Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Forward (+)

21395944 .. 21399419

Gene Structure 3476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGTCGAAGAAACTTAGCTCGAACTCCATGGATGATGTTGATCGATTGTTTCAGTGTTTCAAGTGTGGGATTTCTCCGCCTGCTTCTGCTATGAGAGAAAAGAAACGGAGCAAGAAAATGTTGAATTCAGAGTATGACTCTCCTGTGACCTGTAAGAAGTTGCAGCTAAGTTCTTTGTCTAGATTATCTGGAAAAAGAGGAGAAAGAAATCAGATTGATGGAAGTGTCTCTGTAGATTCTGTTTCTGGTTCCAGGGATGTGAAAAAGAGCGTTGGGAGGCAGTTTTCACCCATTGTATTTTACGGATCTCCAAATGGCGTTCCTCCGAAAAAACCGTTGAGTTTATTAAGGCTCTTGCGTGAGATTCGTATTGATCTTAGTGAAGAAAGGAAAGCAATCTCCAGGAAAGGAGTTTGGGCTACATTTCCTCGGCAAGAGGAAGCGATTAAGTTTGAAAAAAGGCATGACAATGTGCGGATTTTTAGTTATCAAGATCATTTTAGTGGTCAGAGAAGGTTTCTGGTTTCATCATATGAAGAATTCTGGAAGAGATACCTATCTATGGATCCAAGGCACCGACACCATTATGAAGTGATTCAAGAGGGATTGCCATGCCATATGTACTTTGATTTGGAGTTCAATCAGAAAGAAAATGAAGGAAAAAATGTAGATGAAATGGTTGATATCTTGATATCAGTCATTCTGGAAGCCTTGCGTGAGAAATATGCTATCGAAGGACAAGAGGACTGGATAGTAGAGCTTGATTCCTCAACTAAAGATAAGTTCTCTCGTCATGTAATTGTAATCATTCCAAAGGTTGCCTTTAAGGATAACTCACACGTTGGTGCTTTTGTTGGAGAGCTATGCTCACGGATAGTAAATGCAAAGGAAACAGATGAAAGGTTGCGCAAGCTGTTTGTTCACAAAGAGGCTAATGATTCGGCATCGCTACTTTTCGTGGATACTGCTGTTTACTCTAGAAACCGTTGCTTCCGTCTTGCACTATCATCAAAAGCTGGAAAGACATCAGTTCTTTTACCTACAGGACGATTCAAATGTAAGGATATGGGTGAACGAGATGTTTTCATGACATCCTTAATCTGCAACGTAGAATCAGATTGTGAGAAGCTTCTGGTTTGCAAGATGGAATCAGACTGTATGAAGACACTGTGCTTTGACACAGAGGTGAACAGTAACAATCTTGTAAGAGACCAGAATGCTCAGAAATTTCAACTGAATGCTAGCACAAGTGACATGTCAACATCATATTTCGGGGGCAAGTCCCCGTTCCCGCAACTGGACCAATTCATAGAATCCACTGCTTCCACGGGGAATGTCCCAGGTAAGATACGCTGCTGGTACTGGTTCTCAGAAGATGGCCTGATTGTGTACAGTATGTTAAGAAACAGATATTGCGAACGGATTGGCAGGGAACATAAAAGCAATCATGGTACCATCTGCTCTCAACCCATTTATGATATACGAGTATCGAGTATGTTATGTAATCTCTGCACCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

506

Amino Acids

58.07

Weight (kDa)

8.92

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	908
Acc65I	GGTACC	1 cut(s)	1451
AccB1I	GGYRCC	2 cut(s)	573, 1451
AciI	CCGC	3 cut(s)	77, 475, 1292
AclWI	GGATC	3 cut(s)	313, 560, 573
AcsI	RAATTY	3 cut(s)	124, 539, 1226
AfaI	GTAC	4 cut(s)	623, 1361, 1391, 1453
AfiI	CCNNNNNNNGG	2 cut(s)	562, 1297
AflIII	ACRYGT	2 cut(s)	838, 1254
AgsI	TTSAA	7 cut(s)	61, 124, 455, 599, 640, 1054, 1232
AjnI	CCWGG	3 cut(s)	251, 401, 1339
AleI	CACNNNNGTG	2 cut(s)	843, 1184
AluBI	AGCT	7 cut(s)	18, 166, 760, 862, 913, 1016, 1129
AluI	AGCT	7 cut(s)	18, 166, 760, 862, 913, 1016, 1129
Alw26I	GTCTC	2 cut(s)	232, 1203
AlwI	GGATC	3 cut(s)	313, 560, 573
AoxI	GGCC	1 cut(s)	1378
ApeKI	GCWGC	2 cut(s)	163, 1353
ApoI	RAATTY	3 cut(s)	124, 539, 1226
Asp700I	GAANNNNTTC	1 cut(s)	594
Asp718I	GGTACC	1 cut(s)	1451
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	1 cut(s)	1300
AsuHPI	GGTGA	3 cut(s)	279, 1082, 1198
AsuNHI	GCTAGC	1 cut(s)	1241
AvaII	GGWCC	1 cut(s)	1300
BaeI	ACNNNNGTAYC	2 cut(s)	954, 987
BamHI	GGATCC	1 cut(s)	565
BanI	GGYRCC	2 cut(s)	573, 1451
BbsI	GAAGAC	1 cut(s)	1169
BbvI	GCAGC	2 cut(s)	175, 1340
BccI	CCATC	4 cut(s)	212, 1138, 1370, 1463
BciT130I	CCWGG	3 cut(s)	253, 403, 1341
BciVI	GTATCC	1 cut(s)	955
BcoDI	GTCTC	2 cut(s)	232, 1203
BfaI	CTAG	3 cut(s)	180, 978, 1242
BfmI	CTRYAG	2 cut(s)	231, 1041
BfuI	GTATCC	1 cut(s)	955
BisI	GCNGC	2 cut(s)	164, 1354
BlsI	GCNGC	2 cut(s)	165, 1355
Bme1390I	CCNGG	3 cut(s)	253, 403, 1341
Bme18I	GGWCC	1 cut(s)	1300
BmgT120I	GGNCC	1 cut(s)	1300
BmiI	GGNNCC	4 cut(s)	250, 567, 575, 1453
BmrFI	CCNGG	3 cut(s)	253, 403, 1341
BmsI	GCATC	1 cut(s)	953
BmtI	GCTAGC	1 cut(s)	1245
BpiI	GAAGAC	1 cut(s)	1169
BplI	GAGNNNNNCTC	4 cut(s)	122, 154, 851, 883
BpmI	CTGGAG	1 cut(s)	385
Bsa29I	ATCGAT	1 cut(s)	43
BsaBI	GATNNNNATC	2 cut(s)	39, 556
BsaI	GGTCTC	1 cut(s)	1203
BsaJI	CCNNGG	6 cut(s)	27, 252, 428, 569, 1326, 1339
Bsc4I	CCNNNNNNNGG	2 cut(s)	562, 1297
Bse1I	ACTGG	3 cut(s)	752, 1302, 1367
Bse8I	GATNNNNATC	2 cut(s)	39, 556
BseBI	CCWGG	3 cut(s)	253, 403, 1341
BseCI	ATCGAT	1 cut(s)	43
BseDI	CCNNGG	6 cut(s)	27, 252, 428, 569, 1326, 1339
BseGI	GGATG	3 cut(s)	37, 262, 1091
BseJI	GATNNNNATC	2 cut(s)	39, 556
BseLI	CCNNNNNNNGG	2 cut(s)	562, 1297
BseMII	CTCAG	2 cut(s)	1235, 1383
BseNI	ACTGG	3 cut(s)	752, 1302, 1367
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	175, 1340
BsgI	GTGCAG	1 cut(s)	1495
BshFI	GGCC	1 cut(s)	1380
BshNI	GGYRCC	2 cut(s)	573, 1451
BshVI	ATCGAT	1 cut(s)	43
BslFI	GGGAC	2 cut(s)	1267, 1322
BslI	CCNNNNNNNGG	2 cut(s)	562, 1297
BsmAI	GTCTC	2 cut(s)	232, 1203
BsmFI	GGGAC	2 cut(s)	1267, 1322
BsmI	GAATGC	2 cut(s)	1222, 1243
BsnI	GGCC	1 cut(s)	1380
Bso31I	GGTCTC	1 cut(s)	1203
Bsp1407I	TGTACA	1 cut(s)	1389
Bsp143I	GATC	5 cut(s)	40, 305, 373, 493, 565
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	77, 475, 1292
BspANI	GGCC	1 cut(s)	1380
BspCNI	CTCAG	2 cut(s)	1234, 1382
BspDI	ATCGAT	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	1086
BspLI	GGNNCC	4 cut(s)	250, 567, 575, 1453
BspOI	GCTAGC	1 cut(s)	1245
BspPI	GGATC	3 cut(s)	313, 560, 573
BspT107I	GGYRCC	2 cut(s)	573, 1451
BspTNI	GGTCTC	1 cut(s)	1203
BsrGI	TGTACA	1 cut(s)	1389
BsrI	ACTGG	3 cut(s)	752, 1302, 1367
BssECI	CCNNGG	6 cut(s)	27, 252, 428, 569, 1326, 1339
BssMI	GATC	5 cut(s)	40, 305, 373, 493, 565
BssT1I	CCWWGG	2 cut(s)	27, 569
Bst2UI	CCWGG	3 cut(s)	253, 403, 1341
Bst4CI	ACNGT	6 cut(s)	336, 986, 1157, 1170, 1193, 1394
Bst6I	CTCTTC	1 cut(s)	542
BstAUI	TGTACA	1 cut(s)	1389
BstC8I	GCNNGC	3 cut(s)	81, 911, 1243
BstDEI	CTNAG	5 cut(s)	14, 167, 377, 1221, 1369
BstDSI	CCRYGG	2 cut(s)	27, 1326
BstF5I	GGATG	3 cut(s)	37, 262, 1091
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	5 cut(s)	43, 308, 376, 496, 568
BstMAI	GTCTC	2 cut(s)	232, 1203
BstMBI	GATC	5 cut(s)	40, 305, 373, 493, 565
BstNI	CCWGG	3 cut(s)	253, 403, 1341
BstNSI	RCATGY	1 cut(s)	1258
BstSCI	CCNGG	3 cut(s)	251, 401, 1339
BstSFI	CTRYAG	2 cut(s)	231, 1041
BstV1I	GCAGC	2 cut(s)	175, 1340
BstV2I	GAAGAC	1 cut(s)	1169
BstX2I	RGATCY	2 cut(s)	305, 565
BstYI	RGATCY	2 cut(s)	305, 565
Bsu15I	ATCGAT	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	955
BsuRI	GGCC	1 cut(s)	1380
BsuTUI	ATCGAT	1 cut(s)	43
BtgI	CCRYGG	2 cut(s)	27, 1326
BtgZI	GCGATG	1 cut(s)	930
BtsCI	GGATG	3 cut(s)	37, 262, 1091
BtsI	GCAGTG	1 cut(s)	1317
BtsIMutI	CAGTG	3 cut(s)	59, 1166, 1317
Cac8I	GCNNGC	3 cut(s)	81, 911, 1243
CciI	TCATGA	1 cut(s)	1086
CfoI	GCGC	1 cut(s)	909
Cfr13I	GGNCC	1 cut(s)	1300
ClaI	ATCGAT	1 cut(s)	43
Csp6I	GTAC	4 cut(s)	622, 1360, 1390, 1452
CviAII	CATG	7 cut(s)	28, 464, 612, 794, 1087, 1255, 1448
CviQI	GTAC	4 cut(s)	622, 1360, 1390, 1452
DdeI	CTNAG	5 cut(s)	14, 167, 377, 1221, 1369
DpnI	GATC	5 cut(s)	42, 307, 375, 495, 567
DpnII	GATC	5 cut(s)	40, 305, 373, 493, 565
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	27, 569
Eco31I	GGTCTC	1 cut(s)	1203
Eco32I	GATATC	2 cut(s)	685, 693
Eco47I	GGWCC	1 cut(s)	1300
EcoRI	GAATTC	2 cut(s)	124, 539
EcoRII	CCWGG	3 cut(s)	251, 401, 1339
EcoRV	GATATC	2 cut(s)	685, 693
EcoT14I	CCWWGG	2 cut(s)	27, 569
ErhI	CCWWGG	2 cut(s)	27, 569
FaeI	CATG	7 cut(s)	31, 467, 615, 797, 1090, 1258, 1451
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FaqI	GGGAC	2 cut(s)	1267, 1322
FatI	CATG	7 cut(s)	27, 463, 611, 793, 1086, 1254, 1447
FauI	CCCGC	1 cut(s)	1299
FauNDI	CATATG	2 cut(s)	532, 618
Fnu4HI	GCNGC	2 cut(s)	164, 1354
FokI	GGATG	3 cut(s)	44, 269, 1078
Fsp4HI	GCNGC	2 cut(s)	164, 1354
FspBI	CTAG	3 cut(s)	180, 978, 1242
FspI	TGCGCA	1 cut(s)	908
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	2 cut(s)	164, 1354
GsuI	CTGGAG	1 cut(s)	385
HaeIII	GGCC	1 cut(s)	1380
HhaI	GCGC	1 cut(s)	909
Hin1II	CATG	7 cut(s)	31, 467, 615, 797, 1090, 1258, 1451
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HincII	GTYRAC	1 cut(s)	1260
HindII	GTYRAC	1 cut(s)	1260
HindIII	AAGCTT	1 cut(s)	1127
HphI	GGTGA	3 cut(s)	279, 1082, 1198
Hpy166II	GTNNAC	6 cut(s)	922, 973, 1073, 1189, 1260, 1390
Hpy188I	TCNGA	9 cut(s)	130, 213, 327, 510, 645, 1117, 1153, 1224, 1372
Hpy188III	TCNNGA	9 cut(s)	180, 189, 491, 544, 599, 688, 704, 978, 1087
Hpy8I	GTNNAC	6 cut(s)	922, 973, 1073, 1189, 1260, 1390
HpyAV	CCTTC	3 cut(s)	507, 650, 728
HpyCH4III	ACNGT	6 cut(s)	336, 986, 1157, 1170, 1193, 1394
HpyCH4IV	ACGT	2 cut(s)	840, 1107
HpyCH4V	TGCA	6 cut(s)	163, 884, 1001, 1104, 1140, 1512
HpyF3I	CTNAG	5 cut(s)	14, 167, 377, 1221, 1369
HpySE526I	ACGT	2 cut(s)	840, 1107
Hsp92II	CATG	7 cut(s)	31, 467, 615, 797, 1090, 1258, 1451
HspAI	GCGC	1 cut(s)	907
KpnI	GGTACC	1 cut(s)	1455
Kzo9I	GATC	5 cut(s)	40, 305, 373, 493, 565
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	2 cut(s)	175, 1340
LweI	GCATC	1 cut(s)	953
MaeI	CTAG	3 cut(s)	180, 978, 1242
MaeII	ACGT	2 cut(s)	840, 1107
MaeIII	GTNAC	3 cut(s)	145, 1193, 1250
MalI	GATC	5 cut(s)	42, 307, 375, 495, 567
MboI	GATC	5 cut(s)	40, 305, 373, 493, 565
MboII	GAAGA	6 cut(s)	19, 395, 548, 559, 1174, 1385
MflI	RGATCY	2 cut(s)	305, 565
MluCI	AATT	5 cut(s)	124, 539, 798, 1226, 1304
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	835
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	5 cut(s)	347, 447, 825, 1097, 1400
MslI	CAYNNNNRTG	5 cut(s)	468, 501, 585, 843, 1184
MspR9I	CCNGG	3 cut(s)	253, 403, 1341
Mva1269I	GAATGC	2 cut(s)	1222, 1243
MvaI	CCWGG	3 cut(s)	253, 403, 1341
NcoI	CCATGG	1 cut(s)	27
NdeI	CATATG	2 cut(s)	532, 618
NdeII	GATC	5 cut(s)	40, 305, 373, 493, 565
NheI	GCTAGC	1 cut(s)	1241
NlaIII	CATG	7 cut(s)	31, 467, 615, 797, 1090, 1258, 1451
NlaIV	GGNNCC	4 cut(s)	250, 567, 575, 1453
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	2 cut(s)	145, 1250
NsbI	TGCGCA	1 cut(s)	908
NspI	RCATGY	1 cut(s)	1258
OliI	CACNNNNGTG	2 cut(s)	843, 1184
PagI	TCATGA	1 cut(s)	1086
PciI	ACATGT	1 cut(s)	1254
PctI	GAATGC	2 cut(s)	1222, 1243
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	9 cut(s)	236, 364, 595, 764, 938, 1050, 1112, 1148, 1313
PfoI	TCCNGGA	1 cut(s)	401
PkrI	GCNGC	2 cut(s)	165, 1355
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PscI	ACATGT	1 cut(s)	1254
Psp6I	CCWGG	3 cut(s)	251, 401, 1339
PspGI	CCWGG	3 cut(s)	251, 401, 1339
PspN4I	GGNNCC	4 cut(s)	250, 567, 575, 1453
PspPI	GGNCC	1 cut(s)	1300
PsuI	RGATCY	2 cut(s)	305, 565
RsaI	GTAC	4 cut(s)	623, 1361, 1391, 1453
RsaNI	GTAC	4 cut(s)	622, 1360, 1390, 1452
RseI	CAYNNNNRTG	5 cut(s)	468, 501, 585, 843, 1184
SaqAI	TTAA	5 cut(s)	347, 447, 825, 1097, 1400
SatI	GCNGC	2 cut(s)	164, 1354
Sau3AI	GATC	5 cut(s)	40, 305, 373, 493, 565
Sau96I	GGNCC	1 cut(s)	1300
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	3 cut(s)	253, 403, 1341
SfaNI	GCATC	1 cut(s)	953
SfcI	CTRYAG	2 cut(s)	231, 1041
SinI	GGWCC	1 cut(s)	1300
SmiMI	CAYNNNNRTG	5 cut(s)	468, 501, 585, 843, 1184
Sse9I	AATT	5 cut(s)	124, 539, 798, 1226, 1304
SsiI	CCGC	3 cut(s)	77, 475, 1292
SspMI	CTAG	3 cut(s)	180, 978, 1242
StyD4I	CCNGG	3 cut(s)	251, 401, 1339
StyI	CCWWGG	2 cut(s)	27, 569
TaaI	ACNGT	6 cut(s)	336, 986, 1157, 1170, 1193, 1394
TaiI	ACGT	2 cut(s)	843, 1110
TaqI	TCGA	5 cut(s)	5, 20, 43, 732, 1490
TasI	AATT	5 cut(s)	124, 539, 798, 1226, 1304
TatI	WGTACW	2 cut(s)	621, 1389
TfiI	GAWTC	9 cut(s)	236, 364, 595, 764, 938, 1050, 1112, 1148, 1313
Tru1I	TTAA	5 cut(s)	347, 447, 825, 1097, 1400
Tru9I	TTAA	5 cut(s)	347, 447, 825, 1097, 1400
TscAI	CASTG	3 cut(s)	59, 1173, 1324
TseFI	GTSAC	2 cut(s)	145, 1250
TseI	GCWGC	2 cut(s)	163, 1353
Tsp45I	GTSAC	2 cut(s)	145, 1250
TspDTI	ATGAA	9 cut(s)	516, 549, 603, 669, 687, 912, 1075, 1175, 1297
TspGWI	ACGGA	5 cut(s)	121, 318, 886, 983, 1435
TspRI	CASTG	3 cut(s)	59, 1173, 1324
VpaK11BI	GGWCC	1 cut(s)	1300
XapI	RAATTY	3 cut(s)	124, 539, 1226
XbaI	TCTAGA	2 cut(s)	179, 977
XceI	RCATGY	1 cut(s)	1258
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	3 cut(s)	180, 978, 1242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.