Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Reverse (-)

19927968 .. 19936311

Gene Structure 8344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAAATGTAAAAAAATATCTTGCTATGAATGTAAATCCAAAATAACAAAGTTTAAGCAGGGGAAGATGATGGTCATAAAAGTGAGCATCCCAGGCTCGGGTGATAGTCTCCTCTCTGTCGTCGGTGTGAGAGAGGATGAGGGGGTACCTGCAAAAGACCCTTCGATCTATGATTGCCACACTAAATATCGCATTAACTGTCACATTTACGGCTACATTAACTATCGCACTTACTGTTGCCATTATTGCATGGTCAAAGTATTTGACCACCCCCACATTGGATTCTTAAGGGTGCGTCGCAATCCTAAGTTGAAACAGATTTGGGGTTTTGAATGTTCGCAGGGATCAGATGATGAGAAAGGTGATGAGAGTGATCATGCCACCGGGAGTCAGAATGAGAACCCCAGTGTCAATCCCAAATCTTCAGGAAACTCGAAAAATGCAAAGTTCTCTCGATATTTAATTATTCGCATTCAGAAGACTGCTTTTAAGGACAACTCACATGTAGGTGCATTTGTCACCGAGATATGCTCACGGATATCAAGTGCAAAAGGGAGGGATGGAAGATTTGACAATTTGTTTATTAGAAAAGATTCAAGCTCTGCATACTTTAGTCACCTATTTGTGGACACTGCTGTGTATACCAGGAATCATTTTTTTCGTTTAGCTCTATCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTTATGGGCGCTTCAAAACTAAGGACATGATGTCTGAAGAGGAGATGTTCATAGCGTCTTTGATCTGCAATTTGGAAGTTGATTATGGGAAGCTTCTAGTCTGCAAATGTGATCTTGATTGTATAAAGACCCTGCATTTTGATACACAGAGGTATATTAGAGTCAACCCTAGTTTTGGAAAATCTTACAGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAGTGATGCTTCAGCAACATACTTCCTGGGGAAATCTCCATTTCCAGCTTTGGATGCATTTGTAGAATTTGTTGCTACAATTGGAAATGTCTCAGGTAAAATTGGCAGCTGGTATTGGTTCTCAGAGTTTGGACTCATGGTCTACAGCATGTCAAGAAACAGATACTGTGAGCGAATTGGCAGACAGCACAAAAGCAATCATGGTAAAGCCTATACATTGTATCTTATGCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

388

Amino Acids

44.2

Weight (kDa)

9.19

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AccI	GTMKAC	2 cut(s)	641, 1071
AclWI	GGATC	1 cut(s)	352
AcsI	RAATTY	3 cut(s)	691, 908, 995
AcuI	CTGAAG	3 cut(s)	408, 762, 924
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	5 cut(s)	97, 98, 278, 625, 881
AflII	CTTAAG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	5 cut(s)	313, 332, 597, 721, 919
AhdI	GACNNNNNGTC	2 cut(s)	736, 1067
AjnI	CCWGG	3 cut(s)	91, 644, 954
AleI	CACNNNNGTG	1 cut(s)	635
AluBI	AGCT	5 cut(s)	600, 668, 799, 977, 1038
AluI	AGCT	5 cut(s)	600, 668, 799, 977, 1038
Alw26I	GTCTC	2 cut(s)	113, 1024
AlwI	GGATC	1 cut(s)	352
AlwNI	CAGNNNCTG	1 cut(s)	1095
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	899
ApeKI	GCWGC	1 cut(s)	1035
ApoI	RAATTY	3 cut(s)	691, 908, 995
Asp700I	GAANNNNTTC	1 cut(s)	592
Asp718I	GGTACC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	717
AspS9I	GGNCC	1 cut(s)	900
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	4 cut(s)	113, 374, 511, 608
AvaI	CYCGRG	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	1047
BccI	CCATC	2 cut(s)	64, 554
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	3 cut(s)	93, 646, 956
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	113, 1024
BfaI	CTAG	2 cut(s)	803, 876
BfmI	CTRYAG	1 cut(s)	1072
BfoI	RGCGCY	1 cut(s)	718
BfrI	CTTAAG	1 cut(s)	286
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	1 cut(s)	1036
BlsI	GCNGC	1 cut(s)	1037
Bme1390I	CCNGG	4 cut(s)	93, 385, 646, 956
BmeRI	GACNNNNNGTC	2 cut(s)	736, 1067
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	900
BmiI	GGNNCC	2 cut(s)	147, 902
BmrFI	CCNGG	4 cut(s)	93, 385, 646, 956
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	3 cut(s)	96, 925, 973
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	485
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpuMI	CCSGG	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	91, 955
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 98, 278, 625, 881
Bse1I	ACTGG	2 cut(s)	405, 930
BseBI	CCWGG	3 cut(s)	93, 646, 956
BseDI	CCNNGG	2 cut(s)	91, 955
BseGI	GGATG	4 cut(s)	87, 142, 565, 988
BseLI	CCNNNNNNNGG	5 cut(s)	97, 98, 278, 625, 881
BseMII	CTCAG	2 cut(s)	1035, 1065
BseNI	ACTGG	2 cut(s)	405, 930
BseRI	GAGGAG	2 cut(s)	101, 761
BseXI	GCAGC	1 cut(s)	1047
BshFI	GGCC	1 cut(s)	901
BshNI	GGYRCC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	384
BslI	CCNNNNNNNGG	5 cut(s)	97, 98, 278, 625, 881
BsmAI	GTCTC	2 cut(s)	113, 1024
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	901
BsoBI	CYCGRG	1 cut(s)	97
Bsp143I	GATC	5 cut(s)	165, 344, 373, 768, 817
BspANI	GGCC	1 cut(s)	901
BspCNI	CTCAG	2 cut(s)	1034, 1064
BspHI	TCATGA	1 cut(s)	1163
BspLI	GGNNCC	2 cut(s)	147, 902
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	352
BspT107I	GGYRCC	1 cut(s)	145
BspTI	CTTAAG	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	405, 930
BssECI	CCNNGG	2 cut(s)	91, 955
BssMI	GATC	5 cut(s)	165, 344, 373, 768, 817
BssNAI	GTATAC	1 cut(s)	642
Bst1107I	GTATAC	1 cut(s)	642
Bst2UI	CCWGG	3 cut(s)	93, 646, 956
Bst4CI	ACNGT	4 cut(s)	200, 236, 896, 1097
Bst6I	CTCTTC	1 cut(s)	738
BstAFI	CTTAAG	1 cut(s)	286
BstDEI	CTNAG	4 cut(s)	306, 726, 1021, 1051
BstF5I	GGATG	4 cut(s)	87, 142, 565, 988
BstH2I	RGCGCY	1 cut(s)	718
BstHHI	GCGC	1 cut(s)	717
BstKTI	GATC	5 cut(s)	168, 347, 376, 771, 820
BstMAI	GTCTC	2 cut(s)	113, 1024
BstMBI	GATC	5 cut(s)	165, 344, 373, 768, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 246, 983
BstNI	CCWGG	3 cut(s)	93, 646, 956
BstNSI	RCATGY	2 cut(s)	506, 1081
BstSCI	CCNGG	4 cut(s)	91, 383, 644, 954
BstSFI	CTRYAG	1 cut(s)	1072
BstV1I	GCAGC	1 cut(s)	1047
BstV2I	GAAGAC	1 cut(s)	485
BstZ17I	GTATAC	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	901
BtsCI	GGATG	4 cut(s)	87, 142, 565, 988
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	4 cut(s)	412, 630, 702, 937
BveI	ACCTGC	1 cut(s)	157
CaiI	CAGNNNCTG	1 cut(s)	1095
CciI	TCATGA	1 cut(s)	1163
CfoI	GCGC	1 cut(s)	717
Cfr13I	GGNCC	1 cut(s)	900
CseI	GACGC	2 cut(s)	284, 750
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	8 cut(s)	250, 377, 503, 733, 1066, 1078, 1130, 1164
CviJI	RGCY	9 cut(s)	96, 213, 600, 668, 799, 901, 977, 1038, 1139
CviKI_1	RGCY	9 cut(s)	96, 213, 600, 668, 799, 901, 977, 1038, 1139
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	4 cut(s)	306, 726, 1021, 1051
DpnI	GATC	5 cut(s)	167, 346, 375, 770, 819
DpnII	GATC	5 cut(s)	165, 344, 373, 768, 817
DriI	GACNNNNNGTC	2 cut(s)	736, 1067
Eam1104I	CTCTTC	1 cut(s)	738
Eam1105I	GACNNNNNGTC	2 cut(s)	736, 1067
EarI	CTCTTC	1 cut(s)	738
Eco32I	GATATC	1 cut(s)	540
Eco57I	CTGAAG	3 cut(s)	408, 762, 924
Eco88I	CYCGRG	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	691
EcoRII	CCWGG	3 cut(s)	91, 644, 954
EcoRV	GATATC	1 cut(s)	540
EcoT22I	ATGCAT	1 cut(s)	988
FaeI	CATG	8 cut(s)	253, 380, 506, 736, 1069, 1081, 1133, 1167
FatI	CATG	8 cut(s)	249, 376, 502, 732, 1065, 1077, 1129, 1163
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	2 cut(s)	641, 1071
Fnu4HI	GCNGC	1 cut(s)	1036
FokI	GGATG	4 cut(s)	74, 149, 572, 995
Fsp4HI	GCNGC	1 cut(s)	1036
FspBI	CTAG	2 cut(s)	803, 876
GlaI	GCGC	1 cut(s)	716
GluI	GCNGC	1 cut(s)	1036
HaeII	RGCGCY	1 cut(s)	718
HaeIII	GGCC	1 cut(s)	901
HapII	CCGG	1 cut(s)	384
HgaI	GACGC	2 cut(s)	284, 750
HhaI	GCGC	1 cut(s)	717
Hin1II	CATG	8 cut(s)	253, 380, 506, 736, 1069, 1081, 1133, 1167
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	6 cut(s)	282, 388, 593, 649, 867, 1062
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	4 cut(s)	113, 374, 511, 608
Hpy166II	GTNNAC	4 cut(s)	628, 642, 871, 1072
Hpy188I	TCNGA	5 cut(s)	349, 393, 477, 742, 1054
Hpy188III	TCNNGA	5 cut(s)	426, 453, 821, 1083, 1164
Hpy8I	GTNNAC	4 cut(s)	628, 642, 871, 1072
Hpy99I	CGWCG	2 cut(s)	125, 300
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	4 cut(s)	200, 236, 896, 1097
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 246, 983
HpyF3I	CTNAG	4 cut(s)	306, 726, 1021, 1051
Hsp92II	CATG	8 cut(s)	253, 380, 506, 736, 1069, 1081, 1133, 1167
HspAI	GCGC	1 cut(s)	715
KpnI	GGTACC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	5 cut(s)	165, 344, 373, 768, 817
Lsp1109I	GCAGC	1 cut(s)	1047
LweI	GCATC	3 cut(s)	96, 925, 973
MaeI	CTAG	2 cut(s)	803, 876
MaeIII	GTNAC	3 cut(s)	200, 517, 614
MalI	GATC	5 cut(s)	167, 346, 375, 770, 819
MboI	GATC	5 cut(s)	165, 344, 373, 768, 817
MboII	GAAGA	6 cut(s)	76, 414, 490, 576, 700, 755
MfeI	CAATTG	1 cut(s)	1008
MluCI	AATT	9 cut(s)	462, 574, 691, 775, 908, 995, 1008, 1029, 1104
MlyI	GAGTC	3 cut(s)	397, 876, 1056
MnlI	CCTC	6 cut(s)	122, 127, 133, 549, 739, 849
Mph1103I	ATGCAT	1 cut(s)	988
MroXI	GAANNNNTTC	1 cut(s)	592
MseI	TTAA	6 cut(s)	54, 195, 219, 287, 461, 489
MslI	CAYNNNNRTG	3 cut(s)	80, 507, 635
MspA1I	CMGCKG	1 cut(s)	1038
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	4 cut(s)	93, 385, 646, 956
MunI	CAATTG	1 cut(s)	1008
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	3 cut(s)	93, 646, 956
MwoI	GCNNNNNNNGC	3 cut(s)	93, 246, 983
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	5 cut(s)	165, 344, 373, 768, 817
NlaIII	CATG	8 cut(s)	253, 380, 506, 736, 1069, 1081, 1133, 1167
NlaIV	GGNNCC	2 cut(s)	147, 902
NmuCI	GTSAC	3 cut(s)	200, 517, 614
NsiI	ATGCAT	1 cut(s)	988
NspI	RCATGY	2 cut(s)	506, 1081
OliI	CACNNNNGTG	1 cut(s)	635
PagI	TCATGA	1 cut(s)	1163
PciI	ACATGT	1 cut(s)	502
PctI	GAATGC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	592
PfeI	GAWTC	3 cut(s)	282, 593, 649
PkrI	GCNGC	1 cut(s)	1037
PleI	GAGTC	3 cut(s)	396, 875, 1056
PpsI	GAGTC	3 cut(s)	396, 875, 1056
PscI	ACATGT	1 cut(s)	502
Psp6I	CCWGG	3 cut(s)	91, 644, 954
PspGI	CCWGG	3 cut(s)	91, 644, 954
PspN4I	GGNNCC	2 cut(s)	147, 902
PspPI	GGNCC	1 cut(s)	900
PstNI	CAGNNNCTG	1 cut(s)	1095
PvuII	CAGCTG	1 cut(s)	1038
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	3 cut(s)	80, 507, 635
SaqAI	TTAA	6 cut(s)	54, 195, 219, 287, 461, 489
SatI	GCNGC	1 cut(s)	1036
Sau3AI	GATC	5 cut(s)	165, 344, 373, 768, 817
Sau96I	GGNCC	1 cut(s)	900
SchI	GAGTC	3 cut(s)	397, 876, 1056
ScrFI	CCNGG	4 cut(s)	93, 385, 646, 956
SfaNI	GCATC	3 cut(s)	96, 925, 973
SfcI	CTRYAG	1 cut(s)	1072
SmiMI	CAYNNNNRTG	3 cut(s)	80, 507, 635
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	9 cut(s)	462, 574, 691, 775, 908, 995, 1008, 1029, 1104
SspMI	CTAG	2 cut(s)	803, 876
StyD4I	CCNGG	4 cut(s)	91, 383, 644, 954
TaaI	ACNGT	4 cut(s)	200, 236, 896, 1097
TaqI	TCGA	3 cut(s)	164, 434, 454
TasI	AATT	9 cut(s)	462, 574, 691, 775, 908, 995, 1008, 1029, 1104
TfiI	GAWTC	3 cut(s)	282, 593, 649
Tru1I	TTAA	6 cut(s)	54, 195, 219, 287, 461, 489
Tru9I	TTAA	6 cut(s)	54, 195, 219, 287, 461, 489
TscAI	CASTG	4 cut(s)	412, 637, 702, 937
TseFI	GTSAC	3 cut(s)	200, 517, 614
TseI	GCWGC	1 cut(s)	1035
Tsp45I	GTSAC	3 cut(s)	200, 517, 614
TspDTI	ATGAA	3 cut(s)	17, 42, 745
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	4 cut(s)	412, 637, 702, 937
Vha464I	CTTAAG	1 cut(s)	286
XapI	RAATTY	3 cut(s)	691, 908, 995
XceI	RCATGY	2 cut(s)	506, 1081
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XmiI	GTMKAC	2 cut(s)	641, 1071
XmnI	GAANNNNTTC	1 cut(s)	592
XspI	CTAG	2 cut(s)	803, 876
Zsp2I	ATGCAT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.