Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000233.1

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

318673 .. 319415

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000233.1_g000074.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ctggaagaagggtcaggccataatgagcccataaaatttggatcacatggtgatgaaaaggctaaaaaggaagggaatggggtcgcggtacaaaacttccctgaagatgcaattgatgagtggcccacccctaagcagatccattctttttattttgtcagataccggacatatgatgatccaaagctaaaagccaaaattgagcaggctaatgtagaagttcagaagaagaatcaggctcgatctcgagtccttgaagcattaaatgcaaagagggtatatcgagtttctgatatggaacttgttagaattctccctagtgcagaagatgaggtcaacgtagcttgttttcatccctctgtaggaggtggccttgtttatggaactaaggtaaacaactggatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.24

Weight (kDa)

6.49

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	86
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	3 cut(s)	49, 133, 173
AcsI	RAATTY	2 cut(s)	35, 309
AcuI	CTGAAG	1 cut(s)	123
AdeI	CACNNNGTG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	257
AluBI	AGCT	2 cut(s)	187, 344
AluI	AGCT	2 cut(s)	187, 344
AlwI	GGATC	3 cut(s)	49, 133, 173
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	3 cut(s)	16, 122, 370
ApoI	RAATTY	2 cut(s)	35, 309
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	123
BmsI	GCATC	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	404
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	404
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	18, 124, 372
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	362
BsnI	GGCC	3 cut(s)	18, 124, 372
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	4 cut(s)	41, 138, 178, 242
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	3 cut(s)	18, 124, 372
BspFNI	CGCG	1 cut(s)	86
BspPI	GGATC	3 cut(s)	49, 133, 173
BsrI	ACTGG	1 cut(s)	404
BssMI	GATC	4 cut(s)	41, 138, 178, 242
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	132, 387
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	4 cut(s)	44, 141, 181, 245
BstMBI	GATC	4 cut(s)	41, 138, 178, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	18, 124, 372
BtsCI	GGATG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	1 cut(s)	47
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	2 cut(s)	132, 387
DpnI	GATC	4 cut(s)	43, 140, 180, 244
DpnII	GATC	4 cut(s)	41, 138, 178, 242
DraIII	CACNNNGTG	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	1 cut(s)	50
FaiI	YATR	8 cut(s)	21, 32, 48, 172, 174, 280, 296, 381
FatI	CATG	1 cut(s)	46
FauNDI	CATATG	1 cut(s)	172
FokI	GGATG	1 cut(s)	339
FriOI	GRGCYC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	18, 124, 372
HapII	CCGG	1 cut(s)	166
Hin1II	CATG	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	232, 249
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	337, 394
Hpy188I	TCNGA	3 cut(s)	161, 225, 292
Hpy188III	TCNNGA	1 cut(s)	246
Hpy8I	GTNNAC	2 cut(s)	337, 394
HpyAV	CCTTC	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	110, 269, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	132, 387
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	50
Kzo9I	GATC	4 cut(s)	41, 138, 178, 242
LpnPI	CCDG	5 cut(s)	114, 179, 191, 221, 385
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	339
MalI	GATC	4 cut(s)	43, 140, 180, 244
MboI	GATC	4 cut(s)	41, 138, 178, 242
MboII	GAAGA	5 cut(s)	17, 116, 238, 241, 338
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	4 cut(s)	35, 111, 198, 309
MlyI	GAGTC	1 cut(s)	258
MnlI	CCTC	4 cut(s)	267, 325, 359, 367
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	4 cut(s)	41, 138, 178, 242
NlaIII	CATG	1 cut(s)	50
PaeR7I	CTCGAG	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	263
Sau3AI	GATC	4 cut(s)	41, 138, 178, 242
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	6 cut(s)	189, 336, 342, 346, 370, 393
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	360
Sfr274I	CTCGAG	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	4 cut(s)	35, 111, 198, 309
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	318
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	3 cut(s)	241, 247, 283
TasI	AATT	4 cut(s)	35, 111, 198, 309
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	69, 341
XapI	RAATTY	2 cut(s)	35, 309
XhoI	CTCGAG	1 cut(s)	246
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.