Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Reverse (-)

22705905 .. 22718257

Gene Structure 12353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG118300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGCTAAAGGAAGAGGGTCTGAAAGAGAACTTCAATACTTTCCACGGCAATTTCCAGGGCAATGATGATCCAAAATGTTCGCAGGGTTCATATGATGAGAAAGGTGATGAGAGTGATCATGCCACCGGGAGTCAGAATGAGAACCCCAGTGTCAATCCCAAATCTTCAGGAAACTCGAAAAATGGTGCATTTGTCACCGAGATATGCTCACGGATATCAAGTGCAAAAGGGAGGGATGGAAGATTTGAGAATTTGTTTATTAGAAAAGATTCAAGCTCTGCATACTTTAGTCACCTATTTGTGGACACTGCTGTGTATACCAGGAATCGTTGTTTTCGTTTAGCTCTATCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTTATGGGCGCTTCAAAACTAAGGACATGATGTCTGAAGAGGAGATGTTCATGGCGTCTTTGATCTGCAATTTGGAAGTTGATTATGGGAAGCTTCTAGTCTGCAAATCTGATCTTGATTGTATAAAGACCCTGCATTTTGATACACAGAGGTATATTATAGTCAACCCTAGTTTTGGAAACTCTTACAGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAGTGATGCTTCAGCAACATACTTCCTGGGGAAATCTCCATTTCCAGCTTTGGATGCATTTGTAGAATTTGTTGCTACAATTGGAAATGTCTCAGCTGGTATTGGTTCTCAGAGTTTGGACTCATGGTCTACAGCATGTCAAGAAACAGATACTGTGAGCGAATTGGCAGACAGCACAAAAGCAATCATGGTAGTTCCATTGACTGTTGTTGTTATTGTTACCACAGCTCAAAAGCTACCGTTTATTGATGTCGCAAAAGGAGTTCGCATGTTTTCAAAGTTGAAGCGATGGTGCAAAGCAGTAGTCTCTGGTAGGGATCACCAGATGGTTAATGCCATTGGACTGCAAAATTTAAGCAAAAAGTTGAAAATAAGGAGGTGCCAAATAAAACGCCAGCAAGCATACCGTATGGAGTGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

343

Amino Acids

38.12

Weight (kDa)

8.4

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	987
AccI	GTMKAC	2 cut(s)	320, 737
AclWI	GGATC	2 cut(s)	65, 933
AcsI	RAATTY	5 cut(s)	253, 370, 587, 674, 958
AcuI	CTGAAG	3 cut(s)	153, 441, 603
AcyI	GRCGYC	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	304, 560
AgsI	TTSAA	7 cut(s)	37, 276, 400, 598, 885, 892, 976
AhdI	GACNNNNNGTC	2 cut(s)	415, 733
AjnI	CCWGG	3 cut(s)	57, 323, 633
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	8 cut(s)	7, 279, 347, 478, 656, 704, 836, 844
AluI	AGCT	8 cut(s)	7, 279, 347, 478, 656, 704, 836, 844
Alw26I	GTCTC	2 cut(s)	703, 919
AlwI	GGATC	2 cut(s)	65, 933
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	1 cut(s)	578
ApoI	RAATTY	5 cut(s)	253, 370, 587, 674, 958
ArsI	GACNNNNNNTTYG	2 cut(s)	897, 929
Asp700I	GAANNNNTTC	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	579
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	4 cut(s)	119, 190, 287, 920
BanI	GGYRCC	1 cut(s)	987
BccI	CCATC	3 cut(s)	233, 891, 928
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	3 cut(s)	59, 325, 635
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	703, 919
BfaI	CTAG	2 cut(s)	482, 555
BfmI	CTRYAG	1 cut(s)	738
BfoI	RGCGCY	1 cut(s)	397
Bme1390I	CCNGG	4 cut(s)	59, 130, 325, 635
BmeRI	GACNNNNNGTC	2 cut(s)	415, 733
BmgT120I	GGNCC	1 cut(s)	579
BmiI	GGNNCC	2 cut(s)	581, 989
BmrFI	CCNGG	4 cut(s)	59, 130, 325, 635
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	604, 652
BmuI	ACTGGG	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpuMI	CCSGG	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	3 cut(s)	46, 58, 634
BsaXI	ACNNNNNCTCC	1 cut(s)	1013
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 560
Bse1I	ACTGG	2 cut(s)	150, 609
Bse3DI	GCAATG	1 cut(s)	70
BseBI	CCWGG	3 cut(s)	59, 325, 635
BseDI	CCNNGG	3 cut(s)	46, 58, 634
BseGI	GGATG	2 cut(s)	244, 667
BseLI	CCNNNNNNNGG	2 cut(s)	304, 560
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	714, 731
BseNI	ACTGG	2 cut(s)	150, 609
BseRI	GAGGAG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	580
BshNI	GGYRCC	1 cut(s)	987
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	304, 560
BsmAI	GTCTC	2 cut(s)	703, 919
BsnI	GGCC	1 cut(s)	580
Bsp143I	GATC	5 cut(s)	70, 118, 447, 496, 925
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	2 cut(s)	713, 730
BspLI	GGNNCC	2 cut(s)	581, 989
BspPI	GGATC	2 cut(s)	65, 933
BspT107I	GGYRCC	1 cut(s)	987
BsrDI	GCAATG	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	150, 609
BssECI	CCNNGG	3 cut(s)	46, 58, 634
BssMI	GATC	5 cut(s)	70, 118, 447, 496, 925
BssNAI	GTATAC	1 cut(s)	321
BssNI	GRCGYC	1 cut(s)	440
Bst1107I	GTATAC	1 cut(s)	321
Bst2UI	CCWGG	3 cut(s)	59, 325, 635
Bst4CI	ACNGT	5 cut(s)	575, 763, 814, 849, 1016
Bst6I	CTCTTC	2 cut(s)	9, 417
BstACI	GRCGYC	1 cut(s)	440
BstC8I	GCNNGC	2 cut(s)	1004, 1008
BstDEI	CTNAG	3 cut(s)	405, 700, 717
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	244, 667
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	5 cut(s)	73, 121, 450, 499, 928
BstMAI	GTCTC	2 cut(s)	703, 919
BstMBI	GATC	5 cut(s)	70, 118, 447, 496, 925
BstMWI	GCNNNNNNNGC	1 cut(s)	662
BstNI	CCWGG	3 cut(s)	59, 325, 635
BstNSI	RCATGY	2 cut(s)	747, 880
BstSCI	CCNGG	4 cut(s)	57, 128, 323, 633
BstSFI	CTRYAG	1 cut(s)	738
BstZ17I	GTATAC	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	580
BtgI	CCRYGG	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	910
BtsCI	GGATG	2 cut(s)	244, 667
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	4 cut(s)	157, 309, 381, 616
Cac8I	GCNNGC	2 cut(s)	1004, 1008
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	579
CseI	GACGC	1 cut(s)	429
CviAII	CATG	7 cut(s)	122, 412, 436, 732, 744, 796, 877
CviJI	RGCY	9 cut(s)	7, 279, 347, 478, 580, 656, 704, 836, 844
CviKI_1	RGCY	9 cut(s)	7, 279, 347, 478, 580, 656, 704, 836, 844
DdeI	CTNAG	3 cut(s)	405, 700, 717
DpnI	GATC	5 cut(s)	72, 120, 449, 498, 927
DpnII	GATC	5 cut(s)	70, 118, 447, 496, 925
DriI	GACNNNNNGTC	2 cut(s)	415, 733
Eam1104I	CTCTTC	2 cut(s)	9, 417
Eam1105I	GACNNNNNGTC	2 cut(s)	415, 733
EarI	CTCTTC	2 cut(s)	9, 417
Eco32I	GATATC	1 cut(s)	219
Eco57I	CTGAAG	3 cut(s)	153, 441, 603
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	3 cut(s)	57, 323, 633
EcoRV	GATATC	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	667
FaeI	CATG	7 cut(s)	125, 415, 439, 735, 747, 799, 880
FatI	CATG	7 cut(s)	121, 411, 435, 731, 743, 795, 876
FauNDI	CATATG	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	2 cut(s)	320, 737
FokI	GGATG	2 cut(s)	251, 674
FspBI	CTAG	2 cut(s)	482, 555
GlaI	GCGC	1 cut(s)	395
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	7 cut(s)	125, 415, 439, 735, 747, 799, 880
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	4 cut(s)	133, 272, 328, 728
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	4 cut(s)	119, 190, 287, 920
Hpy166II	GTNNAC	4 cut(s)	307, 321, 550, 738
Hpy188I	TCNGA	5 cut(s)	24, 138, 421, 496, 720
Hpy188III	TCNNGA	3 cut(s)	171, 500, 749
Hpy8I	GTNNAC	4 cut(s)	307, 321, 550, 738
HpyCH4III	ACNGT	5 cut(s)	575, 763, 814, 849, 1016
HpyF10VI	GCNNNNNNNGC	1 cut(s)	662
HpyF3I	CTNAG	3 cut(s)	405, 700, 717
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	7 cut(s)	125, 415, 439, 735, 747, 799, 880
HspAI	GCGC	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	5 cut(s)	70, 118, 447, 496, 925
LmnI	GCTCC	1 cut(s)	4
LweI	GCATC	2 cut(s)	604, 652
MaeI	CTAG	2 cut(s)	482, 555
MaeIII	GTNAC	3 cut(s)	196, 293, 826
MalI	GATC	5 cut(s)	72, 120, 449, 498, 927
MboI	GATC	5 cut(s)	70, 118, 447, 496, 925
MboII	GAAGA	5 cut(s)	26, 159, 255, 379, 434
MfeI	CAATTG	1 cut(s)	687
MluCI	AATT	9 cut(s)	52, 253, 370, 454, 587, 674, 687, 770, 958
MlyI	GAGTC	2 cut(s)	142, 722
MnlI	CCTC	5 cut(s)	10, 228, 418, 528, 978
Mph1103I	ATGCAT	1 cut(s)	667
MroXI	GAANNNNTTC	1 cut(s)	271
MseI	TTAA	2 cut(s)	939, 962
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	4 cut(s)	59, 130, 325, 635
MunI	CAATTG	1 cut(s)	687
MvaI	CCWGG	3 cut(s)	59, 325, 635
MwoI	GCNNNNNNNGC	1 cut(s)	662
NciI	CCSGG	1 cut(s)	130
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	5 cut(s)	70, 118, 447, 496, 925
NlaIII	CATG	7 cut(s)	125, 415, 439, 735, 747, 799, 880
NlaIV	GGNNCC	2 cut(s)	581, 989
NmuCI	GTSAC	2 cut(s)	196, 293
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	2 cut(s)	747, 880
OliI	CACNNNNGTG	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	272, 328
PleI	GAGTC	2 cut(s)	141, 722
PpsI	GAGTC	2 cut(s)	141, 722
Psp6I	CCWGG	3 cut(s)	57, 323, 633
PspGI	CCWGG	3 cut(s)	57, 323, 633
PspN4I	GGNNCC	2 cut(s)	581, 989
PspPI	GGNCC	1 cut(s)	579
PstNI	CAGNNNCTG	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	704
RseI	CAYNNNNRTG	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	939, 962
Sau3AI	GATC	5 cut(s)	70, 118, 447, 496, 925
Sau96I	GGNCC	1 cut(s)	579
SchI	GAGTC	2 cut(s)	142, 722
ScrFI	CCNGG	4 cut(s)	59, 130, 325, 635
SfaNI	GCATC	2 cut(s)	604, 652
SfcI	CTRYAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	9 cut(s)	52, 253, 370, 454, 587, 674, 687, 770, 958
SspMI	CTAG	2 cut(s)	482, 555
StyD4I	CCNGG	4 cut(s)	57, 128, 323, 633
TaaI	ACNGT	5 cut(s)	575, 763, 814, 849, 1016
TaqI	TCGA	1 cut(s)	179
TasI	AATT	9 cut(s)	52, 253, 370, 454, 587, 674, 687, 770, 958
TfiI	GAWTC	2 cut(s)	272, 328
Tru1I	TTAA	2 cut(s)	939, 962
Tru9I	TTAA	2 cut(s)	939, 962
TscAI	CASTG	4 cut(s)	157, 316, 381, 616
TseFI	GTSAC	2 cut(s)	196, 293
Tsp45I	GTSAC	2 cut(s)	196, 293
TspDTI	ATGAA	2 cut(s)	81, 424
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	4 cut(s)	157, 316, 381, 616
XapI	RAATTY	5 cut(s)	253, 370, 587, 674, 958
XceI	RCATGY	2 cut(s)	747, 880
XmiI	GTMKAC	2 cut(s)	320, 737
XmnI	GAANNNNTTC	1 cut(s)	271
XspI	CTAG	2 cut(s)	482, 555
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.