RLG00000015068

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001499
Physical Location & Seq
Reverse (-)
61172400 .. 61174907
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015068

Sequence Viewer

Length: 549 bp
ATGGATTCGACAGCTTCACCGCCTCCCTATCGTCACCATTCTCGTTCGGAGTCTTCGTTCCTAACTAAATCGGCGTCGCGACTTGCAAATCTTCAGCTTCACTCCCTGGGTCTCATTCAATCACCTTTACCTTCGTCTCGCAAATCTTCAGCTTCGCTCCCTCTGCACGAGCTACTGCTACTCTCGCCTTCGCCCAATCCAAAAATGTCCAAGACCCGTCTCGTCTATCAGTTTGAAATGCCCGATGAGTTTAGTCCCTTATGTGGCCACCCCAACTTCATCTACAAACTATTGTATCCAACATCACTGAGCTTCATGCAAAGTTCACGTTATGGAAATGAAAGTTCTATATTAACCGCCACTGAAGGTTGCCAGGTCAAGAATCCTACAGCTCGCATTGAACACGAAGCCAGTCACTCCAAAATTGGTGAAGACCAGCAATTTTACTTTCAACAAAGGGGAATAGACTATGAGAAAGCCATGGCTGCCTTGATATCTCGTTTTTGTCAGGCAGTATTCAATAAGCTACCTGACGAGTTTGGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

183

Amino Acids

20.41

Weight (kDa)

8.43

Isoelectric Point (pI)

62.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUFBD_core PF01458 125 - 168 1.3e-08 SUF system FeS cluster assembly, SufBD core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 79
AciI CCGC 2 cut(s) 20, 357
AcoI YGGCCR 1 cut(s) 265
AcuI CTGAAG 3 cut(s) 77, 132, 384
AcyI GRCGYC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 5 cut(s) 119, 236, 401, 452, 520
AjnI CCWGG 2 cut(s) 105, 372
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 7 cut(s) 14, 97, 152, 172, 312, 392, 526
AluI AGCT 7 cut(s) 14, 97, 152, 172, 312, 392, 526
Alw26I GTCTC 3 cut(s) 116, 141, 224
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 485
AsuHPI GGTGA 4 cut(s) 9, 26, 114, 440
BaeI ACNNNNGTAYC 2 cut(s) 278, 311
BalI TGGCCA 1 cut(s) 267
BauI CACGAG 1 cut(s) 167
BbsI GAAGAC 2 cut(s) 45, 438
BbvI GCAGC 1 cut(s) 472
BciT130I CCWGG 2 cut(s) 107, 374
BciVI GTATCC 1 cut(s) 306
BcoDI GTCTC 3 cut(s) 116, 141, 224
BfmI CTRYAG 1 cut(s) 387
BfuI GTATCC 1 cut(s) 306
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
Bme1390I CCNGG 2 cut(s) 107, 374
BmrFI CCNGG 2 cut(s) 107, 374
BpiI GAAGAC 2 cut(s) 45, 438
BsaHI GRCGYC 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 3 cut(s) 105, 106, 480
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 411
BseBI CCWGG 2 cut(s) 107, 374
BseDI CCNNGG 3 cut(s) 105, 106, 480
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 411
BseXI GCAGC 1 cut(s) 472
BsgI GTGCAG 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 267
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 3 cut(s) 116, 141, 224
BsmBI CGTCTC 2 cut(s) 141, 224
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 1 cut(s) 267
Bso31I GGTCTC 1 cut(s) 116
Bsp19I CCATGG 1 cut(s) 480
Bsp68I TCGCGA 1 cut(s) 79
BspACI CCGC 2 cut(s) 20, 357
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 300
BspFNI CGCG 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 3 cut(s) 105, 106, 480
BssNI GRCGYC 1 cut(s) 74
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 107, 374
BstACI GRCGYC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 2 cut(s) 308, 546
BstDSI CCRYGG 1 cut(s) 480
BstFNI CGCG 1 cut(s) 79
BstMAI GTCTC 3 cut(s) 116, 141, 224
BstMWI GCNNNNNNNGC 3 cut(s) 163, 184, 485
BstNI CCWGG 2 cut(s) 107, 374
BstSCI CCNGG 2 cut(s) 105, 372
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 2 cut(s) 45, 438
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 480
BtsIMutI CAGTG 2 cut(s) 305, 360
BtuMI TCGCGA 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 394
CseI GACGC 1 cut(s) 63
CviAII CATG 2 cut(s) 316, 481
DdeI CTNAG 2 cut(s) 308, 546
EaeI YGGCCR 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 495
Eco57I CTGAAG 3 cut(s) 77, 132, 384
EcoRII CCWGG 2 cut(s) 105, 372
EcoRV GATATC 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
Esp3I CGTCTC 2 cut(s) 141, 224
FaeI CATG 2 cut(s) 319, 484
FaiI YATR 6 cut(s) 262, 317, 333, 350, 471, 482
FaqI GGGAC 1 cut(s) 240
FatI CATG 2 cut(s) 315, 480
Fnu4HI GCNGC 1 cut(s) 486
Fsp4HI GCNGC 1 cut(s) 486
GluI GCNGC 1 cut(s) 486
HaeIII GGCC 1 cut(s) 267
HgaI GACGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 2 cut(s) 319, 484
HinfI GANTC 3 cut(s) 5, 50, 382
HphI GGTGA 4 cut(s) 9, 26, 114, 440
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 78, 379
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 141, 198, 359
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 3 cut(s) 86, 166, 319
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 184, 485
HpyF3I CTNAG 2 cut(s) 308, 546
HpySE526I ACGT 1 cut(s) 328
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 2 cut(s) 319, 484
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 8 cut(s) 92, 119, 359, 386, 424, 449, 494, 543
Lsp1109I GCAGC 1 cut(s) 472
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 2 cut(s) 32, 413
MboII GAAGA 4 cut(s) 45, 83, 138, 443
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 2 cut(s) 423, 440
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 2 cut(s) 33, 171
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 267
MspR9I CCNGG 2 cut(s) 107, 374
MvaI CCWGG 2 cut(s) 107, 374
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 3 cut(s) 163, 184, 485
NcoI CCATGG 1 cut(s) 480
NlaIII CATG 2 cut(s) 319, 484
NmuCI GTSAC 2 cut(s) 32, 413
NruI TCGCGA 1 cut(s) 79
PasI CCCWGGG 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PfeI GAWTC 2 cut(s) 5, 382
PkrI GCNGC 1 cut(s) 487
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 105, 372
PspGI CCWGG 2 cut(s) 105, 372
RruI TCGCGA 1 cut(s) 79
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 1 cut(s) 486
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 107, 374
SfcI CTRYAG 1 cut(s) 387
Sse9I AATT 2 cut(s) 423, 440
SsiI CCGC 2 cut(s) 20, 357
StyD4I CCNGG 2 cut(s) 105, 372
StyI CCWWGG 1 cut(s) 480
TaiI ACGT 1 cut(s) 331
TaqI TCGA 1 cut(s) 8
TasI AATT 2 cut(s) 423, 440
TfiI GAWTC 2 cut(s) 5, 382
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 2 cut(s) 312, 367
TseFI GTSAC 2 cut(s) 32, 413
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 2 cut(s) 32, 413
TspDTI ATGAA 3 cut(s) 268, 304, 354
TspRI CASTG 2 cut(s) 312, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.