Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

28322544 .. 28329031

Gene Structure 6488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCGTGGGTTGGTCCGTGCACGGCGCAGCAAGGCTGGAAGTTTGGCGGCGCCGCTGCAAATCACCTTGATCGAACTTCCAATTCGGGCCACCATAGCAGTTCAAACTCATCCTCCCACTCTACCAAGCTCATAGATGACGAAGAATACCCAAATTCACAAGCAAAACGAGGCTCCATTCTCTACCGATTTGGCGTCAAGAATCCCACAGCTCACATTGAACACGAAGCCGGTACCTCCAAAATTGGTCAAGACCAGCTTTACTTTCGGCATAGGGGAATAGACTATGAGAAAGCCATGGCTGCCATGATATCTAGTTTTTGCCCGGCAGTATTGAATGAGCTTCCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0030003 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048583 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

117

Amino Acids

12.82

Weight (kDa)

6.64

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	233
AccB1I	GGYRCC	2 cut(s)	50, 233
AciI	CCGC	2 cut(s)	48, 54
AcsI	RAATTY	1 cut(s)	154
AcyI	GRCGYC	2 cut(s)	51, 195
AfaI	GTAC	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	105, 221, 337
AluBI	AGCT	4 cut(s)	130, 212, 259, 343
AluI	AGCT	4 cut(s)	130, 212, 259, 343
Alw21I	GWGCWC	1 cut(s)	23
Alw44I	GTGCAC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	88
ApaLI	GTGCAC	1 cut(s)	19
ApeKI	GCWGC	3 cut(s)	28, 56, 302
ApoI	RAATTY	1 cut(s)	154
Asp718I	GGTACC	1 cut(s)	233
AspLEI	GCGC	2 cut(s)	28, 53
AspS9I	GGNCC	2 cut(s)	14, 88
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	23
BanI	GGYRCC	2 cut(s)	50, 233
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	40, 43, 289
BceAI	ACGGC	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	326
BfaI	CTAG	2 cut(s)	315, 352
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	5 cut(s)	29, 49, 54, 57, 303
BlsI	GCNGC	5 cut(s)	30, 50, 55, 58, 304
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	2 cut(s)	14, 88
BmiI	GGNNCC	3 cut(s)	52, 175, 235
BmrFI	CCNGG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	326
BsaHI	GRCGYC	2 cut(s)	51, 195
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse118I	RCCGGY	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	40, 43, 289
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	2 cut(s)	50, 233
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	231, 326
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	70
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	2 cut(s)	48, 54
BspANI	GGCC	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	52, 175, 235
BspT107I	GGYRCC	2 cut(s)	50, 233
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	2 cut(s)	51, 195
BssT1I	CCWWGG	1 cut(s)	297
BstACI	GRCGYC	2 cut(s)	51, 195
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	28, 53
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 302
BstSCI	CCNGG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	40, 43, 289
BsuRI	GGCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	110
CfoI	GCGC	2 cut(s)	28, 53
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	14, 88
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	2 cut(s)	298, 307
CviQI	GTAC	1 cut(s)	234
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	297
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	301, 310
FaiI	YATR	6 cut(s)	96, 134, 273, 288, 299, 308
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	2 cut(s)	297, 306
Fnu4HI	GCNGC	5 cut(s)	29, 49, 54, 57, 303
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	5 cut(s)	29, 49, 54, 57, 303
FspBI	CTAG	2 cut(s)	315, 352
GlaI	GCGC	2 cut(s)	27, 52
GluI	GCNGC	5 cut(s)	29, 49, 54, 57, 303
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	2 cut(s)	231, 326
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	2 cut(s)	28, 53
Hin1I	GRCGYC	2 cut(s)	51, 195
Hin1II	CATG	2 cut(s)	301, 310
Hin6I	GCGC	2 cut(s)	26, 51
HinP1I	GCGC	2 cut(s)	26, 51
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	231, 326
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	199, 251, 347
Hpy8I	GTNNAC	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	21, 59
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 302
Hsp92I	GRCGYC	2 cut(s)	51, 195
Hsp92II	CATG	2 cut(s)	301, 310
HspAI	GCGC	2 cut(s)	26, 51
KasI	GGCGCC	1 cut(s)	50
KpnI	GGTACC	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	4 cut(s)	22, 244, 269, 339
Lsp1109I	GCAGC	3 cut(s)	40, 43, 289
MaeI	CTAG	2 cut(s)	315, 352
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	3 cut(s)	82, 154, 243
Mly113I	GGCGCC	1 cut(s)	51
MnlI	CCTC	3 cut(s)	124, 164, 247
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	231, 326
MspR9I	CCNGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	96, 302
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	301, 310
NlaIV	GGNNCC	3 cut(s)	52, 175, 235
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	5 cut(s)	30, 50, 55, 58, 304
PluTI	GGCGCC	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	52, 175, 235
PspPI	GGNCC	2 cut(s)	14, 88
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SatI	GCNGC	5 cut(s)	29, 49, 54, 57, 303
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	2 cut(s)	14, 88
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	6 cut(s)	69, 132, 214, 239, 261, 345
SfoI	GGCGCC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	14
Sse9I	AATT	3 cut(s)	82, 154, 243
SsiI	CCGC	2 cut(s)	48, 54
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	2 cut(s)	315, 352
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	297
TaqI	TCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	82, 154, 243
TauI	GCSGC	2 cut(s)	51, 56
TfiI	GAWTC	1 cut(s)	202
TseI	GCWGC	3 cut(s)	28, 56, 302
TspGWI	ACGGA	1 cut(s)	6
VneI	GTGCAC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	154
XspI	CTAG	2 cut(s)	315, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.