Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

2674579 .. 2676244

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAATAACCGTGACCCTATATTAAATTATATACCCAAGATGAGAAGGTCATCGCAAAATCTATTATACAAGGCAAAGAATACAAGAAGTAGAGTTATTTCAAAGGGTATATCAGCTGGGAATTCAAGGAACTGTTATCGGGGCCTTGTTCAGGTTTTTTCACAGGCAGAGAATGCTCGAAATTCCTCCCAATGTGATTCAATGCTTATTGGAGATAATGCAGCTGCCAACACCTACCCATACATTGAGGTCAAGAATCCCACAGCTCGCATTGAACACGAAGTCAATACCTCCAAAATTGGTGAAGACCATCTATATTACTTTCACCAAAGGGGAATAGACTATGAGAAAGCCATGGCTGCTATGATATCTGTTTTTGCCGGGCAGTATTCAATGAGTTTCCTGATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0030003 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046916 GO:0048583 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0098771 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

137

Amino Acids

15.61

Weight (kDa)

9.58

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUFBD_core	PF01458	23 - 124	3.3e-30	SUF system FeS cluster assembly, SufBD core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	121, 181
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	5 cut(s)	102, 126, 201, 275, 393
AluBI	AGCT	3 cut(s)	116, 224, 266
AluI	AGCT	3 cut(s)	116, 224, 266
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	3 cut(s)	221, 224, 359
ApoI	RAATTY	2 cut(s)	121, 181
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	2 cut(s)	314, 317
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	211, 233, 346
BccI	CCATC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	382
BisI	GCNGC	3 cut(s)	222, 225, 360
BlsI	GCNGC	3 cut(s)	223, 226, 361
Bme1390I	CCNGG	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	211, 233, 346
BseYI	CCCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	144
Bsp19I	CCATGG	1 cut(s)	354
BspANI	GGCC	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	11, 134
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	354
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 359
BstSCI	CCNGG	1 cut(s)	380
BstV1I	GCAGC	3 cut(s)	211, 233, 346
BstV2I	GAAGAC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	6 cut(s)	116, 144, 224, 266, 353, 359
CviKI_1	RGCY	6 cut(s)	116, 144, 224, 266, 353, 359
Eco130I	CCWWGG	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	358
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	222, 225, 360
Fsp4HI	GCNGC	3 cut(s)	222, 225, 360
GluI	GCNGC	3 cut(s)	222, 225, 360
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	381
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	2 cut(s)	197, 256
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	2 cut(s)	314, 317
Hpy188III	TCNNGA	2 cut(s)	253, 403
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	2 cut(s)	11, 134
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 359
Hsp92II	CATG	1 cut(s)	358
LpnPI	CCDG	4 cut(s)	102, 137, 149, 394
Lsp1109I	GCAGC	3 cut(s)	211, 233, 346
MaeIII	GTNAC	1 cut(s)	11
MboII	GAAGA	1 cut(s)	317
MluCI	AATT	4 cut(s)	25, 121, 181, 297
MnlI	CCTC	4 cut(s)	196, 241, 301, 402
MseI	TTAA	1 cut(s)	23
MspA1I	CMGCKG	2 cut(s)	116, 224
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	178
MwoI	GCNNNNNNNGC	2 cut(s)	173, 359
NciI	CCSGG	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	354
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	11
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	197, 256
PkrI	GCNGC	3 cut(s)	223, 226, 361
PspFI	CCCAGC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	142
PvuII	CAGCTG	2 cut(s)	116, 224
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	3 cut(s)	222, 225, 360
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	382
SetI	ASST	9 cut(s)	50, 118, 156, 226, 236, 252, 268, 293, 413
Sse9I	AATT	4 cut(s)	25, 121, 181, 297
StyD4I	CCNGG	1 cut(s)	380
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	11, 134
TaqI	TCGA	1 cut(s)	178
TasI	AATT	4 cut(s)	25, 121, 181, 297
TfiI	GAWTC	2 cut(s)	197, 256
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	3 cut(s)	221, 224, 359
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	2 cut(s)	121, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.