Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003162.1

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

12244 .. 13413

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003162.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgggttattcgatctgggaaatagcgaaggccttcattgagaccactttgagctcgccgttgacctctacacccaagccatcgctgtcgaccccaacaactctgagttctactccgaccgcgctcaggccaacatcaaatccaacaatctcactggttcaaggaccagttgggactgtcactgaaggagagaattctgctaaggaaaatgagaaactggaagaagggtcaggccataatgagcccataaaatttggatcacatggtgatgaaatggctaaaaagaaatggaatggggtcgcggtacaaaacttccctgaagatgcagttgatgagtggcctgcccctaagcagaaccattctttttattttgtcaggtaccggacatatgatgatccaaagctaaaagccaaaattgagcaggctaatgtagaagttcagaagaagaatcaggctcgatctcgagtccttgaagcattaaatgcaaagatggagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.34

Weight (kDa)

6.32

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	378
AccI	GTMKAC	1 cut(s)	89
AccII	CGCG	2 cut(s)	122, 302
AciI	CCGC	2 cut(s)	120, 302
AclWI	GGATC	2 cut(s)	265, 389
AcsI	RAATTY	2 cut(s)	193, 251
AcuI	CTGAAG	2 cut(s)	204, 339
AdeI	CACNNNGTG	1 cut(s)	266
AfaI	GTAC	2 cut(s)	306, 380
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	161, 473
AluBI	AGCT	2 cut(s)	54, 403
AluI	AGCT	2 cut(s)	54, 403
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	265, 389
Ama87I	CYCGRG	1 cut(s)	462
AoxI	GGCC	4 cut(s)	30, 128, 232, 338
ApoI	RAATTY	2 cut(s)	193, 251
Asp700I	GAANNNNTTC	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	462
AvaII	GGWCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	378
BanII	GRGCYC	2 cut(s)	56, 246
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	2 cut(s)	88, 484
BceAI	ACGGC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	380
BmsI	GCATC	1 cut(s)	313
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
Bpu10I	CCTNAGC	3 cut(s)	125, 201, 348
BsaI	GGTCTC	1 cut(s)	35
BsaWI	WCCGGW	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse1I	ACTGG	3 cut(s)	159, 167, 222
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	95, 139
BseNI	ACTGG	3 cut(s)	159, 167, 222
Bsh1236I	CGCG	2 cut(s)	122, 302
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	4 cut(s)	32, 130, 234, 340
BshNI	GGYRCC	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	4 cut(s)	32, 130, 234, 340
Bso31I	GGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	462
Bsp1286I	GDGCHC	2 cut(s)	56, 246
Bsp143I	GATC	4 cut(s)	12, 257, 394, 458
BspACI	CCGC	2 cut(s)	120, 302
BspANI	GGCC	4 cut(s)	32, 130, 234, 340
BspCNI	CTCAG	2 cut(s)	96, 138
BspFNI	CGCG	2 cut(s)	122, 302
BspLI	GGNNCC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	265, 389
BspT107I	GGYRCC	1 cut(s)	378
BspTNI	GGTCTC	1 cut(s)	35
BsrI	ACTGG	3 cut(s)	159, 167, 222
BssMI	GATC	4 cut(s)	12, 257, 394, 458
Bst4CI	ACNGT	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstC8I	GCNNGC	3 cut(s)	56, 342, 423
BstDEI	CTNAG	4 cut(s)	104, 125, 201, 348
BstFNI	CGCG	2 cut(s)	122, 302
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	4 cut(s)	15, 260, 397, 461
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	4 cut(s)	12, 257, 394, 458
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstUI	CGCG	2 cut(s)	122, 302
BsuRI	GGCC	4 cut(s)	32, 130, 234, 340
BtgZI	GCGATG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	152, 180
Cac8I	GCNNGC	3 cut(s)	56, 342, 423
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	305, 379
CviAII	CATG	1 cut(s)	263
CviQI	GTAC	2 cut(s)	305, 379
DdeI	CTNAG	4 cut(s)	104, 125, 201, 348
DpnI	GATC	4 cut(s)	14, 259, 396, 460
DpnII	GATC	4 cut(s)	12, 257, 394, 458
DraIII	CACNNNGTG	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	56, 246
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	204, 339
Eco88I	CYCGRG	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	54
EcoRI	GAATTC	1 cut(s)	193
EcoT38I	GRGCYC	2 cut(s)	56, 246
FaeI	CATG	1 cut(s)	266
FaiI	YATR	5 cut(s)	237, 248, 264, 388, 390
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	262
FauNDI	CATATG	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	89
FriOI	GRGCYC	2 cut(s)	56, 246
GlaI	GCGC	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	32, 130, 234, 340
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	2 cut(s)	63, 90
HindII	GTYRAC	2 cut(s)	63, 90
HinfI	GANTC	2 cut(s)	448, 465
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	63, 90
Hpy188I	TCNGA	3 cut(s)	105, 117, 441
Hpy188III	TCNNGA	1 cut(s)	462
Hpy8I	GTNNAC	2 cut(s)	63, 90
HpyAV	CCTTC	4 cut(s)	22, 43, 179, 218
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	326, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	4 cut(s)	104, 125, 201, 348
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	122
KpnI	GGTACC	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	12, 257, 394, 458
LweI	GCATC	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	4 cut(s)	14, 259, 396, 460
MboI	GATC	4 cut(s)	12, 257, 394, 458
MboII	GAAGA	4 cut(s)	233, 332, 454, 457
MhlI	GDGCHC	2 cut(s)	56, 246
MluCI	AATT	3 cut(s)	193, 251, 414
MlyI	GAGTC	1 cut(s)	474
MmeI	TCCRAC	2 cut(s)	140, 167
MnlI	CCTC	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	1 cut(s)	479
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	382
MvnI	CGCG	2 cut(s)	122, 302
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	4 cut(s)	12, 257, 394, 458
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	178
PaeR7I	CTCGAG	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	448
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	380
PspPI	GGNCC	1 cut(s)	164
RsaI	GTAC	2 cut(s)	306, 380
RsaNI	GTAC	2 cut(s)	305, 379
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	56
SalI	GTCGAC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	479
Sau3AI	GATC	4 cut(s)	12, 257, 394, 458
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	474
SduI	GDGCHC	2 cut(s)	56, 246
SetI	ASST	4 cut(s)	56, 68, 380, 405
SfaNI	GCATC	1 cut(s)	313
Sfr274I	CTCGAG	1 cut(s)	462
SinI	GGWCC	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
Sse9I	AATT	3 cut(s)	193, 251, 414
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	2 cut(s)	120, 302
SstI	GAGCTC	1 cut(s)	56
StuI	AGGCCT	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	4 cut(s)	11, 89, 457, 463
TasI	AATT	3 cut(s)	193, 251, 414
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	2 cut(s)	159, 187
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	25, 285
TspRI	CASTG	2 cut(s)	159, 187
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	2 cut(s)	193, 251
XhoI	CTCGAG	1 cut(s)	462
XmiI	GTMKAC	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.