Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

2169010 .. 2173668

Gene Structure 4659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28479

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAATGTATTAATAGGGAGCTTCCTCTTTCAAAGAGACATGCAAAGGGACTTGGTTATCATCCTCGCACAATGGGTGTTGATACTAATGACTCTCATGCAAAACCTTCTACTCATTCTGCTGTCACGTCCTGTAACTGTTGTGGTATCACCCACTGGCGTCGACATTGCCCAAACCGTGATCAACGTGCTCCAGTATTGGGATCAGAAACAAAATCAAAATCTGCTGCTGGCAGCGACAACAGTTCATGTCAAGAATCCCACAGCTCGCATTGAACACGAAGCCAGTACCTCCAAAATTGGTGAGGACCAGCTATTTTACTTTCAGCAAAGGGGAATAGACTATGAGAAAGCCATGGCTGCCATGATATCTGGTTTTTGCCAGGCAGTATTCAATGAGCTTCCTGATGAGTTTGGGTCTGAGGTGAATCAACTGATTGGCTTGAAGCTGGAAGGAACAGTGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0030003 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048583 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

155

Amino Acids

17.4

Weight (kDa)

4.87

Isoelectric Point (pI)

22.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUFBD_core	PF01458	83 - 126	2e-11	SUF system FeS cluster assembly, SufBD core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	162
AclWI	GGATC	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	32, 275, 394, 445
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	5 cut(s)	21, 266, 313, 400, 448
AluI	AGCT	5 cut(s)	21, 266, 313, 400, 448
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	210
ApeKI	GCWGC	3 cut(s)	226, 233, 359
AseI	ATTAAT	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	3 cut(s)	141, 314, 436
AvaII	GGWCC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	213, 245, 346
BciT130I	CCWGG	1 cut(s)	383
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	30
BisI	GCNGC	3 cut(s)	227, 234, 360
BlsI	GCNGC	3 cut(s)	228, 235, 361
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	307
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	3 cut(s)	160, 193, 285
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	3 cut(s)	160, 193, 285
BseXI	GCAGC	3 cut(s)	213, 245, 346
BsiHKAI	GWGCWC	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	180, 202
Bsp19I	CCATGG	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	412
BspPI	GGATC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	3 cut(s)	160, 193, 285
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	2 cut(s)	180, 202
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	4 cut(s)	139, 178, 244, 460
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	231, 268
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	183, 205
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	2 cut(s)	180, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	213, 245, 346
BtgI	CCRYGG	1 cut(s)	354
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	153, 465
Cac8I	GCNNGC	2 cut(s)	231, 268
Cfr13I	GGNCC	1 cut(s)	307
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	5 cut(s)	40, 97, 248, 355, 364
CviJI	RGCY	9 cut(s)	21, 266, 284, 313, 353, 359, 400, 441, 448
CviKI_1	RGCY	9 cut(s)	21, 266, 284, 313, 353, 359, 400, 441, 448
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	2 cut(s)	182, 204
DpnII	GATC	2 cut(s)	180, 202
Eco130I	CCWWGG	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	5 cut(s)	43, 100, 251, 358, 367
FaiI	YATR	6 cut(s)	41, 98, 249, 345, 356, 365
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	5 cut(s)	39, 96, 247, 354, 363
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	227, 234, 360
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	3 cut(s)	227, 234, 360
GluI	GCNGC	3 cut(s)	227, 234, 360
GsuI	CTGGAG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	5 cut(s)	43, 100, 251, 358, 367
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	91, 256, 427
HphI	GGTGA	3 cut(s)	141, 314, 436
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	207, 421
Hpy188III	TCNNGA	2 cut(s)	253, 404
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	116, 446
HpyCH4III	ACNGT	4 cut(s)	139, 178, 244, 460
HpyCH4IV	ACGT	2 cut(s)	127, 186
HpyCH4V	TGCA	2 cut(s)	43, 100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	2 cut(s)	127, 186
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	5 cut(s)	43, 100, 251, 358, 367
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	180, 202
LmnI	GCTCC	2 cut(s)	18, 195
Lsp1109I	GCAGC	3 cut(s)	213, 245, 346
MaeII	ACGT	2 cut(s)	127, 186
MaeIII	GTNAC	2 cut(s)	123, 133
MalI	GATC	2 cut(s)	182, 204
MboI	GATC	2 cut(s)	180, 202
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	5 cut(s)	35, 74, 298, 301, 415
MseI	TTAA	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	2 cut(s)	180, 202
NlaIII	CATG	5 cut(s)	43, 100, 251, 358, 367
NmuCI	GTSAC	1 cut(s)	123
NspI	RCATGY	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	256, 427
PkrI	GCNGC	3 cut(s)	228, 235, 361
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	307
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	3 cut(s)	227, 234, 360
Sau3AI	GATC	2 cut(s)	180, 202
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	192
SinI	GGWCC	1 cut(s)	307
Sse9I	AATT	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	4 cut(s)	139, 178, 244, 460
TaiI	ACGT	2 cut(s)	130, 189
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	297
TfiI	GAWTC	2 cut(s)	256, 427
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	2 cut(s)	160, 465
TseFI	GTSAC	1 cut(s)	123
TseI	GCWGC	3 cut(s)	226, 233, 359
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	2 cut(s)	17, 236
TspRI	CASTG	2 cut(s)	160, 465
VpaK11BI	GGWCC	1 cut(s)	307
VspI	ATTAAT	1 cut(s)	11
XceI	RCATGY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.