Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

27494503 .. 27496167

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGGGTCGAAGATTTGGGATTTGAGAAGGTCCAAGGACCAGTTGGGACTGTTAGTGAAGGAGAGAATTCCGCCAAGGAAAATGGGAAACTGGAAGAAGGGTCAGGGCATAATGAGCCCATAAAATTTGGATCACATGGTGATGAAATGGCTAAAAAGGAAGCGAATGGGGTTGCGGTACAAAACTTCCCTCAAGATGCAGTTGATGAGTGGCCTGCCCCTAAGCAGATCCATTCTTTTCATTTCGTCAGGTACCGGACATTTGATGATCCAAAGTTAAAAGCCAAAATTGAGCTGGCTAATGTAGAAGTTCAGAAGAAGAATCAGGCTCGATCTCAAGTCCTGGAAGCATTAAATGCAAAAGAGGTCCAAGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.93

Weight (kDa)

5.24

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	252
AciI	CCGC	2 cut(s)	72, 176
AclWI	GGATC	3 cut(s)	139, 223, 263
AcsI	RAATTY	2 cut(s)	67, 125
AdeI	CACNNNGTG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	180, 254
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
AlwI	GGATC	3 cut(s)	139, 223, 263
AoxI	GGCC	1 cut(s)	212
ApoI	RAATTY	2 cut(s)	67, 125
Asp718I	GGTACC	1 cut(s)	252
AspS9I	GGNCC	3 cut(s)	31, 38, 367
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	3 cut(s)	31, 38, 367
BanI	GGYRCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	344
BglII	AGATCT	1 cut(s)	375
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	3 cut(s)	31, 38, 367
BmgT120I	GGNCC	3 cut(s)	31, 38, 367
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	177, 321
BsaJI	CCNNGG	2 cut(s)	34, 75
BsaWI	WCCGGW	1 cut(s)	255
Bse1I	ACTGG	2 cut(s)	41, 96
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	34, 75
BseNI	ACTGG	2 cut(s)	41, 96
BshFI	GGCC	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	5 cut(s)	131, 228, 268, 332, 375
BspACI	CCGC	2 cut(s)	72, 176
BspANI	GGCC	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	3 cut(s)	139, 223, 263
BspT107I	GGYRCC	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	41, 96
BssECI	CCNNGG	2 cut(s)	34, 75
BssMI	GATC	5 cut(s)	131, 228, 268, 332, 375
BssT1I	CCWWGG	2 cut(s)	34, 75
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	216, 297
BstDEI	CTNAG	1 cut(s)	222
BstKTI	GATC	5 cut(s)	134, 231, 271, 335, 378
BstMBI	GATC	5 cut(s)	131, 228, 268, 332, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 356
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstX2I	RGATCY	2 cut(s)	228, 375
BstYI	RGATCY	2 cut(s)	228, 375
BsuRI	GGCC	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	216, 297
Cfr13I	GGNCC	3 cut(s)	31, 38, 367
Csp6I	GTAC	2 cut(s)	179, 253
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	7 cut(s)	118, 152, 214, 284, 295, 299, 329
CviKI_1	RGCY	7 cut(s)	118, 152, 214, 284, 295, 299, 329
CviQI	GTAC	2 cut(s)	179, 253
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	5 cut(s)	133, 230, 270, 334, 377
DpnII	GATC	5 cut(s)	131, 228, 268, 332, 375
DraIII	CACNNNGTG	1 cut(s)	140
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	34, 75
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	3 cut(s)	31, 38, 367
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	34, 75
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	2 cut(s)	34, 75
FaeI	CATG	1 cut(s)	140
FaiI	YATR	3 cut(s)	111, 122, 138
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	1 cut(s)	256
Hin1II	CATG	1 cut(s)	140
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	315, 380
Hpy188III	TCNNGA	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	22, 53, 92
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	200, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 356
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	140
KpnI	GGTACC	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	131, 228, 268, 332, 375
LweI	GCATC	1 cut(s)	187
MalI	GATC	5 cut(s)	133, 230, 270, 334, 377
MboI	GATC	5 cut(s)	131, 228, 268, 332, 375
MboII	GAAGA	4 cut(s)	23, 107, 328, 331
MflI	RGATCY	2 cut(s)	228, 375
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	67, 125, 288
MnlI	CCTC	2 cut(s)	201, 358
MseI	TTAA	2 cut(s)	278, 353
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	115, 356
NdeII	GATC	5 cut(s)	131, 228, 268, 332, 375
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	3 cut(s)	31, 38, 367
PsuI	RGATCY	2 cut(s)	228, 375
RsaI	GTAC	2 cut(s)	180, 254
RsaNI	GTAC	2 cut(s)	179, 253
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	278, 353
Sau3AI	GATC	5 cut(s)	131, 228, 268, 332, 375
Sau96I	GGNCC	3 cut(s)	31, 38, 367
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	4 cut(s)	33, 254, 297, 369
SfaNI	GCATC	1 cut(s)	187
SinI	GGWCC	3 cut(s)	31, 38, 367
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	192, 336
SmoI	CTYRAG	2 cut(s)	192, 336
Sse9I	AATT	3 cut(s)	67, 125, 288
SsiI	CCGC	2 cut(s)	72, 176
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	2 cut(s)	34, 75
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	9, 331
TasI	AATT	3 cut(s)	67, 125, 288
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	278, 353
Tru9I	TTAA	2 cut(s)	278, 353
TspDTI	ATGAA	2 cut(s)	159, 230
VpaK11BI	GGWCC	3 cut(s)	31, 38, 367
XapI	RAATTY	2 cut(s)	67, 125
XcmI	CCANNNNNNNNNTGG	2 cut(s)	41, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.