Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Forward (+)

22901588 .. 22902095

Gene Structure 508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033068

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGGGTCGAAGATTTGGGATTTGAGAAGGTCCAAGGACCAGTTGGGACTGTCACTGAACGAGAGAATTCCGCCAAGGAAAATGGGAAACTGGAAGAAGGGTCAGGCCATAATGAGCCCATAAAATTTGGATTACATGGTGATGAAATGGCTAAAAAGGAAGGGAATGGGGTCGCGGTACAAAACTTCCCTCAAGATGCAGTTGATGAGTGGCCTACCCCTAAGCAGATCCATTCTTTTTTTTTTGTCAGGTACCAGACATGTGATGATCCAAAGTTAAAAGCCAAAATTGAGCAGGCTAATGTAGAAGTTGAGAAGAAGAATCAGGCTCGATCTCGAGTCCTTGAAGCATTAAATGCAAAGAGGATATATGGCATTAAAACATTGAAACAGAGGCTCTCATCCGCTGCTACTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.6

Weight (kDa)

6.32

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	252
AccII	CGCG	1 cut(s)	176
AciI	CCGC	3 cut(s)	72, 176, 405
AclWI	GGATC	2 cut(s)	223, 263
AcsI	RAATTY	2 cut(s)	67, 125
AfaI	GTAC	2 cut(s)	180, 254
AflIII	ACRYGT	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	347, 388
AlwI	GGATC	2 cut(s)	223, 263
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	106, 212
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	67, 125
Asp718I	GGTACC	1 cut(s)	252
AspS9I	GGNCC	2 cut(s)	31, 38
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	31, 38
BanI	GGYRCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	394
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme18I	GGWCC	2 cut(s)	31, 38
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	31, 38
BmiI	GGNNCC	1 cut(s)	254
BmsI	GCATC	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	34, 75
Bse1I	ACTGG	2 cut(s)	41, 96
BseDI	CCNNGG	2 cut(s)	34, 75
BseGI	GGATG	1 cut(s)	401
BseNI	ACTGG	2 cut(s)	41, 96
BseXI	GCAGC	1 cut(s)	394
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	108, 214
BshNI	GGYRCC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	108, 214
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	228, 268, 332
BspACI	CCGC	3 cut(s)	72, 176, 405
BspANI	GGCC	2 cut(s)	108, 214
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	2 cut(s)	223, 263
BspT107I	GGYRCC	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	41, 96
BssECI	CCNNGG	2 cut(s)	34, 75
BssMI	GATC	3 cut(s)	228, 268, 332
BssT1I	CCWWGG	2 cut(s)	34, 75
Bst4CI	ACNGT	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	401
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	3 cut(s)	231, 271, 335
BstMBI	GATC	3 cut(s)	228, 268, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	264
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	108, 214
BtsCI	GGATG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	31, 38
Csp6I	GTAC	2 cut(s)	179, 253
CviAII	CATG	2 cut(s)	137, 261
CviJI	RGCY	8 cut(s)	108, 118, 152, 214, 284, 299, 329, 397
CviKI_1	RGCY	8 cut(s)	108, 118, 152, 214, 284, 299, 329, 397
CviQI	GTAC	2 cut(s)	179, 253
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	230, 270, 334
DpnII	GATC	3 cut(s)	228, 268, 332
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	34, 75
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	31, 38
Eco88I	CYCGRG	1 cut(s)	336
EcoRI	GAATTC	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	34, 75
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	2 cut(s)	34, 75
FaeI	CATG	2 cut(s)	140, 264
FaiI	YATR	7 cut(s)	111, 122, 138, 262, 370, 372, 421
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	2 cut(s)	136, 260
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	1 cut(s)	388
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	108, 214
Hin1II	CATG	2 cut(s)	140, 264
HinfI	GANTC	2 cut(s)	322, 339
HphI	GGTGA	1 cut(s)	152
Hpy188III	TCNNGA	2 cut(s)	194, 336
HpyAV	CCTTC	3 cut(s)	22, 92, 155
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	200, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	140, 264
KpnI	GGTACC	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	228, 268, 332
LpnPI	CCDG	7 cut(s)	54, 77, 90, 235, 269, 281, 311
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	230, 270, 334
MboI	GATC	3 cut(s)	228, 268, 332
MboII	GAAGA	4 cut(s)	23, 107, 328, 331
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	67, 125, 288
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	201, 357, 387
MseI	TTAA	3 cut(s)	278, 353, 378
MslI	CAYNNNNRTG	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	3 cut(s)	228, 268, 332
NlaIII	CATG	2 cut(s)	140, 264
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	264
PaeR7I	CTCGAG	1 cut(s)	336
PciI	ACATGT	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PscI	ACATGT	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	2 cut(s)	31, 38
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	2 cut(s)	180, 254
RsaNI	GTAC	2 cut(s)	179, 253
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	278, 353, 378
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	3 cut(s)	228, 268, 332
Sau96I	GGNCC	2 cut(s)	31, 38
SchI	GAGTC	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	2 cut(s)	33, 254
SfaNI	GCATC	1 cut(s)	187
Sfr274I	CTCGAG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	31, 38
SlaI	CTCGAG	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	192, 336
SmoI	CTYRAG	2 cut(s)	192, 336
Sse9I	AATT	3 cut(s)	67, 125, 288
SsiI	CCGC	3 cut(s)	72, 176, 405
StyI	CCWWGG	2 cut(s)	34, 75
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	3 cut(s)	9, 331, 337
TasI	AATT	3 cut(s)	67, 125, 288
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	3 cut(s)	278, 353, 378
Tru9I	TTAA	3 cut(s)	278, 353, 378
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	31, 38
XapI	RAATTY	2 cut(s)	67, 125
XceI	RCATGY	1 cut(s)	264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.