Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001524.1

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Forward (+)

16865 .. 17852

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001524.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgggttattcgatctgggaaatagcgaaggccttcatcaacgaccagtttgagctcgccgttgacctctacacccaggccatcgccgtcgaccccaacaactccgagttttgctccaacaacgctcaggccaacatcaaatccaataatctcaccgctacgggtaaccaagatttgaattcgaacaatggagctgtggatttgggattgaaggcaaaaatgtcaaaattggggctaagaaggtttctaggactttggtctgtaaggctgttctttggtggaagatatggggtcgaagatttgggatttgagaaggtccaaggaccagttgggactgtcattgaaggagagaattccaccaaggaaaatgggaaattagaagaagggtcaggccataatgagcccataaaatttggttcacatggtgatgaaatggctaaaaaggaaaggaatggggtcaatggcgatggaacttgtgagaattctccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.63

Weight (kDa)

4.96

Isoelectric Point (pI)

23.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	156
AcsI	RAATTY	4 cut(s)	178, 352, 410, 481
AdeI	CACNNNGTG	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	178, 211, 344
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	2 cut(s)	55, 194
AluI	AGCT	2 cut(s)	55, 194
Alw21I	GWGCWC	1 cut(s)	57
AoxI	GGCC	4 cut(s)	30, 78, 129, 391
ApoI	RAATTY	4 cut(s)	178, 352, 410, 481
Asp700I	GAANNNNTTC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	316, 323
AsuHPI	GGTGA	2 cut(s)	145, 437
AsuII	TTCGAA	1 cut(s)	182
AvaII	GGWCC	2 cut(s)	316, 323
BanII	GRGCYC	2 cut(s)	57, 405
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	2 cut(s)	89, 461
BceAI	ACGGC	2 cut(s)	44, 71
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	2 cut(s)	248, 490
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	316, 323
BmgT120I	GGNCC	2 cut(s)	316, 323
BmrFI	CCNGG	1 cut(s)	77
BoxI	GACNNNNGTC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
Bpu10I	CCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	75, 319, 360
Bse1I	ACTGG	2 cut(s)	46, 326
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	3 cut(s)	75, 319, 360
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	2 cut(s)	46, 326
BshFI	GGCC	4 cut(s)	32, 80, 131, 393
BsiHKAI	GWGCWC	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	4 cut(s)	32, 80, 131, 393
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	57, 405
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	4 cut(s)	32, 80, 131, 393
BspCNI	CTCAG	1 cut(s)	139
BspT104I	TTCGAA	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	46, 326
BssECI	CCNNGG	3 cut(s)	75, 319, 360
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	2 cut(s)	319, 360
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	337
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	126, 236
BstEII	GGTNACC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	77
BstPAI	GACNNNNGTC	1 cut(s)	256
BstPI	GGTNACC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	75
BsuRI	GGCC	4 cut(s)	32, 80, 131, 393
BtgZI	GCGATG	2 cut(s)	67, 480
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	316, 323
CviAII	CATG	1 cut(s)	422
DdeI	CTNAG	2 cut(s)	126, 236
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
DraIII	CACNNNGTG	1 cut(s)	425
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	319, 360
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	57, 405
Eco47I	GGWCC	2 cut(s)	316, 323
Eco53kI	GAGCTC	1 cut(s)	55
Eco91I	GGTNACC	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	164
EcoRI	GAATTC	3 cut(s)	178, 352, 481
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	319, 360
EcoT38I	GRGCYC	2 cut(s)	57, 405
ErhI	CCWWGG	2 cut(s)	319, 360
FaeI	CATG	1 cut(s)	425
FaiI	YATR	4 cut(s)	288, 396, 407, 423
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	90
FriOI	GRGCYC	2 cut(s)	57, 405
FspBI	CTAG	2 cut(s)	248, 490
HaeIII	GGCC	4 cut(s)	32, 80, 131, 393
Hin1II	CATG	1 cut(s)	425
HincII	GTYRAC	2 cut(s)	64, 91
HindII	GTYRAC	2 cut(s)	64, 91
HphI	GGTGA	2 cut(s)	145, 437
Hpy166II	GTNNAC	3 cut(s)	64, 91, 419
Hpy188I	TCNGA	1 cut(s)	106
Hpy8I	GTNNAC	3 cut(s)	64, 91, 419
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	7 cut(s)	22, 43, 205, 234, 307, 338, 377
HpyCH4III	ACNGT	1 cut(s)	337
HpyF3I	CTNAG	2 cut(s)	126, 236
Hsp92II	CATG	1 cut(s)	425
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	119, 191
LpnPI	CCDG	6 cut(s)	59, 62, 89, 113, 339, 375
MaeI	CTAG	2 cut(s)	248, 490
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	3 cut(s)	294, 308, 392
MhlI	GDGCHC	2 cut(s)	57, 405
MluCI	AATT	6 cut(s)	178, 227, 352, 374, 410, 481
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	1 cut(s)	425
NspV	TTCGAA	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	32
PshAI	GACNNNNGTC	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	75
PspEI	GGTNACC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	316, 323
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	89
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	2 cut(s)	316, 323
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	57, 405
SetI	ASST	5 cut(s)	57, 69, 196, 245, 318
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	2 cut(s)	316, 323
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	6 cut(s)	178, 227, 352, 374, 410, 481
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	2 cut(s)	248, 490
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	2 cut(s)	319, 360
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	4 cut(s)	11, 90, 182, 294
TasI	AATT	6 cut(s)	178, 227, 352, 374, 410, 481
TspDTI	ATGAA	2 cut(s)	25, 444
VpaK11BI	GGWCC	2 cut(s)	316, 323
XapI	RAATTY	4 cut(s)	178, 352, 410, 481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	248, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.