Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Reverse (-)

26789723 .. 26792254

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCATGTTCGCAGGGTTCAGATGATGAGAAAGGTGATGAGAGTGGTCATGCAACTGGGAGTCAGAATGAGAACCCCAGTGTCAATCCCAAATCTTCAGGAAACTCGAAAAATGCAAAGTTCTCTCGACATTTAATTATTTGCATTCAGAAGACTGCTTTTAAGGACAACTCACATGTAGGTGCATTTGTCACCGAGATATGCTCACGGATATCAAGTGCAAAAGGGAGGGATGGAAGATTTGAGAATTTGTTTATTAGAAAAGATTCAAGCTCTGCATACTTTAGTCACCTATTTGTGGGCACTGCTGTGTATACCAGGAATCGTTGTTTTCGTTTAGCTCTATCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTACTGGGCACTTCAAAACTAAGGACATGATGTCTGAAGAGGAGATGTTCATGGCGTCTTTGATCTGCAATTTGGAAGTTGATCGTGGGAAGCTTCTAGTCTGCAAATCTGATCTTGATTATAAATTCTTTCTTATGCAGGTCAACCCTAGTTTTGGAAAATCTTACAGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAGTGATGCTTCAGCAACAGACTTCCTGGGGAAATCTCCATTTCCAACTTTGGATGCATTTGTAGAATTTGGTGCTACAATTGGAAATGTCTCAGGTAAAATTCGCGGCTGGTATTGGTTCTCAAAGTTTGGAATCATGGTCTACAGCATGTCAAGAAACAGATACTGTGAGCGAATTGGCAGACAGCACAAAAGCAATCATGGTAAAGCCTATACATTGTATCTTATGCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

272

Amino Acids

30.36

Weight (kDa)

9.2

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
Acc36I	ACCTGC	1 cut(s)	508
AccI	GTMKAC	2 cut(s)	314, 723
AccII	CGCG	1 cut(s)	687
AciI	CCGC	1 cut(s)	687
AcsI	RAATTY	6 cut(s)	247, 364, 503, 560, 647, 681
AcuI	CTGAAG	3 cut(s)	81, 435, 576
AcyI	GRCGYC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	298, 533
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	270, 394, 571
AhdI	GACNNNNNGTC	1 cut(s)	409
AjnI	CCWGG	2 cut(s)	317, 606
AleI	CACNNNNGTG	1 cut(s)	308
AluBI	AGCT	3 cut(s)	273, 341, 472
AluI	AGCT	3 cut(s)	273, 341, 472
Alw26I	GTCTC	1 cut(s)	676
AlwNI	CAGNNNCTG	1 cut(s)	747
AoxI	GGCC	1 cut(s)	551
ApoI	RAATTY	6 cut(s)	247, 364, 503, 560, 647, 681
Asp700I	GAANNNNTTC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	552
AsuHPI	GGTGA	3 cut(s)	47, 184, 281
BaeGI	GKGCMC	2 cut(s)	305, 390
BbsI	GAAGAC	1 cut(s)	158
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	2 cut(s)	319, 608
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	2 cut(s)	476, 528
BfmI	CTRYAG	1 cut(s)	724
BfuAI	ACCTGC	1 cut(s)	508
BisI	GCNGC	1 cut(s)	688
BlsI	GCNGC	1 cut(s)	689
Bme1390I	CCNGG	2 cut(s)	319, 608
BmeRI	GACNNNNNGTC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	1 cut(s)	554
BmrFI	CCNGG	2 cut(s)	319, 608
BmrI	ACTGGG	3 cut(s)	66, 72, 393
BmsI	GCATC	2 cut(s)	577, 625
BmuI	ACTGGG	3 cut(s)	66, 72, 393
BpiI	GAAGAC	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 533
Bse1I	ACTGG	4 cut(s)	61, 78, 388, 582
BseBI	CCWGG	2 cut(s)	319, 608
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	2 cut(s)	238, 640
BseLI	CCNNNNNNNGG	2 cut(s)	298, 533
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	4 cut(s)	61, 78, 388, 582
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	2 cut(s)	305, 390
Bsh1236I	CGCG	1 cut(s)	687
BshFI	GGCC	1 cut(s)	553
BslI	CCNNNNNNNGG	2 cut(s)	298, 533
BsmAI	GTCTC	1 cut(s)	676
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	553
Bsp1286I	GDGCHC	2 cut(s)	305, 390
Bsp143I	GATC	3 cut(s)	441, 460, 490
BspACI	CCGC	1 cut(s)	687
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	1 cut(s)	686
BspFNI	CGCG	1 cut(s)	687
BspHI	TCATGA	1 cut(s)	815
BspLI	GGNNCC	1 cut(s)	554
BspMI	ACCTGC	1 cut(s)	508
BsrI	ACTGG	4 cut(s)	61, 78, 388, 582
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	3 cut(s)	441, 460, 490
BssNAI	GTATAC	1 cut(s)	315
BssNI	GRCGYC	1 cut(s)	434
Bst1107I	GTATAC	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	319, 608
Bst4CI	ACNGT	2 cut(s)	548, 749
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	399, 673
BstF5I	GGATG	2 cut(s)	238, 640
BstFNI	CGCG	1 cut(s)	687
BstKTI	GATC	3 cut(s)	444, 463, 493
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	3 cut(s)	441, 460, 490
BstNI	CCWGG	2 cut(s)	319, 608
BstNSI	RCATGY	3 cut(s)	9, 179, 733
BstSCI	CCNGG	2 cut(s)	317, 606
BstSFI	CTRYAG	1 cut(s)	724
BstSLI	GKGCMC	2 cut(s)	305, 390
BstUI	CGCG	1 cut(s)	687
BstV2I	GAAGAC	1 cut(s)	158
BstZ17I	GTATAC	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	553
BtsCI	GGATG	2 cut(s)	238, 640
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	4 cut(s)	85, 303, 375, 589
BveI	ACCTGC	1 cut(s)	508
CaiI	CAGNNNCTG	1 cut(s)	747
CciI	TCATGA	1 cut(s)	815
Cfr13I	GGNCC	1 cut(s)	552
CseI	GACGC	1 cut(s)	423
CviAII	CATG	9 cut(s)	6, 50, 176, 406, 430, 718, 730, 782, 816
CviJI	RGCY	6 cut(s)	273, 341, 472, 553, 690, 791
CviKI_1	RGCY	6 cut(s)	273, 341, 472, 553, 690, 791
DdeI	CTNAG	2 cut(s)	399, 673
DpnI	GATC	3 cut(s)	443, 462, 492
DpnII	GATC	3 cut(s)	441, 460, 490
DriI	GACNNNNNGTC	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	411
Eam1105I	GACNNNNNGTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	411
Eco32I	GATATC	1 cut(s)	213
Eco57I	CTGAAG	3 cut(s)	81, 435, 576
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	2 cut(s)	317, 606
EcoRV	GATATC	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	640
FaeI	CATG	9 cut(s)	9, 53, 179, 409, 433, 721, 733, 785, 819
FatI	CATG	9 cut(s)	5, 49, 175, 405, 429, 717, 729, 781, 815
FblI	GTMKAC	2 cut(s)	314, 723
Fnu4HI	GCNGC	1 cut(s)	688
FokI	GGATG	2 cut(s)	245, 647
Fsp4HI	GCNGC	1 cut(s)	688
FspBI	CTAG	2 cut(s)	476, 528
GluI	GCNGC	1 cut(s)	688
HaeIII	GGCC	1 cut(s)	553
HgaI	GACGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	9 cut(s)	9, 53, 179, 409, 433, 721, 733, 785, 819
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	4 cut(s)	61, 266, 322, 714
HphI	GGTGA	3 cut(s)	47, 184, 281
Hpy166II	GTNNAC	3 cut(s)	315, 523, 724
Hpy188I	TCNGA	5 cut(s)	22, 66, 150, 415, 490
Hpy188III	TCNNGA	5 cut(s)	99, 126, 494, 735, 816
Hpy8I	GTNNAC	3 cut(s)	315, 523, 724
HpyCH4III	ACNGT	2 cut(s)	548, 749
HpyF3I	CTNAG	2 cut(s)	399, 673
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	9 cut(s)	9, 53, 179, 409, 433, 721, 733, 785, 819
Kzo9I	GATC	3 cut(s)	441, 460, 490
LweI	GCATC	2 cut(s)	577, 625
MaeI	CTAG	2 cut(s)	476, 528
MaeIII	GTNAC	2 cut(s)	190, 287
MalI	GATC	3 cut(s)	443, 462, 492
MboI	GATC	3 cut(s)	441, 460, 490
MboII	GAAGA	5 cut(s)	87, 163, 249, 373, 428
MfeI	CAATTG	1 cut(s)	660
MhlI	GDGCHC	2 cut(s)	305, 390
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	650
MnlI	CCTC	2 cut(s)	222, 412
Mph1103I	ATGCAT	1 cut(s)	640
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	2 cut(s)	134, 162
MslI	CAYNNNNRTG	2 cut(s)	180, 308
MspR9I	CCNGG	2 cut(s)	319, 608
MunI	CAATTG	1 cut(s)	660
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	2 cut(s)	319, 608
MvnI	CGCG	1 cut(s)	687
NdeII	GATC	3 cut(s)	441, 460, 490
NlaIII	CATG	9 cut(s)	9, 53, 179, 409, 433, 721, 733, 785, 819
NlaIV	GGNNCC	1 cut(s)	554
NmuCI	GTSAC	2 cut(s)	190, 287
NsiI	ATGCAT	1 cut(s)	640
NspI	RCATGY	3 cut(s)	9, 179, 733
OliI	CACNNNNGTG	1 cut(s)	308
PagI	TCATGA	1 cut(s)	815
PciI	ACATGT	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	3 cut(s)	266, 322, 714
PkrI	GCNGC	1 cut(s)	689
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PscI	ACATGT	1 cut(s)	175
PsiI	TTATAA	1 cut(s)	501
Psp6I	CCWGG	2 cut(s)	317, 606
PspGI	CCWGG	2 cut(s)	317, 606
PspN4I	GGNNCC	1 cut(s)	554
PspPI	GGNCC	1 cut(s)	552
PstNI	CAGNNNCTG	1 cut(s)	747
RseI	CAYNNNNRTG	2 cut(s)	180, 308
SaqAI	TTAA	2 cut(s)	134, 162
SatI	GCNGC	1 cut(s)	688
Sau3AI	GATC	3 cut(s)	441, 460, 490
Sau96I	GGNCC	1 cut(s)	552
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	319, 608
SduI	GDGCHC	2 cut(s)	305, 390
SetI	ASST	9 cut(s)	37, 184, 275, 294, 343, 382, 474, 522, 679
SfaNI	GCATC	2 cut(s)	577, 625
SfcI	CTRYAG	1 cut(s)	724
SmiMI	CAYNNNNRTG	2 cut(s)	180, 308
SsiI	CCGC	1 cut(s)	687
SspMI	CTAG	2 cut(s)	476, 528
StyD4I	CCNGG	2 cut(s)	317, 606
TaaI	ACNGT	2 cut(s)	548, 749
TaqI	TCGA	2 cut(s)	107, 127
TauI	GCSGC	1 cut(s)	690
TfiI	GAWTC	3 cut(s)	266, 322, 714
Tru1I	TTAA	2 cut(s)	134, 162
Tru9I	TTAA	2 cut(s)	134, 162
TscAI	CASTG	4 cut(s)	85, 310, 375, 589
TseFI	GTSAC	2 cut(s)	190, 287
Tsp45I	GTSAC	2 cut(s)	190, 287
TspDTI	ATGAA	1 cut(s)	418
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	4 cut(s)	85, 310, 375, 589
XapI	RAATTY	6 cut(s)	247, 364, 503, 560, 647, 681
XceI	RCATGY	3 cut(s)	9, 179, 733
XmiI	GTMKAC	2 cut(s)	314, 723
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	2 cut(s)	476, 528
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.