Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029230.1

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1418

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029230.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 767 bp

ctctatcatcaaaggcagggaagaattcagtgcttctacctactgggcgcttcaaagctaaggacatgatgtctgaagaggagatgttcatggtgtctttgatctgcaatttggaagttgattgtgagaagcttctagtctgcaaatctgatcttgattgtataaagaccctgcattttgatacagaggtcaaccctagttttggaaaatcttacagttggccccaagaatttgcattgaatggttgcaccagtgatgcttcagcaacatacttcctggggaaatctccatttccagctttggatgcatttgtagaatttgttgctacaattggaaatgtctcaggtaaaattcgcagctggtattggttctcagagtttggactcatggtctacagcatgtcaagaaacagatactgtgagcgaattggcagacagcacaaaagcaatcatgtgatatacattgctgacctcagaaagggtgtttattatcagaaatgtcatgatcccgactgcagaggtgaggaaaagttaatatcgtgctaccgttctccatcacgtccgattccatggaatattgtccctgacatggtgtatgaatgtcaaaaagatcatgaacgtgttttttttgatgatgagaacacggcaagcagcggcgttacagattcatggtggcttgaagctataagagttgcagatgaagttgaaaataagcagaattcattagagctcagcaatctggtgggactaaatcttccgtgtcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

254

Amino Acids

29.04

Weight (kDa)

5.45

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	392
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	1 cut(s)	499
AcsI	RAATTY	5 cut(s)	24, 229, 316, 350, 717
AcuI	CTGAAG	2 cut(s)	95, 245
AfiI	CCNNNNNNNGG	3 cut(s)	202, 477, 588
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	4 cut(s)	54, 240, 679, 706
AhdI	GACNNNNNGTC	2 cut(s)	69, 388
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	6 cut(s)	58, 132, 298, 359, 682, 729
AluI	AGCT	6 cut(s)	58, 132, 298, 359, 682, 729
Alw21I	GWGCWC	1 cut(s)	731
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	499
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	356, 650
ApoI	RAATTY	5 cut(s)	24, 229, 316, 350, 717
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	532
BaeI	ACNNNNGTAYC	2 cut(s)	173, 206
BanII	GRGCYC	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	731
BbvI	GCAGC	2 cut(s)	368, 662
BccI	CCATC	1 cut(s)	561
BceAI	ACGGC	1 cut(s)	659
BciT130I	CCWGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	2 cut(s)	136, 197
BfmI	CTRYAG	2 cut(s)	393, 513
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	3 cut(s)	357, 651, 654
BlpI	GCTNAGC	1 cut(s)	730
BlsI	GCNGC	3 cut(s)	358, 652, 655
Bme1390I	CCNGG	1 cut(s)	277
BmeRI	GACNNNNNGTC	2 cut(s)	69, 388
BmgBI	CACGTC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	246, 294
BmuI	ACTGGG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	59
Bpu1102I	GCTNAGC	1 cut(s)	730
BsaJI	CCNNGG	2 cut(s)	276, 568
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 477, 588
Bse1I	ACTGG	2 cut(s)	48, 251
Bse3DI	GCAATG	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	2 cut(s)	276, 568
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	202, 477, 588
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	4 cut(s)	356, 386, 486, 744
BseNI	ACTGG	2 cut(s)	48, 251
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	368, 662
BshFI	GGCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	731
BslFI	GGGAC	2 cut(s)	565, 758
BslI	CCNNNNNNNGG	3 cut(s)	202, 477, 588
BsmAI	GTCTC	1 cut(s)	345
BsmFI	GGGAC	2 cut(s)	565, 758
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	731
Bsp143I	GATC	4 cut(s)	101, 150, 504, 609
Bsp1720I	GCTNAGC	1 cut(s)	730
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	1 cut(s)	653
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	4 cut(s)	355, 385, 485, 743
BspHI	TCATGA	2 cut(s)	501, 612
BspLI	GGNNCC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	48, 251
BssECI	CCNNGG	2 cut(s)	276, 568
BssMI	GATC	4 cut(s)	101, 150, 504, 609
BssT1I	CCWWGG	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	3 cut(s)	217, 418, 547
Bst6I	CTCTTC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	5 cut(s)	59, 342, 372, 472, 730
BstDSI	CCRYGG	1 cut(s)	568
BstENI	CCTNNNNNAGG	1 cut(s)	475
BstF5I	GGATG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	4 cut(s)	104, 153, 507, 612
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	4 cut(s)	101, 150, 504, 609
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	277
BstNSI	RCATGY	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	2 cut(s)	393, 513
BstV1I	GCAGC	2 cut(s)	368, 662
BsuRI	GGCC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	568
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	35, 258
Cac8I	GCNNGC	1 cut(s)	648
CaiI	CAGNNNCTG	1 cut(s)	416
CciI	TCATGA	2 cut(s)	501, 612
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	221
CviJI	RGCY	8 cut(s)	58, 132, 222, 298, 359, 675, 682, 729
CviKI_1	RGCY	8 cut(s)	58, 132, 222, 298, 359, 675, 682, 729
DdeI	CTNAG	5 cut(s)	59, 342, 372, 472, 730
DpnI	GATC	4 cut(s)	103, 152, 506, 611
DpnII	GATC	4 cut(s)	101, 150, 504, 609
DriI	GACNNNNNGTC	2 cut(s)	69, 388
Eam1104I	CTCTTC	1 cut(s)	71
Eam1105I	GACNNNNNGTC	2 cut(s)	69, 388
EarI	CTCTTC	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	731
Eco53kI	GAGCTC	1 cut(s)	729
Eco57I	CTGAAG	2 cut(s)	95, 245
EcoICRI	GAGCTC	1 cut(s)	729
EcoNI	CCTNNNNNAGG	1 cut(s)	475
EcoRI	GAATTC	2 cut(s)	24, 717
EcoRII	CCWGG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	731
ErhI	CCWWGG	1 cut(s)	568
FaqI	GGGAC	2 cut(s)	565, 758
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	3 cut(s)	357, 651, 654
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	1 cut(s)	731
Fsp4HI	GCNGC	3 cut(s)	357, 651, 654
FspBI	CTAG	2 cut(s)	136, 197
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	357, 651, 654
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	222
HhaI	GCGC	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	3 cut(s)	383, 564, 664
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	2 cut(s)	192, 393
Hpy188I	TCNGA	6 cut(s)	75, 150, 375, 475, 494, 563
Hpy188III	TCNNGA	5 cut(s)	154, 404, 502, 508, 613
Hpy8I	GTNNAC	2 cut(s)	192, 393
HpyCH4III	ACNGT	3 cut(s)	217, 418, 547
HpyCH4IV	ACGT	2 cut(s)	558, 618
HpyCH4V	TGCA	8 cut(s)	107, 143, 174, 235, 248, 307, 515, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	5 cut(s)	59, 342, 372, 472, 730
HpySE526I	ACGT	2 cut(s)	558, 618
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	101, 150, 504, 609
Lsp1109I	GCAGC	2 cut(s)	368, 662
LweI	GCATC	2 cut(s)	246, 294
MaeI	CTAG	2 cut(s)	136, 197
MaeII	ACGT	2 cut(s)	558, 618
MaeIII	GTNAC	1 cut(s)	657
MalI	GATC	4 cut(s)	103, 152, 506, 611
MboI	GATC	4 cut(s)	101, 150, 504, 609
MboII	GAAGA	3 cut(s)	33, 88, 745
MfeI	CAATTG	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	731
MluCI	AATT	8 cut(s)	24, 108, 229, 316, 329, 350, 425, 717
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	5 cut(s)	72, 180, 481, 511, 516
Mph1103I	ATGCAT	1 cut(s)	309
MseI	TTAA	2 cut(s)	532, 765
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	2 cut(s)	359, 653
MspR9I	CCNGG	1 cut(s)	277
MunI	CAATTG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	304
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	4 cut(s)	101, 150, 504, 609
NlaIV	GGNNCC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	309
NspI	RCATGY	1 cut(s)	402
PagI	TCATGA	2 cut(s)	501, 612
PfeI	GAWTC	2 cut(s)	564, 664
PkrI	GCNGC	3 cut(s)	358, 652, 655
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	731
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	617
SacI	GAGCTC	1 cut(s)	731
SaqAI	TTAA	2 cut(s)	532, 765
SatI	GCNGC	3 cut(s)	357, 651, 654
Sau3AI	GATC	4 cut(s)	101, 150, 504, 609
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	731
SfaNI	GCATC	2 cut(s)	246, 294
SfcI	CTRYAG	2 cut(s)	393, 513
SmiMI	CAYNNNNRTG	1 cut(s)	617
Sse9I	AATT	8 cut(s)	24, 108, 229, 316, 329, 350, 425, 717
SsiI	CCGC	1 cut(s)	653
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	2 cut(s)	136, 197
SstI	GAGCTC	1 cut(s)	731
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	3 cut(s)	217, 418, 547
TaiI	ACGT	2 cut(s)	561, 621
TasI	AATT	8 cut(s)	24, 108, 229, 316, 329, 350, 425, 717
TauI	GCSGC	1 cut(s)	656
TfiI	GAWTC	2 cut(s)	564, 664
Tru1I	TTAA	2 cut(s)	532, 765
Tru9I	TTAA	2 cut(s)	532, 765
TscAI	CASTG	2 cut(s)	35, 258
TseI	GCWGC	2 cut(s)	356, 650
TspDTI	ATGAA	6 cut(s)	78, 611, 629, 656, 710, 713
TspGWI	ACGGA	1 cut(s)	746
TspRI	CASTG	2 cut(s)	35, 258
XagI	CCTNNNNNAGG	1 cut(s)	475
XapI	RAATTY	5 cut(s)	24, 229, 316, 350, 717
XceI	RCATGY	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	392
XspI	CTAG	2 cut(s)	136, 197
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.