Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

16288731 .. 16293714

Gene Structure 4984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGGTCAAAGATTTGGGATTTGAGAAGGTCCAAGGACCAGTTGGGACTGTCACCGAAGGAGAGAATTCCTGCAAGGAAAATGGGAAACTGGAAGAAGGGTCAAGCCATAATGAGCCCATAAAATTTGGATCACATGGTGATGAAATGGCTAAAAAGGAAGGGAATGGGGTTGCGGTACAAAACTTCCTCAAGATGCACTTGATGAAGAAAAGATGGATTGAAACAATATCACTGCATGCAAGTGTGCCATTAGTTCTTCAAGCACCATACAACCCTTTTGTATTAGTTCTGCCAGAACAGAGGATGAACTTGGACAAACTTGATGATGTTGACTCTCGTGTGCACTTCACATTCACAGACTGCCTCTTTCTTGTATATAGAGTTTCTAATATGAAACTTGTGAGAATTCTCCCTAGTGCAGAAGATGAGGTCAACGTAGCTTGTTTTCATCCTTCTATCGGAGGTGGCGTTGTTTATGGAACTAAGAGTCCGGGAGCTCCCGATGAAACTTCAAGCTCCTTAGAATCCAATGAGGCCATGAGAGCAGTAACGCTTGCAAAGTTAGACGCTGAAATCACAGATGATATGAAAACTGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.02

Weight (kDa)

5.26

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	3 cut(s)	67, 125, 408
AdeI	CACNNNGTG	1 cut(s)	140
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	3 cut(s)	224, 263, 516
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	3 cut(s)	443, 500, 519
AluI	AGCT	3 cut(s)	443, 500, 519
Alw21I	GWGCWC	2 cut(s)	348, 502
Alw44I	GTGCAC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	1 cut(s)	537
ApaLI	GTGCAC	1 cut(s)	344
ApoI	RAATTY	3 cut(s)	67, 125, 408
AspS9I	GGNCC	2 cut(s)	31, 38
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	46, 152
AvaII	GGWCC	2 cut(s)	31, 38
BaeGI	GKGCMC	1 cut(s)	348
BanII	GRGCYC	2 cut(s)	120, 502
BauI	CACGAG	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	348, 502
BccI	CCATC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	495
BfaI	CTAG	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	2 cut(s)	31, 38
BmgT120I	GGNCC	2 cut(s)	31, 38
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	495
BsaJI	CCNNGG	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	41, 96
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	2 cut(s)	312, 451
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseNI	ACTGG	2 cut(s)	41, 96
BseSI	GKGCMC	1 cut(s)	348
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	539
BsiHKAI	GWGCWC	2 cut(s)	348, 502
BsiSI	CCGG	1 cut(s)	494
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	539
Bsp1286I	GDGCHC	3 cut(s)	120, 348, 502
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	1 cut(s)	539
BspPI	GGATC	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	41, 96
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	131
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	52, 598
BstC8I	GCNNGC	2 cut(s)	240, 558
BstDEI	CTNAG	2 cut(s)	486, 523
BstF5I	GGATG	2 cut(s)	312, 451
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	493
BstSLI	GKGCMC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	539
BtsCI	GGATG	2 cut(s)	312, 451
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	240, 558
Cfr13I	GGNCC	2 cut(s)	31, 38
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	3 cut(s)	137, 239, 541
CviJI	RGCY	7 cut(s)	108, 118, 152, 443, 500, 519, 539
CviKI_1	RGCY	7 cut(s)	108, 118, 152, 443, 500, 519, 539
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	2 cut(s)	486, 523
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
DraIII	CACNNNGTG	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	34
Eco24I	GRGCYC	2 cut(s)	120, 502
Eco47I	GGWCC	2 cut(s)	31, 38
Eco53kI	GAGCTC	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	500
EcoRI	GAATTC	2 cut(s)	67, 408
EcoT14I	CCWWGG	1 cut(s)	34
EcoT38I	GRGCYC	2 cut(s)	120, 502
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	3 cut(s)	140, 242, 544
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	3 cut(s)	136, 238, 540
FokI	GGATG	2 cut(s)	319, 438
FriOI	GRGCYC	2 cut(s)	120, 502
FspBI	CTAG	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	1 cut(s)	494
HgaI	GACGC	1 cut(s)	578
Hin1II	CATG	3 cut(s)	140, 242, 544
HincII	GTYRAC	2 cut(s)	334, 436
HindII	GTYRAC	2 cut(s)	334, 436
HinfI	GANTC	3 cut(s)	335, 490, 527
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	2 cut(s)	46, 152
Hpy166II	GTNNAC	3 cut(s)	334, 346, 436
Hpy188I	TCNGA	1 cut(s)	464
Hpy188III	TCNNGA	2 cut(s)	193, 503
Hpy8I	GTNNAC	3 cut(s)	334, 346, 436
HpyAV	CCTTC	5 cut(s)	22, 53, 92, 155, 465
HpyCH4III	ACNGT	2 cut(s)	52, 598
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	7 cut(s)	75, 199, 238, 242, 346, 422, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	2 cut(s)	486, 523
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	140, 242, 544
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	3 cut(s)	497, 505, 524
LpnPI	CCDG	5 cut(s)	54, 77, 85, 309, 507
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	52, 550
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	4 cut(s)	107, 220, 251, 437
MhlI	GDGCHC	3 cut(s)	120, 348, 502
MluCI	AATT	3 cut(s)	67, 125, 408
MlyI	GAGTC	2 cut(s)	329, 499
MnlI	CCTC	6 cut(s)	200, 297, 377, 424, 458, 529
MslI	CAYNNNNRTG	2 cut(s)	141, 243
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	545
NciI	CCSGG	1 cut(s)	495
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	3 cut(s)	140, 242, 544
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	527
PfoI	TCCNGGA	1 cut(s)	493
PleI	GAGTC	2 cut(s)	329, 498
PpsI	GAGTC	2 cut(s)	329, 498
Psp124BI	GAGCTC	1 cut(s)	502
PspPI	GGNCC	2 cut(s)	31, 38
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
RseI	CAYNNNNRTG	2 cut(s)	141, 243
SacI	GAGCTC	1 cut(s)	502
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	2 cut(s)	31, 38
SchI	GAGTC	2 cut(s)	329, 499
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	3 cut(s)	120, 348, 502
SetI	ASST	7 cut(s)	33, 435, 441, 445, 469, 502, 521
SfaNI	GCATC	1 cut(s)	186
SinI	GGWCC	2 cut(s)	31, 38
SmiMI	CAYNNNNRTG	2 cut(s)	141, 243
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	3 cut(s)	67, 125, 408
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	417
SstI	GAGCTC	1 cut(s)	502
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	2 cut(s)	52, 598
TaiI	ACGT	1 cut(s)	441
TasI	AATT	3 cut(s)	67, 125, 408
TfiI	GAWTC	1 cut(s)	527
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	7 cut(s)	159, 221, 323, 410, 440, 522, 605
TspRI	CASTG	1 cut(s)	240
VneI	GTGCAC	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	31, 38
XapI	RAATTY	3 cut(s)	67, 125, 408
XceI	RCATGY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.