Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

2153792 .. 2155181

Gene Structure 1390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28474

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTACATGATACTACCCTGTTATTCTAGGTCATCGCAAAATCTATTATACAAGGCAAAGAATACAAGAAGTAGAGTTATTTCAAAGGGTATATCAGCTGGGAATTCAAGGAACTGTTATCGGGGGCTTGTTCAGGTTTTTTCACAGGCAGAGAATGCTCGAAATTCCTCCCAATGTGATTCAATGCTTATTGGAGATAATGCAGCTTCCAACACCTACCCATACATTGAGATAATTGTCTTTGATCTTGTCAAGAATCCCACAGCTCGCACTGAACACGAAGCCAGTACCTCCAAAATTGGTGAAGACCAGCTATTTTACTTTCAGCAAAGGGGAATAGACTATGAGAAAGCCATGGCTGCCATGATATCTGGTTTTTGCCAGGCAGTATTCAATGAGCTTCCTGATGAGTTTGGGTCTGAGGTGAATCAACTGATTGGCTTGAAGCTTGAAGGAACAGTGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0030003 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048583 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

155

Amino Acids

17.25

Weight (kDa)

5.84

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUFBD_core	PF01458	17 - 126	1.4e-30	SUF system FeS cluster assembly, SufBD core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	103, 163
AfaI	GTAC	2 cut(s)	5, 289
AgsI	TTSAA	6 cut(s)	84, 108, 183, 394, 445, 452
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	6 cut(s)	98, 206, 266, 313, 400, 448
AluI	AGCT	6 cut(s)	98, 206, 266, 313, 400, 448
ApeKI	GCWGC	2 cut(s)	203, 359
ApoI	RAATTY	2 cut(s)	103, 163
AsuHPI	GGTGA	2 cut(s)	314, 436
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	215, 346
BciT130I	CCWGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	2 cut(s)	204, 360
BlsI	GCNGC	2 cut(s)	205, 361
Bme1390I	CCNGG	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	215, 346
BseYI	CCCAGC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	244
Bsp19I	CCATGG	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	412
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	116, 460
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	354
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 359
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	215, 346
BstV2I	GAAGAC	1 cut(s)	312
BtgI	CCRYGG	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	270, 465
Cac8I	GCNNGC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	4, 288
CviAII	CATG	3 cut(s)	7, 355, 364
CviQI	GTAC	2 cut(s)	4, 288
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	3 cut(s)	10, 358, 367
FaiI	YATR	7 cut(s)	8, 49, 92, 223, 345, 356, 365
FatI	CATG	3 cut(s)	6, 354, 363
Fnu4HI	GCNGC	2 cut(s)	204, 360
Fsp4HI	GCNGC	2 cut(s)	204, 360
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	2 cut(s)	204, 360
GsaI	CCCAGC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	10, 358, 367
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	3 cut(s)	179, 256, 427
HphI	GGTGA	2 cut(s)	314, 436
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	2 cut(s)	253, 404
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	2 cut(s)	116, 460
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 359
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	10, 358, 367
Kzo9I	GATC	1 cut(s)	244
Lsp1109I	GCAGC	2 cut(s)	215, 346
MaeI	CTAG	1 cut(s)	27
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	317
MluCI	AATT	4 cut(s)	103, 163, 234, 297
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	3 cut(s)	178, 301, 415
MspA1I	CMGCKG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	2 cut(s)	155, 359
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	10, 358, 367
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	3 cut(s)	179, 256, 427
PkrI	GCNGC	2 cut(s)	205, 361
Psp6I	CCWGG	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	381
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	5, 289
RsaNI	GTAC	2 cut(s)	4, 288
SatI	GCNGC	2 cut(s)	204, 360
Sau3AI	GATC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	383
Sse9I	AATT	4 cut(s)	103, 163, 234, 297
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	116, 460
TaqI	TCGA	1 cut(s)	160
TasI	AATT	4 cut(s)	103, 163, 234, 297
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	3 cut(s)	179, 256, 427
TscAI	CASTG	2 cut(s)	277, 465
TseI	GCWGC	2 cut(s)	203, 359
TspRI	CASTG	2 cut(s)	277, 465
XapI	RAATTY	2 cut(s)	103, 163
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.