Rmu_sc0009017.1_g000003

UPF0051 protein ABCI8

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009017.1
Physical Location & Seq
Forward (+)
20004 .. 21585
1582 bp
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UTR
Exon/CDS
Intron
Rmu_sc0009017.1_g000003.1.cds

Sequence Viewer

Length: 222 bp
atgattattggagataatgcagctgccaacacctacccatacattgaggtcaagaatcctacagctcgcattgaacatgaagccagtacctccaaaattggtgaagaccagcaattttactttcagcaaaggggaatagactatgagaaagccatggttgccatgatatctcgtttttgccaggcagtattcaatgagcttcctgacgagtttgggtcttag

Protein Analysis

73

Amino Acids

8.3

Weight (kDa)

4.57

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 2 cut(s) 74, 193
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 3 cut(s) 23, 65, 199
AluI AGCT 3 cut(s) 23, 65, 199
ApeKI GCWGC 2 cut(s) 20, 23
AsuHPI GGTGA 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 2 cut(s) 10, 32
BciT130I CCWGG 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 2 cut(s) 21, 24
BlsI GCNGC 2 cut(s) 22, 25
Bme1390I CCNGG 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 10, 32
Bsp19I CCATGG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 10, 32
BstV2I GAAGAC 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 87
CviAII CATG 3 cut(s) 77, 154, 163
CviJI RGCY 5 cut(s) 23, 65, 83, 152, 199
CviKI_1 RGCY 5 cut(s) 23, 65, 83, 152, 199
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 153
Eco32I GATATC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 180
EcoRV GATATC 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 80, 157, 166
FaiI YATR 5 cut(s) 40, 78, 144, 155, 164
FatI CATG 3 cut(s) 76, 153, 162
Fnu4HI GCNGC 2 cut(s) 21, 24
Fsp4HI GCNGC 2 cut(s) 21, 24
GluI GCNGC 2 cut(s) 21, 24
Hin1II CATG 3 cut(s) 80, 157, 166
HinfI GANTC 1 cut(s) 55
HphI GGTGA 1 cut(s) 113
Hpy188III TCNNGA 2 cut(s) 52, 203
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 3 cut(s) 80, 157, 166
LpnPI CCDG 5 cut(s) 97, 122, 167, 194, 216
Lsp1109I GCAGC 2 cut(s) 10, 32
MboII GAAGA 1 cut(s) 116
MluCI AATT 2 cut(s) 96, 113
MnlI CCTC 2 cut(s) 40, 100
MspA1I CMGCKG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 158
NcoI CCATGG 1 cut(s) 153
NlaIII CATG 3 cut(s) 80, 157, 166
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 22, 25
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SatI GCNGC 2 cut(s) 21, 24
ScrFI CCNGG 1 cut(s) 182
SetI ASST 6 cut(s) 25, 35, 51, 67, 92, 201
SfcI CTRYAG 1 cut(s) 60
Sse9I AATT 2 cut(s) 96, 113
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 153
TasI AATT 2 cut(s) 96, 113
TfiI GAWTC 1 cut(s) 55
TseI GCWGC 2 cut(s) 20, 23
TspDTI ATGAA 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.