Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Reverse (-)

53520492 .. 53524669

Gene Structure 4178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030026

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGATATCAAAGATTTGGGATTTGAGAAGGTCCAAGGACCAGTTGGGACTGTCACTAAAGGAGAGAATTCCGTCAAGGAAAATGGGAAACTGGAAGAAGGGTCAGGCCATAATGAACCCATAAAATTTGGATCACATGGTGATGAAATGGCTAAAAAGGAAGGGAATGGGGTCACGGTACAAAACTACCCTCAAGGTGCAATTGATGAGTGGCCTGCCCCTAAGCAGATCCATTCTTTTTATTTTGTCAGGTACCAGACATATGATGATCCAAAGCTAAAAGCCAAAATTGAGCAGGCTAATGTAGAAGTTCAGAAGAAGAATCAAGCTCGATCTCGAGTCCTTGAAGCATTAAATGCAAAGAGGGTCAAGGATCCTACAGCTCGCATTGAACACAAAGCCAGTACCTCCAAAATTGGTGAAGACCAGCAATTTTACTTTCAACAAAGGGGAATAGACTATGAGAAAGCCATGGCTGGCATGATATCTCGTTTTTGCCAGGCAGTATTCAATGAGCTTCCTGACGAGTTTGGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.14

Weight (kDa)

6.45

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUFBD_core	PF01458	125 - 163	1.1e-07	SUF system FeS cluster assembly, SufBD core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	252
AclWI	GGATC	5 cut(s)	139, 223, 263, 368, 381
AcsI	RAATTY	2 cut(s)	67, 125
AdeI	CACNNNGTG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	180, 254, 406
AgsI	TTSAA	4 cut(s)	347, 392, 443, 511
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	4 cut(s)	277, 329, 383, 517
AluI	AGCT	4 cut(s)	277, 329, 383, 517
AlwI	GGATC	5 cut(s)	139, 223, 263, 368, 381
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	106, 212
ApoI	RAATTY	2 cut(s)	67, 125
Asp718I	GGTACC	1 cut(s)	252
AspS9I	GGNCC	2 cut(s)	31, 38
AsuHPI	GGTGA	2 cut(s)	152, 431
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	31, 38
BamHI	GGATCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	378
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	2 cut(s)	31, 38
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	31, 38
BmiI	GGNNCC	2 cut(s)	254, 375
BmrFI	CCNGG	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	34, 471
Bse1I	ACTGG	3 cut(s)	41, 96, 402
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	34, 471
BseNI	ACTGG	3 cut(s)	41, 96, 402
BshFI	GGCC	2 cut(s)	108, 214
BshNI	GGYRCC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	108, 214
BsoBI	CYCGRG	1 cut(s)	336
Bsp143I	GATC	5 cut(s)	131, 228, 268, 332, 373
Bsp19I	CCATGG	1 cut(s)	471
BspANI	GGCC	2 cut(s)	108, 214
BspLI	GGNNCC	2 cut(s)	254, 375
BspPI	GGATC	5 cut(s)	139, 223, 263, 368, 381
BspT107I	GGYRCC	1 cut(s)	252
BsrI	ACTGG	3 cut(s)	41, 96, 402
BssECI	CCNNGG	2 cut(s)	34, 471
BssMI	GATC	5 cut(s)	131, 228, 268, 332, 373
BssT1I	CCWWGG	2 cut(s)	34, 471
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	52, 178
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	216, 297, 385, 478
BstDEI	CTNAG	2 cut(s)	222, 537
BstDSI	CCRYGG	1 cut(s)	471
BstKTI	GATC	5 cut(s)	134, 231, 271, 335, 376
BstMBI	GATC	5 cut(s)	131, 228, 268, 332, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	2 cut(s)	228, 373
BstYI	RGATCY	2 cut(s)	228, 373
BsuRI	GGCC	2 cut(s)	108, 214
BtgI	CCRYGG	1 cut(s)	471
Cac8I	GCNNGC	4 cut(s)	216, 297, 385, 478
Cfr13I	GGNCC	2 cut(s)	31, 38
Csp6I	GTAC	3 cut(s)	179, 253, 405
CviAII	CATG	3 cut(s)	137, 472, 481
CviQI	GTAC	3 cut(s)	179, 253, 405
DdeI	CTNAG	2 cut(s)	222, 537
DpnI	GATC	5 cut(s)	133, 230, 270, 334, 375
DpnII	GATC	5 cut(s)	131, 228, 268, 332, 373
DraIII	CACNNNGTG	1 cut(s)	140
Eco130I	CCWWGG	2 cut(s)	34, 471
Eco32I	GATATC	2 cut(s)	7, 486
Eco47I	GGWCC	2 cut(s)	31, 38
Eco88I	CYCGRG	1 cut(s)	336
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	498
EcoRV	GATATC	2 cut(s)	7, 486
EcoT14I	CCWWGG	2 cut(s)	34, 471
ErhI	CCWWGG	2 cut(s)	34, 471
FaeI	CATG	3 cut(s)	140, 475, 484
FaiI	YATR	8 cut(s)	111, 122, 138, 262, 264, 462, 473, 482
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	3 cut(s)	136, 471, 480
FauNDI	CATATG	1 cut(s)	262
HaeIII	GGCC	2 cut(s)	108, 214
Hin1II	CATG	3 cut(s)	140, 475, 484
HinfI	GANTC	2 cut(s)	322, 339
HphI	GGTGA	2 cut(s)	152, 431
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	2 cut(s)	336, 521
HpyAV	CCTTC	3 cut(s)	22, 92, 155
HpyCH4III	ACNGT	2 cut(s)	52, 178
HpyCH4V	TGCA	2 cut(s)	200, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	222, 537
Hsp92II	CATG	3 cut(s)	140, 475, 484
KpnI	GGTACC	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	131, 228, 268, 332, 373
MaeIII	GTNAC	2 cut(s)	52, 172
MalI	GATC	5 cut(s)	133, 230, 270, 334, 375
MboI	GATC	5 cut(s)	131, 228, 268, 332, 373
MboII	GAAGA	4 cut(s)	107, 328, 331, 434
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	2 cut(s)	228, 373
MluCI	AATT	6 cut(s)	67, 125, 201, 288, 414, 431
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	201, 357, 418
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	500
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	1 cut(s)	356
NcoI	CCATGG	1 cut(s)	471
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	5 cut(s)	131, 228, 268, 332, 373
NlaIII	CATG	3 cut(s)	140, 475, 484
NlaIV	GGNNCC	2 cut(s)	254, 375
NmuCI	GTSAC	2 cut(s)	52, 172
PaeR7I	CTCGAG	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	2 cut(s)	254, 375
PspPI	GGNCC	2 cut(s)	31, 38
PsuI	RGATCY	2 cut(s)	228, 373
RsaI	GTAC	3 cut(s)	180, 254, 406
RsaNI	GTAC	3 cut(s)	179, 253, 405
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	353
Sau3AI	GATC	5 cut(s)	131, 228, 268, 332, 373
Sau96I	GGNCC	2 cut(s)	31, 38
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	500
SetI	ASST	8 cut(s)	33, 199, 254, 279, 331, 385, 410, 519
SfcI	CTRYAG	1 cut(s)	378
Sfr274I	CTCGAG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	31, 38
SlaI	CTCGAG	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	192, 336
SmoI	CTYRAG	2 cut(s)	192, 336
Sse9I	AATT	6 cut(s)	67, 125, 201, 288, 414, 431
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	2 cut(s)	34, 471
TaaI	ACNGT	2 cut(s)	52, 178
TaqI	TCGA	2 cut(s)	331, 337
TasI	AATT	6 cut(s)	67, 125, 201, 288, 414, 431
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseFI	GTSAC	2 cut(s)	52, 172
Tsp45I	GTSAC	2 cut(s)	52, 172
TspDTI	ATGAA	2 cut(s)	129, 159
TspGWI	ACGGA	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	31, 38
XapI	RAATTY	2 cut(s)	67, 125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.