Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

2151016 .. 2154103

Gene Structure 3088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG029700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGGCTTCTCTCTTATCCAACGGTATTTCCATCTTCTCTCCCCAACCCACTTCCGACCCTCCCAAGTTCCCAAACCCCTTCCACCCCAACTTCCTCAAGCTCCAAACCCACTTCCGACCCTCCTCCTCCTCCTCCCGCGTCGTCAAGGTCCGCGCCGACGTCAGCTACGACCCCACCACCACCTCCCCCGACCCGACCAACTCCCCAGCTAAGCTCTCACCAATTGAGGAGTTTCTCCGCAACCGCGATTACGACAAGAAATTCGGGTTCAACATAGACATAGATTCGATTTCGATTCCCAAGGGGCTGTCGAGAGAGACCATCTGTTTGATCTCCAAGATTAAGGAAGAGCCGGTTTGGATGCTTGAGTTTCGTTTGAAAGCTTACGAGAAATTCCTGACCATGAAAGAGCCCAACTGGTCTGACAATCGATACCCACCTGTGAATTTTCAAGATATGTGTTACTATTCTGCGCCCAAGAAGAAGAAGAGCTTGAATAGCTTGGATGAGGCCGACCCGGAATTGCTCAAGTACTTTGATAAGTTGGGTGTGCCTTTGAACGAGCAGAATCGGCTGGCGAATGTTGCAGTTGATGCAGTGTTGGACAGTGTTTCGATCGCCACGACGCATAGGAAGACTCTGGAGGAGGCTGGGGTGATCTTCTGTTCGATTTCGGAGGCGATTAGGGAGCACCCGGATTTGGTTAAGGAGTATTTGGGGAAGGTGGTGCCGCCTGGGGATAATTACTATGCTGCTTTGAATGCTGCAGTTTTTAGTGACGGCTCGTTTTGTTATATTCCGAAAGATGTGAAATGTCCTATGCAAATTTCGACTTACTTCAGGATCAATGCGCTGGAGACGGGGCAGTTTGAGAGGACTTTGATTGTGGCGGAGGATAGGAGTTTCGTGGAGTATTTGGAGGGGTGTACAGCTCCTTCTTATGACCGGAACCAGCTTCATGCCGCGGTGGTGGAGTTGTATTGTGCTGAGGGTGCGGAGATTAAGTACTCCACGGTGCAGAATTGGTATGCTGGGGATGAGGAAGGGAAGGGAGGGATATATAATTTCGTTACCAAGAGAGGGCGTTGCGCAGGGGCCAGGTCTAAGATATCTTGGACTCAGGTGGAGACAGGGTCTGCCATTACTTGGAAGTATCCGAGTGTTGTTCTGGAGGGGGATGATTCTGTGGGAGAGTTTTACTCAGTGGCTTTGACTAATAACTATCAGCAGGCAGACACCGGGACAAAGATGATACACAAGGGGAAGAATACTAGAAGTAGGATTATTTCAAAGGGTATATCAGCTGGGAATTCAAGGAACTGTTATCGGGGCCTTGTGCAGGTTTTTTCACAGGCAGAGAATGCTCGAAATTCCTCACAGTGTGATTCAATGCTTATTGGAGATAATGCAGCTGCCAACACCTACCCATACATTGAGGTCAAGAATCCCACAGCTCGCATTGAACACGAAGCCAGTACCTCCAAAATTGGTGAGGACCAGCTATTTTACTTTCAGCAAAGGGGAATAGACTATGAGAAAGCCATGGCTGCCATGATATCTGGTTTTTGCCAGGCAGTATTCAATGAGCTTCCTGATGAGTTTGGGTCTGAGGTGAATCAACTGATTGGCTTGAAGCTTGAAGGAACAGTGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0030003 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048583 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

551

Amino Acids

61.56

Weight (kDa)

5.63

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufBD_N	PF19295	201 - 274	4.5e-11	SufBD protein N-terminal region
SUFBD_core	PF01458	280 - 522	6.6e-76	SUF system FeS cluster assembly, SufBD core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
Acc16I	TGCGCA	1 cut(s)	1090
Acc36I	ACCTGC	1 cut(s)	1330
AccB1I	GGYRCC	1 cut(s)	727
AccB7I	CCANNNNNTGG	1 cut(s)	1146
AccII	CGCG	4 cut(s)	138, 153, 246, 965
AciI	CCGC	9 cut(s)	136, 151, 238, 244, 731, 890, 963, 965, 995
AclWI	GGATC	1 cut(s)	851
AcsI	RAATTY	6 cut(s)	260, 392, 445, 825, 1309, 1369
AcuI	CTGAAG	1 cut(s)	823
AcyI	GRCGYC	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	1382
AfaI	GTAC	4 cut(s)	533, 928, 1007, 1477
AfiI	CCNNNNNNNGG	4 cut(s)	700, 1080, 1146, 1339
AjnI	CCWGG	3 cut(s)	733, 1097, 1569
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	3 cut(s)	311, 851, 1121
AlwI	GGATC	1 cut(s)	851
AlwNI	CAGNNNCTG	1 cut(s)	1136
AoxI	GGCC	3 cut(s)	510, 1095, 1330
ApeKI	GCWGC	5 cut(s)	752, 764, 1409, 1412, 1547
ApoI	RAATTY	6 cut(s)	260, 392, 445, 825, 1309, 1369
ArsI	GACNNNNNNTTYG	4 cut(s)	245, 277, 310, 342
AspLEI	GCGC	4 cut(s)	155, 475, 853, 1091
AspS9I	GGNCC	4 cut(s)	148, 1095, 1330, 1495
AsuC2I	CCSGG	3 cut(s)	518, 695, 1240
AsuHPI	GGTGA	4 cut(s)	210, 667, 1502, 1624
AvaII	GGWCC	2 cut(s)	148, 1495
BanI	GGYRCC	1 cut(s)	727
BanII	GRGCYC	1 cut(s)	414
BarI	GAAGNNNNNNTAC	2 cut(s)	919, 951
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	693
BbvCI	CCTCAGC	1 cut(s)	987
BbvI	GCAGC	5 cut(s)	739, 751, 1399, 1421, 1534
BccI	CCATC	2 cut(s)	38, 329
BceAI	ACGGC	1 cut(s)	796
BciT130I	CCWGG	3 cut(s)	735, 1099, 1571
BciVI	GTATCC	1 cut(s)	1164
BcnI	CCSGG	3 cut(s)	518, 695, 1240
BcoDI	GTCTC	3 cut(s)	311, 851, 1121
BfaI	CTAG	1 cut(s)	1272
BfmI	CTRYAG	1 cut(s)	765
BfuAI	ACCTGC	1 cut(s)	1330
BfuI	GTATCC	1 cut(s)	1164
BisI	GCNGC	7 cut(s)	731, 753, 765, 963, 1410, 1413, 1548
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	7 cut(s)	732, 754, 766, 964, 1411, 1414, 1549
BmcAI	AGTACT	2 cut(s)	533, 1007
Bme1390I	CCNGG	6 cut(s)	518, 695, 735, 1099, 1240, 1571
Bme18I	GGWCC	2 cut(s)	148, 1495
BmgT120I	GGNCC	4 cut(s)	148, 1095, 1330, 1495
BmiI	GGNNCC	4 cut(s)	729, 950, 1096, 1331
BmrFI	CCNGG	6 cut(s)	518, 695, 735, 1099, 1240, 1571
BmsI	GCATC	2 cut(s)	351, 583
BpiI	GAAGAC	1 cut(s)	641
BplI	GAGNNNNNCTC	2 cut(s)	1184, 1216
BpmI	CTGGAG	3 cut(s)	662, 875, 1190
Bpu10I	CCTNAGC	1 cut(s)	987
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	3 cut(s)	80, 386, 512
BpuMI	CCSGG	3 cut(s)	518, 695, 1240
Bsa29I	ATCGAT	1 cut(s)	430
BsaHI	GRCGYC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	5 cut(s)	300, 734, 963, 1011, 1542
BsaWI	WCCGGW	1 cut(s)	945
BsaXI	ACNNNNNCTCC	4 cut(s)	989, 1019, 1118, 1148
Bsc4I	CCNNNNNNNGG	4 cut(s)	700, 1080, 1146, 1339
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	2 cut(s)	422, 1473
BseBI	CCWGG	3 cut(s)	735, 1099, 1571
BseCI	ATCGAT	1 cut(s)	430
BseDI	CCNNGG	5 cut(s)	300, 734, 963, 1011, 1542
BseGI	GGATG	4 cut(s)	366, 511, 1042, 1183
BseLI	CCNNNNNNNGG	4 cut(s)	700, 1080, 1146, 1339
BseMII	CTCAG	4 cut(s)	978, 1133, 1215, 1599
BseNI	ACTGG	2 cut(s)	422, 1473
BseRI	GAGGAG	6 cut(s)	112, 115, 118, 121, 242, 659
BseXI	GCAGC	5 cut(s)	739, 751, 1399, 1421, 1534
BseYI	CCCAGC	4 cut(s)	205, 650, 1031, 1304
BsgI	GTGCAG	2 cut(s)	1037, 1358
Bsh1236I	CGCG	4 cut(s)	138, 153, 246, 965
Bsh1285I	CGRYCG	1 cut(s)	618
BshFI	GGCC	3 cut(s)	512, 1097, 1332
BshNI	GGYRCC	1 cut(s)	727
BshVI	ATCGAT	1 cut(s)	430
BsiEI	CGRYCG	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	693
BsiSI	CCGG	5 cut(s)	353, 518, 695, 946, 1239
BslFI	GGGAC	1 cut(s)	1255
BslI	CCNNNNNNNGG	4 cut(s)	700, 1080, 1146, 1339
BsmAI	GTCTC	3 cut(s)	311, 851, 1121
BsmBI	CGTCTC	1 cut(s)	851
BsmFI	GGGAC	1 cut(s)	1255
BsmI	GAATGC	2 cut(s)	766, 1366
BsnI	GGCC	3 cut(s)	512, 1097, 1332
Bso31I	GGTCTC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	414, 693
Bsp1407I	TGTACA	1 cut(s)	926
Bsp143I	GATC	4 cut(s)	330, 615, 657, 843
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	1542
BspACI	CCGC	9 cut(s)	136, 151, 238, 244, 731, 890, 963, 965, 995
BspANI	GGCC	3 cut(s)	512, 1097, 1332
BspCNI	CTCAG	4 cut(s)	979, 1132, 1214, 1600
BspDI	ATCGAT	1 cut(s)	430
BspFNI	CGCG	4 cut(s)	138, 153, 246, 965
BspLI	GGNNCC	4 cut(s)	729, 950, 1096, 1331
BspMAI	CTGCAG	1 cut(s)	769
BspMI	ACCTGC	1 cut(s)	1330
BspPI	GGATC	1 cut(s)	851
BspQI	GCTCTTC	2 cut(s)	342, 482
BspT107I	GGYRCC	1 cut(s)	727
BspTNI	GGTCTC	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	352
BsrGI	TGTACA	1 cut(s)	926
BsrI	ACTGG	2 cut(s)	422, 1473
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	5 cut(s)	300, 734, 963, 1011, 1542
BssMI	GATC	4 cut(s)	330, 615, 657, 843
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	2 cut(s)	300, 1542
Bst2UI	CCWGG	3 cut(s)	735, 1099, 1571
Bst4CI	ACNGT	6 cut(s)	23, 608, 1015, 1322, 1380, 1648
Bst6I	CTCTTC	2 cut(s)	342, 482
BstACI	GRCGYC	1 cut(s)	159
BstAPI	GCANNNNNTGC	2 cut(s)	593, 1361
BstAUI	TGTACA	1 cut(s)	926
BstC8I	GCNNGC	3 cut(s)	576, 1230, 1456
BstDEI	CTNAG	6 cut(s)	210, 987, 1104, 1119, 1201, 1608
BstDSI	CCRYGG	3 cut(s)	963, 1011, 1542
BstENI	CCTNNNNNAGG	1 cut(s)	1337
BstF5I	GGATG	4 cut(s)	366, 511, 1042, 1183
BstFNI	CGCG	4 cut(s)	138, 153, 246, 965
BstHHI	GCGC	4 cut(s)	155, 475, 853, 1091
BstKTI	GATC	4 cut(s)	333, 618, 660, 846
BstMAI	GTCTC	3 cut(s)	311, 851, 1121
BstMBI	GATC	4 cut(s)	330, 615, 657, 843
BstMCI	CGRYCG	1 cut(s)	618
BstMWI	GCNNNNNNNGC	8 cut(s)	498, 571, 584, 593, 761, 992, 1361, 1547
BstNI	CCWGG	3 cut(s)	735, 1099, 1571
BstSCI	CCNGG	6 cut(s)	516, 693, 733, 1097, 1238, 1569
BstSFI	CTRYAG	1 cut(s)	765
BstUI	CGCG	4 cut(s)	138, 153, 246, 965
BstV1I	GCAGC	5 cut(s)	739, 751, 1399, 1421, 1534
BstV2I	GAAGAC	1 cut(s)	641
Bsu15I	ATCGAT	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	1164
BsuRI	GGCC	3 cut(s)	512, 1097, 1332
BsuTUI	ATCGAT	1 cut(s)	430
BtgI	CCRYGG	3 cut(s)	963, 1011, 1542
BtsCI	GGATG	4 cut(s)	366, 511, 1042, 1183
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	5 cut(s)	603, 613, 1209, 1385, 1653
BveI	ACCTGC	1 cut(s)	1330
Cac8I	GCNNGC	3 cut(s)	576, 1230, 1456
CaiI	CAGNNNCTG	1 cut(s)	1136
CfoI	GCGC	4 cut(s)	155, 475, 853, 1091
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	4 cut(s)	148, 1095, 1330, 1495
Cfr42I	CCGCGG	1 cut(s)	966
ClaI	ATCGAT	1 cut(s)	430
CseI	GACGC	2 cut(s)	127, 634
Csp6I	GTAC	4 cut(s)	532, 927, 1006, 1476
CviAII	CATG	4 cut(s)	403, 959, 1543, 1552
CviQI	GTAC	4 cut(s)	532, 927, 1006, 1476
DdeI	CTNAG	6 cut(s)	210, 987, 1104, 1119, 1201, 1608
DpnI	GATC	4 cut(s)	332, 617, 659, 845
DpnII	GATC	4 cut(s)	330, 615, 657, 843
DraIII	CACNNNGTG	1 cut(s)	1382
Eam1104I	CTCTTC	2 cut(s)	342, 482
EarI	CTCTTC	2 cut(s)	342, 482
EciI	GGCGGA	1 cut(s)	905
Eco130I	CCWWGG	2 cut(s)	300, 1542
Eco24I	GRGCYC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	311
Eco32I	GATATC	2 cut(s)	1110, 1557
Eco47I	GGWCC	2 cut(s)	148, 1495
Eco57I	CTGAAG	1 cut(s)	823
EcoNI	CCTNNNNNAGG	1 cut(s)	1337
EcoO109I	RGGNCCY	1 cut(s)	1330
EcoRI	GAATTC	1 cut(s)	1309
EcoRII	CCWGG	3 cut(s)	733, 1097, 1569
EcoRV	GATATC	2 cut(s)	1110, 1557
EcoT14I	CCWWGG	2 cut(s)	300, 1542
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	2 cut(s)	300, 1542
Esp3I	CGTCTC	1 cut(s)	851
FaeI	CATG	4 cut(s)	406, 962, 1546, 1555
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FaqI	GGGAC	1 cut(s)	1255
FatI	CATG	4 cut(s)	402, 958, 1542, 1551
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	7 cut(s)	731, 753, 765, 963, 1410, 1413, 1548
FokI	GGATG	4 cut(s)	373, 518, 1049, 1190
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	7 cut(s)	731, 753, 765, 963, 1410, 1413, 1548
FspBI	CTAG	1 cut(s)	1272
FspI	TGCGCA	1 cut(s)	1090
GlaI	GCGC	4 cut(s)	154, 474, 852, 1090
GluI	GCNGC	7 cut(s)	731, 753, 765, 963, 1410, 1413, 1548
GsaI	CCCAGC	4 cut(s)	209, 654, 1035, 1308
GsuI	CTGGAG	3 cut(s)	662, 875, 1190
HaeIII	GGCC	3 cut(s)	512, 1097, 1332
HapII	CCGG	5 cut(s)	353, 518, 695, 946, 1239
HgaI	GACGC	2 cut(s)	127, 634
HhaI	GCGC	4 cut(s)	155, 475, 853, 1091
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	406, 962, 1546, 1555
Hin6I	GCGC	4 cut(s)	153, 473, 851, 1089
HinP1I	GCGC	4 cut(s)	153, 473, 851, 1089
HindIII	AAGCTT	2 cut(s)	381, 1634
HinfI	GANTC	9 cut(s)	284, 295, 568, 637, 1117, 1181, 1385, 1444, 1615
HpaII	CCGG	5 cut(s)	353, 518, 695, 946, 1239
HphI	GGTGA	4 cut(s)	210, 667, 1502, 1624
Hpy166II	GTNNAC	1 cut(s)	927
Hpy188I	TCNGA	7 cut(s)	55, 116, 424, 676, 801, 1158, 1609
Hpy188III	TCNNGA	8 cut(s)	312, 397, 452, 641, 841, 1169, 1441, 1592
Hpy8I	GTNNAC	1 cut(s)	927
Hpy99I	CGWCG	3 cut(s)	143, 161, 628
HpyAV	CCTTC	6 cut(s)	88, 715, 945, 1037, 1042, 1634
HpyCH4III	ACNGT	6 cut(s)	23, 608, 1015, 1322, 1380, 1648
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	7 cut(s)	587, 596, 767, 823, 1018, 1339, 1409
HpyF10VI	GCNNNNNNNGC	8 cut(s)	498, 571, 584, 593, 761, 992, 1361, 1547
HpyF3I	CTNAG	6 cut(s)	210, 987, 1104, 1119, 1201, 1608
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	406, 962, 1546, 1555
HspAI	GCGC	4 cut(s)	153, 473, 851, 1089
KspI	CCGCGG	1 cut(s)	966
Kzo9I	GATC	4 cut(s)	330, 615, 657, 843
LguI	GCTCTTC	2 cut(s)	342, 482
LmnI	GCTCC	3 cut(s)	105, 688, 937
Lsp1109I	GCAGC	5 cut(s)	739, 751, 1399, 1421, 1534
LweI	GCATC	2 cut(s)	351, 583
MaeI	CTAG	1 cut(s)	1272
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	461, 776, 1069
MalI	GATC	4 cut(s)	332, 617, 659, 845
MboI	GATC	4 cut(s)	330, 615, 657, 843
MboII	GAAGA	8 cut(s)	25, 359, 493, 496, 499, 646, 652, 1276
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	2 cut(s)	414, 693
MlyI	GAGTC	2 cut(s)	631, 1111
MmeI	TCCRAC	4 cut(s)	42, 78, 139, 582
MseI	TTAA	3 cut(s)	342, 705, 1002
MspA1I	CMGCKG	3 cut(s)	965, 1304, 1412
MspI	CCGG	5 cut(s)	353, 518, 695, 946, 1239
MspR9I	CCNGG	6 cut(s)	518, 695, 735, 1099, 1240, 1571
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	2 cut(s)	766, 1366
MvaI	CCWGG	3 cut(s)	735, 1099, 1571
MvnI	CGCG	4 cut(s)	138, 153, 246, 965
MwoI	GCNNNNNNNGC	8 cut(s)	498, 571, 584, 593, 761, 992, 1361, 1547
NciI	CCSGG	3 cut(s)	518, 695, 1240
NcoI	CCATGG	1 cut(s)	1542
NdeII	GATC	4 cut(s)	330, 615, 657, 843
NlaIII	CATG	4 cut(s)	406, 962, 1546, 1555
NlaIV	GGNNCC	4 cut(s)	729, 950, 1096, 1331
NmuCI	GTSAC	1 cut(s)	776
NsbI	TGCGCA	1 cut(s)	1090
PciSI	GCTCTTC	2 cut(s)	342, 482
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 620
PctI	GAATGC	2 cut(s)	766, 1366
PfeI	GAWTC	7 cut(s)	284, 295, 568, 1181, 1385, 1444, 1615
PflFI	GACNNNGTC	1 cut(s)	1132
PflMI	CCANNNNNTGG	1 cut(s)	1146
PkrI	GCNGC	7 cut(s)	732, 754, 766, 964, 1411, 1414, 1549
Ple19I	CGATCG	1 cut(s)	618
PleI	GAGTC	2 cut(s)	631, 1111
PpsI	GAGTC	2 cut(s)	631, 1111
Psp6I	CCWGG	3 cut(s)	733, 1097, 1569
PspFI	CCCAGC	4 cut(s)	205, 650, 1031, 1304
PspGI	CCWGG	3 cut(s)	733, 1097, 1569
PspN4I	GGNNCC	4 cut(s)	729, 950, 1096, 1331
PspPI	GGNCC	4 cut(s)	148, 1095, 1330, 1495
PstI	CTGCAG	1 cut(s)	769
PstNI	CAGNNNCTG	1 cut(s)	1136
PsyI	GACNNNGTC	1 cut(s)	1132
PvuI	CGATCG	1 cut(s)	618
PvuII	CAGCTG	2 cut(s)	1304, 1412
RsaI	GTAC	4 cut(s)	533, 928, 1007, 1477
RsaNI	GTAC	4 cut(s)	532, 927, 1006, 1476
SacII	CCGCGG	1 cut(s)	966
SapI	GCTCTTC	2 cut(s)	342, 482
SaqAI	TTAA	3 cut(s)	342, 705, 1002
SatI	GCNGC	7 cut(s)	731, 753, 765, 963, 1410, 1413, 1548
Sau3AI	GATC	4 cut(s)	330, 615, 657, 843
Sau96I	GGNCC	4 cut(s)	148, 1095, 1330, 1495
ScaI	AGTACT	2 cut(s)	533, 1007
SchI	GAGTC	2 cut(s)	631, 1111
ScrFI	CCNGG	6 cut(s)	518, 695, 735, 1099, 1240, 1571
SduI	GDGCHC	2 cut(s)	414, 693
SfaNI	GCATC	2 cut(s)	351, 583
SfcI	CTRYAG	1 cut(s)	765
Sfr303I	CCGCGG	1 cut(s)	966
SgrBI	CCGCGG	1 cut(s)	966
SinI	GGWCC	2 cut(s)	148, 1495
SmlI	CTYRAG	3 cut(s)	95, 365, 527
SmoI	CTYRAG	3 cut(s)	95, 365, 527
SsiI	CCGC	9 cut(s)	136, 151, 238, 244, 731, 890, 963, 965, 995
SspMI	CTAG	1 cut(s)	1272
StyD4I	CCNGG	6 cut(s)	516, 693, 733, 1097, 1238, 1569
StyI	CCWWGG	2 cut(s)	300, 1542
TaaI	ACNGT	6 cut(s)	23, 608, 1015, 1322, 1380, 1648
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	8 cut(s)	287, 293, 311, 430, 614, 668, 830, 1366
TatI	WGTACW	3 cut(s)	531, 926, 1005
TauI	GCSGC	2 cut(s)	733, 965
TfiI	GAWTC	7 cut(s)	284, 295, 568, 1181, 1385, 1444, 1615
Tru1I	TTAA	3 cut(s)	342, 705, 1002
Tru9I	TTAA	3 cut(s)	342, 705, 1002
TscAI	CASTG	5 cut(s)	603, 613, 1209, 1385, 1653
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	5 cut(s)	752, 764, 1409, 1412, 1547
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	2 cut(s)	419, 947
TspRI	CASTG	5 cut(s)	603, 613, 1209, 1385, 1653
Tth111I	GACNNNGTC	1 cut(s)	1132
Van91I	CCANNNNNTGG	1 cut(s)	1146
VpaK11BI	GGWCC	2 cut(s)	148, 1495
XagI	CCTNNNNNAGG	1 cut(s)	1337
XapI	RAATTY	6 cut(s)	260, 392, 445, 825, 1309, 1369
XspI	CTAG	1 cut(s)	1272
ZraI	GACGTC	1 cut(s)	160
ZrmI	AGTACT	2 cut(s)	533, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.