Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001499

Physical Location & Seq

Genomic Coordinates Forward (+)

39627025 .. 39635949

Gene Structure 8925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG310200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGACCAAGGACCAGTTGGGACTGTCATTGAAGGAGAGAATTCCACCAAGGAAAATGAGAAACTGGAAGAAGGGTCAGGCCATAATGAGCCCATAAAATTTGGATCACATGGTGATGAAATGGCTAAAAAGGAAGGGAATGGGGTCGCGGTACAAAACTTCCCTCAAGATGCAGTTGATGAGTGGCCTGCCCCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0010155 GO:0012505 GO:0016020 GO:0030054 GO:0031984 GO:0032879 GO:0034762 GO:0034765 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0051049 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:0098827 GO:1901363 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

66

Amino Acids

7.09

Weight (kDa)

4.47

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04770 AT5G44316
fragaria_vesca	FvH4_3g02300
malus_domestica	MD05G1344000.v1.1
prunus_persica	Prupe.4G022500_v2.0.a1
pyrus_communis	pycom05g31340 pycom10g27080
rosa_chinensis	RchiOBHm_Chr1g0332851 RchiOBHm_Chr4g0413651 RchiOBHm_Chr5g0003411 RchiOBHm_Chr5g0003431 RchiOBHm_Chr5g0003451 RchiOBHm_Chr5g0003481 RchiOBHm_Chr6g0297111
rosa_laevigata	RLG00000015068 RLG00000018882 RLG00000025700 RLG00000030026 RLG00000031138 RLG00000033068
rosa_multiflora	Rmu_co8382415.1_g000001 Rmu_sc0000040.1_g000004 Rmu_sc0000538.1_g000047 Rmu_sc0001292.1_g000023 Rmu_sc0001524.1_g000007 Rmu_sc0002077.1_g000005 Rmu_sc0003162.1_g000004 Rmu_sc0003549.1_g000004 Rmu_sc0009017.1_g000003 Rmu_sc0009227.1_g000001 Rmu_sc0009787.1_g000016 Rmu_sc0014348.1_g000012 Rmu_sc0016365.1_g000001 Rmu_ssc0000233.1_g000074
rosa_roxburghii	Rroxscaffold_1G00072580 Rroxscaffold_3G00223750 Rroxscaffold_4G00296210 Rroxscaffold_4G00307190 Rroxscaffold_4G00314590
rosa_rugosa	Rorug04G0403200.1 Rorug04G0403400.1
rosa_samantha	Rh4DG442000 Rh5AG029800 Rh5BG232300 Rh5BG301200 Rh5CG032000 Rh5DG029700 Rh5DG310200 Rh7CG133000
rosa_wichuraiana	Rw5G002790 Rw5G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	149
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	40, 98
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	32
AlwI	GGATC	1 cut(s)	112
AoxI	GGCC	2 cut(s)	79, 185
ApoI	RAATTY	2 cut(s)	40, 98
AspS9I	GGNCC	2 cut(s)	4, 11
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	4, 11
BanII	GRGCYC	1 cut(s)	93
Bme18I	GGWCC	2 cut(s)	4, 11
BmgT120I	GGNCC	2 cut(s)	4, 11
BmsI	GCATC	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	7, 48
Bse1I	ACTGG	2 cut(s)	14, 69
BseDI	CCNNGG	2 cut(s)	7, 48
BseNI	ACTGG	2 cut(s)	14, 69
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	2 cut(s)	81, 187
BslFI	GGGAC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	81, 187
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	104
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	2 cut(s)	81, 187
BspFNI	CGCG	1 cut(s)	149
BspPI	GGATC	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	14, 69
BssECI	CCNNGG	2 cut(s)	7, 48
BssMI	GATC	1 cut(s)	104
BssT1I	CCWWGG	2 cut(s)	7, 48
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	104
BstUI	CGCG	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	81, 187
Cac8I	GCNNGC	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	4, 11
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	4 cut(s)	81, 91, 125, 187
CviKI_1	RGCY	4 cut(s)	81, 91, 125, 187
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
DraIII	CACNNNGTG	1 cut(s)	113
Eco130I	CCWWGG	2 cut(s)	7, 48
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	2 cut(s)	4, 11
EcoRI	GAATTC	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	7, 48
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	7, 48
FaeI	CATG	1 cut(s)	113
FaiI	YATR	3 cut(s)	84, 95, 111
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	81, 187
Hin1II	CATG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	125
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	26, 65, 128
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	104
LpnPI	CCDG	3 cut(s)	27, 50, 63
LweI	GCATC	1 cut(s)	160
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	2 cut(s)	40, 98
MnlI	CCTC	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	149
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	4, 11
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	2 cut(s)	4, 11
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	160
SgeI	CNNG	8 cut(s)	20, 26, 61, 77, 90, 122, 160, 179
SinI	GGWCC	2 cut(s)	4, 11
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	40, 98
SsiI	CCGC	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	7, 48
TaaI	ACNGT	1 cut(s)	25
TasI	AATT	2 cut(s)	40, 98
TspDTI	ATGAA	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	4, 11
XapI	RAATTY	2 cut(s)	40, 98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.