Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

58821859 .. 58823100

Gene Structure 1242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26666

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGAAGATAGTGACATACACAACTTGAAGTCAGAAACTCTGCACCAGCAGTATGAACTGGTCAAGAATCCTATAGCTCGCATTGAACACGAAGCCAATACCTCCAAAATTGGTGAAGACCATCAATTTTACTTTCAGCAAAGGGGAATAGACTATGAGAAAGCCATGGCTGCCATGATTTCTTGTTTTTGCCAGACAGTATTCAATGAGCTTCCTGACGAGTTTGGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0030003 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048583 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

77

Amino Acids

8.97

Weight (kDa)

4.7

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUFBD_core	PF01458	24 - 62	3.4e-08	SUF system FeS cluster assembly, SufBD core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	28, 86, 205
AluBI	AGCT	2 cut(s)	77, 211
AluI	AGCT	2 cut(s)	77, 211
ApeKI	GCWGC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	79
CviAII	CATG	2 cut(s)	166, 175
CviJI	RGCY	5 cut(s)	77, 95, 164, 170, 211
CviKI_1	RGCY	5 cut(s)	77, 95, 164, 170, 211
DdeI	CTNAG	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	169, 178
FaiI	YATR	6 cut(s)	17, 54, 74, 156, 167, 176
FatI	CATG	2 cut(s)	165, 174
Fnu4HI	GCNGC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	169, 178
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	64, 215
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	169, 178
LpnPI	CCDG	4 cut(s)	44, 59, 206, 228
Lsp1109I	GCAGC	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	11
MboII	GAAGA	2 cut(s)	17, 128
MluCI	AATT	2 cut(s)	108, 125
MnlI	CCTC	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	165
NlaIII	CATG	2 cut(s)	169, 178
NmuCI	GTSAC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	172
SatI	GCNGC	1 cut(s)	171
SetI	ASST	3 cut(s)	79, 104, 213
SfcI	CTRYAG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	108, 125
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	199
TasI	AATT	2 cut(s)	108, 125
TfiI	GAWTC	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.