Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009227.1

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1637

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009227.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgggttattccatctgggaaatagcgaaggccttcattgagaccactttgagctcgcagttaacctctacacccaggccatcgccgtcgaccctaacaactcagagttctactccgaccacgctcaggccaacatcaaatccaacaatctcactggttcaaggaccagttgggactgtcactgaaggagagaattccgccaaggaaaatgagaaactggaagaagggtcaggccataatgagcccataaaatttggatcacatggtgatgaaaaggctaaaaaggaagggaatggggtcgcggtacaaaacttccctgaagatgcagttgatgagtggcctgcccctaagcagaaccattctttttattttgtcaggtaccggacatatgatgatccaaagctaaaagccaaaattgagcaggctaatgtagaagttcagaagaagaatcaggctcgatctcaagtccttgaagcattaaatccaaagagggtatatagagtttttgatatggaacttgtgagaattctcactagtgcagaagatgagttcaacgtagcttgttttcatccctctgtaggaggtggccttgtttatggaactaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.32

Weight (kDa)

5.87

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	378
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	1 cut(s)	302
AciI	CCGC	2 cut(s)	198, 302
AclWI	GGATC	2 cut(s)	265, 389
AcsI	RAATTY	3 cut(s)	193, 251, 525
AcuI	CTGAAG	2 cut(s)	204, 339
AdeI	CACNNNGTG	1 cut(s)	266
AfaI	GTAC	2 cut(s)	306, 380
AfiI	CCNNNNNNNGG	2 cut(s)	126, 578
AgsI	TTSAA	3 cut(s)	161, 473, 553
AhlI	ACTAGT	1 cut(s)	533
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	3 cut(s)	54, 403, 560
AluI	AGCT	3 cut(s)	54, 403, 560
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	265, 389
AoxI	GGCC	6 cut(s)	30, 77, 128, 232, 338, 586
ApoI	RAATTY	3 cut(s)	193, 251, 525
Asp700I	GAANNNNTTC	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	378
BanII	GRGCYC	2 cut(s)	56, 246
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	2 cut(s)	20, 88
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	35
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	576
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	313
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
Bpu10I	CCTNAGC	2 cut(s)	125, 348
BpuEI	CTTGAG	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	74, 201
BsaWI	WCCGGW	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 578
Bse1I	ACTGG	3 cut(s)	159, 167, 222
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	74, 201
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	2 cut(s)	126, 578
BseMII	CTCAG	2 cut(s)	116, 139
BseNI	ACTGG	3 cut(s)	159, 167, 222
BsgI	GTGCAG	1 cut(s)	558
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	6 cut(s)	32, 79, 130, 234, 340, 588
BshNI	GGYRCC	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	126, 578
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	6 cut(s)	32, 79, 130, 234, 340, 588
Bso31I	GGTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	56, 246
Bsp143I	GATC	3 cut(s)	257, 394, 458
BspACI	CCGC	2 cut(s)	198, 302
BspANI	GGCC	6 cut(s)	32, 79, 130, 234, 340, 588
BspCNI	CTCAG	2 cut(s)	115, 138
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	265, 389
BspT107I	GGYRCC	1 cut(s)	378
BspTNI	GGTCTC	1 cut(s)	35
BsrI	ACTGG	3 cut(s)	159, 167, 222
BssECI	CCNNGG	2 cut(s)	74, 201
BssMI	GATC	3 cut(s)	257, 394, 458
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	178
BstC8I	GCNNGC	3 cut(s)	56, 342, 423
BstDEI	CTNAG	4 cut(s)	102, 125, 348, 603
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	1 cut(s)	302
BstKTI	GATC	3 cut(s)	260, 397, 461
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	3 cut(s)	257, 394, 458
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	576
BstUI	CGCG	1 cut(s)	302
BsuRI	GGCC	6 cut(s)	32, 79, 130, 234, 340, 588
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	568
BtsIMutI	CAGTG	2 cut(s)	152, 180
Cac8I	GCNNGC	3 cut(s)	56, 342, 423
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	305, 379
CviAII	CATG	1 cut(s)	263
CviQI	GTAC	2 cut(s)	305, 379
DdeI	CTNAG	4 cut(s)	102, 125, 348, 603
DpnI	GATC	3 cut(s)	259, 396, 460
DpnII	GATC	3 cut(s)	257, 394, 458
DraIII	CACNNNGTG	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	56, 246
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	204, 339
EcoICRI	GAGCTC	1 cut(s)	54
EcoRI	GAATTC	2 cut(s)	193, 525
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	2 cut(s)	56, 246
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	266
FaiI	YATR	9 cut(s)	237, 248, 264, 388, 390, 496, 498, 512, 597
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	262
FauNDI	CATATG	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	89
FokI	GGATG	1 cut(s)	555
FriOI	GRGCYC	2 cut(s)	56, 246
FspBI	CTAG	1 cut(s)	534
HaeIII	GGCC	6 cut(s)	32, 79, 130, 234, 340, 588
HapII	CCGG	1 cut(s)	382
Hin1II	CATG	1 cut(s)	266
HincII	GTYRAC	2 cut(s)	63, 90
HindII	GTYRAC	2 cut(s)	63, 90
HinfI	GANTC	1 cut(s)	448
HpaI	GTTAAC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	63, 90
Hpy188I	TCNGA	3 cut(s)	105, 117, 441
Hpy8I	GTNNAC	2 cut(s)	63, 90
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	5 cut(s)	22, 43, 179, 218, 281
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	2 cut(s)	326, 539
HpyF3I	CTNAG	4 cut(s)	102, 125, 348, 603
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	1 cut(s)	266
KpnI	GGTACC	1 cut(s)	382
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	257, 394, 458
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	259, 396, 460
MboI	GATC	3 cut(s)	257, 394, 458
MboII	GAAGA	5 cut(s)	233, 332, 454, 457, 554
MhlI	GDGCHC	2 cut(s)	56, 246
MluCI	AATT	4 cut(s)	193, 251, 414, 525
MmeI	TCCRAC	2 cut(s)	140, 167
MnlI	CCTC	4 cut(s)	76, 483, 575, 583
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	2 cut(s)	62, 479
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	3 cut(s)	257, 394, 458
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	380
PspPI	GGNCC	1 cut(s)	164
RsaI	GTAC	2 cut(s)	306, 380
RsaNI	GTAC	2 cut(s)	305, 379
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	56
SalI	GTCGAC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	62, 479
Sau3AI	GATC	3 cut(s)	257, 394, 458
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	2 cut(s)	56, 246
SetI	ASST	7 cut(s)	56, 68, 380, 405, 558, 562, 586
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	4 cut(s)	193, 251, 414, 525
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	2 cut(s)	198, 302
SspMI	CTAG	1 cut(s)	534
SstI	GAGCTC	1 cut(s)	56
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	2 cut(s)	89, 457
TasI	AATT	4 cut(s)	193, 251, 414, 525
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	2 cut(s)	62, 479
Tru9I	TTAA	2 cut(s)	62, 479
TscAI	CASTG	2 cut(s)	159, 187
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	25, 285, 557
TspRI	CASTG	2 cut(s)	159, 187
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	3 cut(s)	193, 251, 525
XmiI	GTMKAC	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.