Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003549.1

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

28824 .. 30185

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003549.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgcagtatatggaagttgatgaatacccatttcaggttgtacgtatgcttgaagctgatgaatacccatttcatgaggtcaagaatcccacagctcggattgaacacgaagctagtacctccaaaattggtgaagaccagctattttactttcagcaaaggggaatagactatgagaaagccatggctgccatgatatctagtttttgccttgcagtattgtatgagcttcctgatgagtttgggtctgaggtgaatcaaatgattggcttgaagcttgaaggaacagtggggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0030003 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048583 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

98

Amino Acids

11.3

Weight (kDa)

4.35

Isoelectric Point (pI)

25.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	42, 118
AfiI	CCNNNNNNNGG	2 cut(s)	34, 96
AgsI	TTSAA	4 cut(s)	53, 104, 274, 281
AluBI	AGCT	6 cut(s)	56, 95, 113, 142, 229, 277
AluI	AGCT	6 cut(s)	56, 95, 113, 142, 229, 277
ApeKI	GCWGC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	143, 265
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	114, 201
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 96
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	34, 96
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	34, 96
Bsp19I	CCATGG	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstSNI	TACGTA	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	294
CciI	TCATGA	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	41, 117
CviAII	CATG	3 cut(s)	74, 184, 193
CviJI	RGCY	9 cut(s)	56, 95, 113, 142, 182, 188, 229, 270, 277
CviKI_1	RGCY	9 cut(s)	56, 95, 113, 142, 182, 188, 229, 270, 277
CviQI	GTAC	2 cut(s)	41, 117
DdeI	CTNAG	1 cut(s)	249
Eco105I	TACGTA	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	77, 187, 196
FaiI	YATR	8 cut(s)	9, 11, 47, 75, 174, 185, 194, 225
FatI	CATG	3 cut(s)	73, 183, 192
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	114, 201
GluI	GCNGC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	77, 187, 196
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	2 cut(s)	85, 256
HphI	GGTGA	2 cut(s)	143, 265
Hpy188I	TCNGA	2 cut(s)	99, 250
Hpy188III	TCNNGA	3 cut(s)	74, 82, 233
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	4, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	3 cut(s)	77, 187, 196
LpnPI	CCDG	3 cut(s)	20, 152, 246
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	114, 201
MaeII	ACGT	1 cut(s)	43
MboII	GAAGA	1 cut(s)	146
MluCI	AATT	1 cut(s)	126
MnlI	CCTC	3 cut(s)	70, 130, 244
MwoI	GCNNNNNNNGC	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	183
NlaIII	CATG	3 cut(s)	77, 187, 196
PagI	TCATGA	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	85, 256
PkrI	GCNGC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	44
RsaI	GTAC	2 cut(s)	42, 118
RsaNI	GTAC	2 cut(s)	41, 117
SatI	GCNGC	1 cut(s)	189
SnaBI	TACGTA	1 cut(s)	44
Sse9I	AATT	1 cut(s)	126
SspMI	CTAG	2 cut(s)	114, 201
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	46
TasI	AATT	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	85, 256
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	36, 62, 75
TspRI	CASTG	1 cut(s)	294
XspI	CTAG	2 cut(s)	114, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.