Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

38579168 .. 38585972

Gene Structure 6805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAACGACGTGTGCAACGAGTCGGCTAAGGCCTTGAAAGAGCAATGGGTGACCAAGGTCAATAATCCTACAACTCACATTGAACATGAAGCCAGTACCTCCAAAATTGGTGAAGACCGGCAAGTTTACTTTCAGCAAAGGGGAATAGACTATGAGAAAGCCATGGCTGCCATGATATCTCGCTTTTGCCGTGCACTATTCGGTGAGCTTCCCGATGAGTTTGGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0030003 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048583 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

76

Amino Acids

8.67

Weight (kDa)

5.26

Isoelectric Point (pI)

24.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUFBD_core	PF01458	20 - 61	8.5e-07	SUF system FeS cluster assembly, SufBD core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	37, 83
AjiI	CACGTC	1 cut(s)	10
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	196
Alw44I	GTGCAC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	30
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	61, 122, 215
BaeGI	GKGCMC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	174
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
BmgBI	CACGTC	1 cut(s)	10
BoxI	GACNNNNGTC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	54, 162
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	54, 162
BseMI	GCAATG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	118
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp19I	CCATGG	1 cut(s)	162
BspANI	GGCC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	54, 162
BssT1I	CCWWGG	2 cut(s)	54, 162
BstDEI	CTNAG	2 cut(s)	27, 228
BstDSI	CCRYGG	1 cut(s)	162
BstEII	GGTNACC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstPAI	GACNNNNGTC	1 cut(s)	56
BstPI	GGTNACC	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	3 cut(s)	86, 163, 172
CviJI	RGCY	6 cut(s)	26, 32, 92, 161, 167, 208
CviKI_1	RGCY	6 cut(s)	26, 32, 92, 161, 167, 208
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	2 cut(s)	27, 228
Eco130I	CCWWGG	2 cut(s)	54, 162
Eco147I	AGGCCT	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	177
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	177
EcoT14I	CCWWGG	2 cut(s)	54, 162
ErhI	CCWWGG	2 cut(s)	54, 162
FaeI	CATG	3 cut(s)	89, 166, 175
FaiI	YATR	4 cut(s)	87, 153, 164, 173
FatI	CATG	3 cut(s)	85, 162, 171
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	3 cut(s)	89, 166, 175
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	3 cut(s)	61, 122, 215
Hpy166II	GTNNAC	2 cut(s)	127, 194
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	2 cut(s)	127, 194
Hpy99I	CGWCG	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	15, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	27, 228
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	89, 166, 175
LpnPI	CCDG	2 cut(s)	106, 131
Lsp1109I	GCAGC	1 cut(s)	154
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	1 cut(s)	109
MspI	CCGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	162
NlaIII	CATG	3 cut(s)	89, 166, 175
NmuCI	GTSAC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 187
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PshAI	GACNNNNGTC	1 cut(s)	56
PspEI	GGTNACC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SatI	GCNGC	1 cut(s)	168
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	4 cut(s)	12, 60, 101, 210
Sse9I	AATT	1 cut(s)	105
SseBI	AGGCCT	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	32
StyI	CCWWGG	2 cut(s)	54, 162
TaiI	ACGT	1 cut(s)	12
TasI	AATT	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	17, 102
VneI	GTGCAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.