut(s) 316, 1136
BtgI CCRYGG 2 cut(s) 770, 815
BtsCI GGATG 4 cut(s) 170, 315, 846, 987
BveI ACCTGC 1 cut(s) 1134
Cac8I GCNNGC 2 cut(s) 380, 1034
CaiI CAGNNNCTG 1 cut(s) 940
CfoI GCGC 3 cut(s) 279, 657, 895
Cfr10I RCCGGY 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 1134
CseI GACGC 2 cut(s) 402, 438
Csp6I GTAC 3 cut(s) 189, 336, 810
CviAII CATG 3 cut(s) 207, 624, 763
CviQI GTAC 3 cut(s) 189, 336, 810
DdeI CTNAG 5 cut(s) 14, 21, 791, 908, 923
DpnI GATC 4 cut(s) 136, 421, 463, 649
DpnII GATC 4 cut(s) 134, 419, 461, 647
Eam1104I CTCTTC 2 cut(s) 146, 286
EarI CTCTTC 2 cut(s) 146, 286
EciI GGCGGA 1 cut(s) 709
Eco130I CCWWGG 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 218
Eco31I GGTCTC 1 cut(s) 115
Eco32I GATATC 1 cut(s) 914
Eco57I CTGAAG 1 cut(s) 627
EcoNI CCTNNNNNAGG 1 cut(s) 1141
EcoO109I RGGNCCY 1 cut(s) 1134
EcoRI GAATTC 1 cut(s) 1113
EcoRII CCWGG 1 cut(s) 537
EcoRV GATATC 1 cut(s) 914
EcoT14I CCWWGG 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 104
Esp3I CGTCTC 2 cut(s) 420, 655
FaeI CATG 3 cut(s) 210, 627, 766
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FaqI GGGAC 3 cut(s) 556, 605, 1059
FatI CATG 3 cut(s) 206, 623, 762
Fnu4HI GCNGC 4 cut(s) 535, 557, 569, 767
FokI GGATG 4 cut(s) 177, 322, 853, 994
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 4 cut(s) 535, 557, 569, 767
FspBI CTAG 1 cut(s) 1076
FspI TGCGCA 1 cut(s) 894
GlaI GCGC 3 cut(s) 278, 656, 894
GluI GCNGC 4 cut(s) 535, 557, 569, 767
GsaI CCCAGC 4 cut(s) 13, 458, 839, 1112
GsuI CTGGAG 3 cut(s) 466, 679, 994
HaeIII GGCC 2 cut(s) 316, 1136
HapII CCGG 4 cut(s) 157, 322, 499, 750
HgaI GACGC 2 cut(s) 402, 438
HhaI GCGC 3 cut(s) 279, 657, 895
Hin1II CATG 3 cut(s) 210, 627, 766
Hin6I GCGC 3 cut(s) 277, 655, 893
HinP1I GCGC 3 cut(s) 277, 655, 893
HinfI GANTC 6 cut(s) 88, 99, 372, 441, 921, 985
HpaII CCGG 4 cut(s) 157, 322, 499, 750
HphI GGTGA 1 cut(s) 471
Hpy166II GTNNAC 2 cut(s) 731, 920
Hpy188I TCNGA 3 cut(s) 228, 480, 962
Hpy188III TCNNGA 6 cut(s) 201, 256, 417, 445, 645, 973
Hpy8I GTNNAC 2 cut(s) 731, 920
Hpy99I CGWCG 1 cut(s) 432
HpyAV CCTTC 4 cut(s) 519, 749, 841, 846
HpyCH4III ACNGT 2 cut(s) 819, 1126
HpyCH4V TGCA 5 cut(s) 571, 627, 731, 822, 1143
HpyF10VI GCNNNNNNNGC 7 cut(s) 302, 375, 388, 397, 565, 796, 1165
HpyF3I CTNAG 5 cut(s) 14, 21, 791, 908, 923
Hsp92II CATG 3 cut(s) 210, 627, 766
HspAI GCGC 3 cut(s) 277, 655, 893
Kzo9I GATC 4 cut(s) 134, 419, 461, 647
LguI GCTCTTC 2 cut(s) 146, 286
LmnI GCTCC 2 cut(s) 492, 741
Lsp1109I GCAGC 2 cut(s) 543, 555
LweI GCATC 2 cut(s) 155, 387
MaeI CTAG 1 cut(s) 1076
MaeIII GTNAC 3 cut(s) 265, 580, 873
MalI GATC 4 cut(s) 136, 421, 463, 649
MboI GATC 4 cut(s) 134, 419, 461, 647
MboII GAAGA 7 cut(s) 163, 297, 300, 303, 450, 456, 1080
MfeI CAATTG 1 cut(s) 26
MhlI GDGCHC 3 cut(s) 218, 497, 733
MluCI AATT 9 cut(s) 26, 64, 196, 249, 546, 629, 825, 867, 1113
MlyI GAGTC 2 cut(s) 435, 915
MseI TTAA 4 cut(s) 146, 488, 509, 806
MspA1I CMGCKG 1 cut(s) 1108
MspI CCGG 4 cut(s) 157, 322, 499, 750
MspR9I CCNGG 3 cut(s) 322, 499, 539
MunI CAATTG 1 cut(s) 26
Mva1269I GAATGC 2 cut(s) 570, 1170
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 7 cut(s) 302, 375, 388, 397, 565, 796, 1165
NciI CCSGG 2 cut(s) 322, 499
NdeII GATC 4 cut(s) 134, 419, 461, 647
NlaIII CATG 3 cut(s) 210, 627, 766
NlaIV GGNNCC 3 cut(s) 533, 754, 1135
NmuCI GTSAC 1 cut(s) 580
NsbI TGCGCA 1 cut(s) 894
PciSI GCTCTTC 2 cut(s) 146, 286
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PctI GAATGC 2 cut(s) 570, 1170
PfeI GAWTC 4 cut(s) 88, 99, 372, 985
Pfl23II CGTACG 1 cut(s) 188
PflFI GACNNNGTC 2 cut(s) 412, 936
PflMI CCANNNNNTGG 1 cut(s) 950
PkrI GCNGC 4 cut(s) 536, 558, 570, 768
Ple19I CGATCG 1 cut(s) 422
PleI GAGTC 2 cut(s) 435, 915
PpsI GAGTC 2 cut(s) 435, 915
Psp6I CCWGG 1 cut(s) 537
PspFI CCCAGC 4 cut(s) 9, 454, 835, 1108
PspGI CCWGG 1 cut(s) 537
PspLI CGTACG 1 cut(s) 188
PspN4I GGNNCC 3 cut(s) 533, 754, 1135
PspPI GGNCC 1 cut(s) 1134
PstI CTGCAG 1 cut(s) 573
PstNI CAGNNNCTG 1 cut(s) 940
PsyI GACNNNGTC 2 cut(s) 412, 936
PvuI CGATCG 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 1108
RsaI GTAC 3 cut(s) 190, 337, 811
RsaNI GTAC 3 cut(s) 189, 336, 810
SapI GCTCTTC 2 cut(s) 146, 286
SaqAI TTAA 4 cut(s) 146, 488, 509, 806
SatI GCNGC 4 cut(s) 535, 557, 569, 767
Sau3AI GATC 4 cut(s) 134, 419, 461, 647
Sau96I GGNCC 1 cut(s) 1134
ScaI AGTACT 2 cut(s) 337, 811
SchI GAGTC 2 cut(s) 435, 915
ScrFI CCNGG 3 cut(s) 322, 499, 539
SduI GDGCHC 3 cut(s) 218, 497, 733
SfaNI GCATC 2 cut(s) 155, 387
SfcI CTRYAG 1 cut(s) 569
SmlI CTYRAG 2 cut(s) 169, 331
SmoI CTYRAG 2 cut(s) 169, 331
Sse9I AATT 9 cut(s) 26, 64, 196, 249, 546, 629, 825, 867, 1113
SsiI CCGC 8 cut(s) 42, 48, 391, 400, 535, 694, 767, 799
SspMI CTAG 1 cut(s) 1076
StyD4I CCNGG 3 cut(s) 320, 497, 537
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 2 cut(s) 819, 1126
TaqI TCGA 7 cut(s) 91, 97, 115, 418, 472, 634, 1170
TasI AATT 9 cut(s) 26, 64, 196, 249, 546, 629, 825, 867, 1113
TatI WGTACW 2 cut(s) 335, 809
TauI GCSGC 2 cut(s) 537, 769
TfiI GAWTC 4 cut(s) 88, 99, 372, 985
Tru1I TTAA 4 cut(s) 146, 488, 509, 806
Tru9I TTAA 4 cut(s) 146, 488, 509, 806
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 2 cut(s) 556, 568
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 2 cut(s) 223, 751
Tth111I GACNNNGTC 2 cut(s) 412, 936
Van91I CCANNNNNTGG 1 cut(s) 950
VneI GTGCAC 1 cut(s) 729
XagI CCTNNNNNAGG 1 cut(s) 1141
XapI RAATTY 5 cut(s) 64, 196, 249, 629, 1113
XspI CTAG 1 cut(s) 1076
ZrmI AGTACT 2 cut(s) 337, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.