Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

2137464 .. 2138954

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28472

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGAGCTGGGAATTCAAGGAACTGTTATCGGGGGCCTTGTGCAGGTTATTGGACGCCTACCCACACATTGAGGTCAAGAATCCCACAGCTCGCATTGAACACGAAGCCAGTACCTCCAAAATTGGTGAAGACCAGCTATTTTACCTTCAGCAAAGGGGAATAGGCTATGAGAAGCCATGGCTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0030003 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048583 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

62

Amino Acids

7.21

Weight (kDa)

5.55

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUFBD_core	PF01458	18 - 56	9.5e-13	SUF system FeS cluster assembly, SufBD core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	16, 98
AluBI	AGCT	3 cut(s)	6, 89, 136
AluI	AGCT	3 cut(s)	6, 89, 136
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	33
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	168
BseYI	CCCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	42
BsnI	GGCC	1 cut(s)	35
Bsp19I	CCATGG	1 cut(s)	176
BspANI	GGCC	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	176
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	176
BstENI	CCTNNNNNAGG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	35
BtgI	CCRYGG	1 cut(s)	176
BveI	ACCTGC	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	33
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	2 cut(s)	177, 186
CviJI	RGCY	8 cut(s)	6, 35, 89, 107, 136, 165, 175, 181
CviKI_1	RGCY	8 cut(s)	6, 35, 89, 107, 136, 165, 175, 181
CviQI	GTAC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	2 cut(s)	180, 189
FaiI	YATR	3 cut(s)	168, 178, 187
FatI	CATG	2 cut(s)	176, 185
Fnu4HI	GCNGC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	182
GsaI	CCCAGC	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	35
HgaI	GACGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	180, 189
HinfI	GANTC	1 cut(s)	79
HphI	GGTGA	1 cut(s)	137
Hpy188III	TCNNGA	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	2 cut(s)	180, 189
LpnPI	CCDG	3 cut(s)	28, 121, 146
Lsp1109I	GCAGC	1 cut(s)	168
MboII	GAAGA	1 cut(s)	140
MluCI	AATT	2 cut(s)	11, 120
MnlI	CCTC	2 cut(s)	64, 124
MwoI	GCNNNNNNNGC	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	176
NlaIII	CATG	2 cut(s)	180, 189
NlaIV	GGNNCC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SatI	GCNGC	1 cut(s)	182
Sau96I	GGNCC	1 cut(s)	33
SetI	ASST	7 cut(s)	8, 47, 75, 91, 116, 138, 147
Sse9I	AATT	2 cut(s)	11, 120
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	24
TasI	AATT	2 cut(s)	11, 120
TfiI	GAWTC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	181
XagI	CCTNNNNNAGG	1 cut(s)	40
XapI	RAATTY	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.