DNA-directed primase polymerase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G52800 AT5G52800 AT5G52800 |
| fragaria_vesca | FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 |
| malus_domestica | MD01G1209800.v1.1 |
| prunus_persica | Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1 |
| pyrus_communis | pycom01g22030 |
| rosa_chinensis | RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461 |
| rosa_laevigata | RLG00000009952 RLG00000026431 |
| rosa_multiflora | Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00280420 Rroxscaffold_5G00373250 |
| rosa_rugosa | Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400 |
| rosa_samantha | Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800 |
| rosa_wichuraiana | Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 818, 1287 |
| Acc16I | TGCGCA | 1 cut(s) | 35 |
| Acc65I | GGTACC | 1 cut(s) | 881 |
| AccB1I | GGYRCC | 1 cut(s) | 881 |
| AccBSI | CCGCTC | 1 cut(s) | 527 |
| AccI | GTMKAC | 2 cut(s) | 97, 863 |
| AccIII | TCCGGA | 1 cut(s) | 502 |
| AciI | CCGC | 6 cut(s) | 54, 108, 196, 525, 597, 676 |
| AclWI | GGATC | 1 cut(s) | 965 |
| AcoI | YGGCCR | 1 cut(s) | 645 |
| AcsI | RAATTY | 4 cut(s) | 1132, 1289, 1346, 1433 |
| AcuI | CTGAAG | 3 cut(s) | 1053, 1257, 1362 |
| AcyI | GRCGYC | 1 cut(s) | 1256 |
| AfaI | GTAC | 5 cut(s) | 121, 149, 594, 754, 883 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 215, 344, 408, 1319 |
| AgsI | TTSAA | 4 cut(s) | 937, 1119, 1162, 1357 |
| AjnI | CCWGG | 2 cut(s) | 957, 1392 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 428, 460 |
| Alw26I | GTCTC | 4 cut(s) | 173, 254, 492, 1462 |
| AlwI | GGATC | 1 cut(s) | 965 |
| Aor13HI | TCCGGA | 1 cut(s) | 502 |
| AoxI | GGCC | 6 cut(s) | 329, 393, 399, 422, 645, 1337 |
| ApeKI | GCWGC | 1 cut(s) | 80 |
| ApoI | RAATTY | 4 cut(s) | 1132, 1289, 1346, 1433 |
| AseI | ATTAAT | 1 cut(s) | 155 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 498 |
| Asp718I | GGTACC | 1 cut(s) | 881 |
| AspLEI | GCGC | 2 cut(s) | 36, 1158 |
| AspS9I | GGNCC | 3 cut(s) | 400, 423, 1338 |
| AsuC2I | CCSGG | 1 cut(s) | 1030 |
| AsuHPI | GGTGA | 4 cut(s) | 74, 579, 718, 1019 |
| AsuII | TTCGAA | 1 cut(s) | 434 |
| BanI | GGYRCC | 1 cut(s) | 881 |
| BbsI | GAAGAC | 1 cut(s) | 259 |
| BbvI | GCAGC | 1 cut(s) | 92 |
| BccI | CCATC | 3 cut(s) | 518, 638, 893 |
| BceAI | ACGGC | 3 cut(s) | 660, 701, 964 |
| BciT130I | CCWGG | 2 cut(s) | 959, 1394 |
| BclI | TGATCA | 2 cut(s) | 465, 1207 |
| BcnI | CCSGG | 1 cut(s) | 1030 |
| BcoDI | GTCTC | 4 cut(s) | 173, 254, 492, 1462 |
| BfaI | CTAG | 8 cut(s) | 137, 144, 234, 383, 404, 408, 852, 1314 |
| BfmI | CTRYAG | 1 cut(s) | 342 |
| BfoI | RGCGCY | 1 cut(s) | 1159 |
| BisI | GCNGC | 1 cut(s) | 81 |
| BlpI | GCTNAGC | 1 cut(s) | 759 |
| BlsI | GCNGC | 1 cut(s) | 82 |
| Bme1390I | CCNGG | 3 cut(s) | 959, 1030, 1394 |
| BmgT120I | GGNCC | 3 cut(s) | 400, 423, 1338 |
| BmiI | GGNNCC | 3 cut(s) | 857, 883, 1340 |
| BmrFI | CCNGG | 3 cut(s) | 959, 1030, 1394 |
| BmrI | ACTGGG | 2 cut(s) | 1044, 1161 |
| BmsI | GCATC | 6 cut(s) | 55, 402, 660, 818, 1363, 1411 |
| BmuI | ACTGGG | 2 cut(s) | 1044, 1161 |
| BpiI | GAAGAC | 1 cut(s) | 259 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 759 |
| Bpu14I | TTCGAA | 1 cut(s) | 434 |
| BpuMI | CCSGG | 1 cut(s) | 1030 |
| Bsa29I | ATCGAT | 1 cut(s) | 812 |
| BsaBI | GATNNNNATC | 1 cut(s) | 818 |
| BsaHI | GRCGYC | 1 cut(s) | 1256 |
| BsaJI | CCNNGG | 6 cut(s) | 396, 642, 946, 958, 1392, 1393 |
| BsaWI | WCCGGW | 1 cut(s) | 502 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 215, 344, 408, 1319 |
| Bse118I | RCCGGY | 1 cut(s) | 577 |
| Bse1I | ACTGG | 4 cut(s) | 859, 1050, 1156, 1368 |
| Bse3DI | GCAATG | 1 cut(s) | 970 |
| Bse8I | GATNNNNATC | 1 cut(s) | 818 |
| BseAI | TCCGGA | 1 cut(s) | 502 |
| BseBI | CCWGG | 2 cut(s) | 959, 1394 |
| BseCI | ATCGAT | 1 cut(s) | 812 |
| BseDI | CCNNGG | 6 cut(s) | 396, 642, 946, 958, 1392, 1393 |
| BseGI | GGATG | 4 cut(s) | 304, 417, 630, 885 |
| BseJI | GATNNNNATC | 1 cut(s) | 818 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 215, 344, 408, 1319 |
| BseMI | GCAATG | 1 cut(s) | 970 |
| BseMII | CTCAG | 2 cut(s) | 750, 1473 |
| BseNI | ACTGG | 4 cut(s) | 859, 1050, 1156, 1368 |
| BseRI | GAGGAG | 4 cut(s) | 297, 553, 607, 816 |
| BseXI | GCAGC | 1 cut(s) | 92 |
| BshFI | GGCC | 6 cut(s) | 331, 395, 401, 424, 647, 1339 |
| BshNI | GGYRCC | 1 cut(s) | 881 |
| BshVI | ATCGAT | 1 cut(s) | 812 |
| BsiSI | CCGG | 3 cut(s) | 503, 578, 1029 |
| BslFI | GGGAC | 1 cut(s) | 320 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 215, 344, 408, 1319 |
| BsmAI | GTCTC | 4 cut(s) | 173, 254, 492, 1462 |
| BsmFI | GGGAC | 1 cut(s) | 320 |
| BsmI | GAATGC | 1 cut(s) | 378 |
| BsnI | GGCC | 6 cut(s) | 331, 395, 401, 424, 647, 1339 |
| Bsp119I | TTCGAA | 1 cut(s) | 434 |
| Bsp13I | TCCGGA | 1 cut(s) | 502 |
| Bsp1407I | TGTACA | 1 cut(s) | 752 |
| Bsp143I | GATC | 5 cut(s) | 220, 465, 970, 1207, 1263 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 759 |
| Bsp19I | CCATGG | 1 cut(s) | 396 |
| BspACI | CCGC | 6 cut(s) | 54, 108, 196, 525, 597, 676 |
| BspANI | GGCC | 6 cut(s) | 331, 395, 401, 424, 647, 1339 |
| BspCNI | CTCAG | 2 cut(s) | 751, 1472 |
| BspDI | ATCGAT | 1 cut(s) | 812 |
| BspEI | TCCGGA | 1 cut(s) | 502 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspLI | GGNNCC | 3 cut(s) | 857, 883, 1340 |
| BspPI | GGATC | 1 cut(s) | 965 |
| BspQI | GCTCTTC | 1 cut(s) | 1233 |
| BspT104I | TTCGAA | 1 cut(s) | 434 |
| BspT107I | GGYRCC | 1 cut(s) | 881 |
| BsrBI | CCGCTC | 1 cut(s) | 527 |
| BsrDI | GCAATG | 1 cut(s) | 970 |
| BsrFI | RCCGGY | 1 cut(s) | 577 |
| BsrGI | TGTACA | 1 cut(s) | 752 |
| BsrI | ACTGG | 4 cut(s) | 859, 1050, 1156, 1368 |
| BssAI | RCCGGY | 1 cut(s) | 577 |
| BssECI | CCNNGG | 6 cut(s) | 396, 642, 946, 958, 1392, 1393 |
| BssMI | GATC | 5 cut(s) | 220, 465, 970, 1207, 1263 |
| BssNAI | GTATAC | 1 cut(s) | 864 |
| BssNI | GRCGYC | 1 cut(s) | 1256 |
| BssT1I | CCWWGG | 1 cut(s) | 396 |
| Bst1107I | GTATAC | 1 cut(s) | 864 |
| Bst2UI | CCWGG | 2 cut(s) | 959, 1394 |
| Bst4CI | ACNGT | 2 cut(s) | 265, 1334 |
| Bst6I | CTCTTC | 1 cut(s) | 1233 |
| BstACI | GRCGYC | 1 cut(s) | 1256 |
| BstAUI | TGTACA | 1 cut(s) | 752 |
| BstBI | TTCGAA | 1 cut(s) | 434 |
| BstC8I | GCNNGC | 3 cut(s) | 78, 601, 649 |
| BstDEI | CTNAG | 3 cut(s) | 759, 1167, 1459 |
| BstDSI | CCRYGG | 3 cut(s) | 396, 642, 946 |
| BstF5I | GGATG | 4 cut(s) | 304, 417, 630, 885 |
| BstH2I | RGCGCY | 1 cut(s) | 1159 |
| BstHHI | GCGC | 2 cut(s) | 36, 1158 |
| BstKTI | GATC | 5 cut(s) | 223, 468, 973, 1210, 1266 |
| BstMAI | GTCTC | 4 cut(s) | 173, 254, 492, 1462 |
| BstMBI | GATC | 5 cut(s) | 220, 465, 970, 1207, 1263 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 392, 421, 653, 1421 |
| BstNI | CCWGG | 2 cut(s) | 959, 1394 |
| BstNSI | RCATGY | 1 cut(s) | 80 |
| BstSCI | CCNGG | 3 cut(s) | 957, 1028, 1392 |
| BstSFI | CTRYAG | 1 cut(s) | 342 |
| BstV1I | GCAGC | 1 cut(s) | 92 |
| BstV2I | GAAGAC | 1 cut(s) | 259 |
| BstZ17I | GTATAC | 1 cut(s) | 864 |
| Bsu15I | ATCGAT | 1 cut(s) | 812 |
| BsuRI | GGCC | 6 cut(s) | 331, 395, 401, 424, 647, 1339 |
| BsuTUI | ATCGAT | 1 cut(s) | 812 |
| BtgI | CCRYGG | 3 cut(s) | 396, 642, 946 |
| BtgZI | GCGATG | 2 cut(s) | 496, 637 |
| BtsCI | GGATG | 4 cut(s) | 304, 417, 630, 885 |
| BtsIMutI | CAGTG | 3 cut(s) | 1057, 1143, 1375 |
| Cac8I | GCNNGC | 3 cut(s) | 78, 601, 649 |
| CciI | TCATGA | 1 cut(s) | 490 |
| CfoI | GCGC | 2 cut(s) | 36, 1158 |
| Cfr10I | RCCGGY | 1 cut(s) | 577 |
| Cfr13I | GGNCC | 3 cut(s) | 400, 423, 1338 |
| ClaI | ATCGAT | 1 cut(s) | 812 |
| CseI | GACGC | 1 cut(s) | 1245 |
| Csp6I | GTAC | 5 cut(s) | 120, 148, 593, 753, 882 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 355, 390 |
| CviAII | CATG | 7 cut(s) | 77, 353, 397, 491, 1022, 1174, 1252 |
| CviQI | GTAC | 5 cut(s) | 120, 148, 593, 753, 882 |
| DdeI | CTNAG | 3 cut(s) | 759, 1167, 1459 |
| DpnI | GATC | 5 cut(s) | 222, 467, 972, 1209, 1265 |
| DpnII | GATC | 5 cut(s) | 220, 465, 970, 1207, 1263 |
| EaeI | YGGCCR | 1 cut(s) | 645 |
| Eam1104I | CTCTTC | 1 cut(s) | 1233 |
| EarI | CTCTTC | 1 cut(s) | 1233 |
| EciI | GGCGGA | 1 cut(s) | 185 |
| Eco130I | CCWWGG | 1 cut(s) | 396 |
| Eco57I | CTGAAG | 3 cut(s) | 1053, 1257, 1362 |
| EcoRI | GAATTC | 1 cut(s) | 1132 |
| EcoRII | CCWGG | 2 cut(s) | 957, 1392 |
| EcoT14I | CCWWGG | 1 cut(s) | 396 |
| EcoT22I | ATGCAT | 1 cut(s) | 1426 |
| ErhI | CCWWGG | 1 cut(s) | 396 |
| FaeI | CATG | 7 cut(s) | 80, 356, 400, 494, 1025, 1177, 1255 |
| FaqI | GGGAC | 1 cut(s) | 320 |
| FatI | CATG | 7 cut(s) | 76, 352, 396, 490, 1021, 1173, 1251 |
| FauI | CCCGC | 2 cut(s) | 604, 683 |
| FbaI | TGATCA | 2 cut(s) | 465, 1207 |
| FblI | GTMKAC | 2 cut(s) | 97, 863 |
| Fnu4HI | GCNGC | 1 cut(s) | 81 |
| FokI | GGATG | 4 cut(s) | 311, 424, 617, 872 |
| Fsp4HI | GCNGC | 1 cut(s) | 81 |
| FspAI | RTGCGCAY | 1 cut(s) | 35 |
| FspBI | CTAG | 8 cut(s) | 137, 144, 234, 383, 404, 408, 852, 1314 |
| FspI | TGCGCA | 1 cut(s) | 35 |
| GlaI | GCGC | 2 cut(s) | 35, 1157 |
| GluI | GCNGC | 1 cut(s) | 81 |
| HaeII | RGCGCY | 1 cut(s) | 1159 |
| HaeIII | GGCC | 6 cut(s) | 331, 395, 401, 424, 647, 1339 |
| HapII | CCGG | 3 cut(s) | 503, 578, 1029 |
| HgaI | GACGC | 1 cut(s) | 1245 |
| HhaI | GCGC | 2 cut(s) | 36, 1158 |
| Hin1I | GRCGYC | 1 cut(s) | 1256 |
| Hin1II | CATG | 7 cut(s) | 80, 356, 400, 494, 1025, 1177, 1255 |
| Hin6I | GCGC | 2 cut(s) | 34, 1156 |
| HinP1I | GCGC | 2 cut(s) | 34, 1156 |
| HincII | GTYRAC | 1 cut(s) | 1309 |
| HindII | GTYRAC | 1 cut(s) | 1309 |
| HinfI | GANTC | 4 cut(s) | 181, 475, 789, 1033 |
| HpaII | CCGG | 3 cut(s) | 503, 578, 1029 |
| HphI | GGTGA | 4 cut(s) | 74, 579, 718, 1019 |
| Hpy166II | GTNNAC | 4 cut(s) | 98, 670, 864, 1309 |
| Hpy188I | TCNGA | 4 cut(s) | 924, 994, 1038, 1237 |
| Hpy188III | TCNNGA | 6 cut(s) | 19, 126, 472, 491, 503, 1071 |
| Hpy8I | GTNNAC | 4 cut(s) | 98, 670, 864, 1309 |
| Hpy99I | CGWCG | 2 cut(s) | 277, 722 |
| HpyAV | CCTTC | 6 cut(s) | 430, 526, 631, 667, 911, 998 |
| HpyCH4III | ACNGT | 2 cut(s) | 265, 1334 |
| HpyCH4IV | ACGT | 2 cut(s) | 168, 363 |
| HpyCH4V | TGCA | 8 cut(s) | 68, 80, 214, 1025, 1269, 1352, 1365, 1424 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 392, 421, 653, 1421 |
| HpyF3I | CTNAG | 3 cut(s) | 759, 1167, 1459 |
| HpySE526I | ACGT | 2 cut(s) | 168, 363 |
| Hsp92I | GRCGYC | 1 cut(s) | 1256 |
| Hsp92II | CATG | 7 cut(s) | 80, 356, 400, 494, 1025, 1177, 1255 |
| HspAI | GCGC | 2 cut(s) | 34, 1156 |
| Kpn2I | TCCGGA | 1 cut(s) | 502 |
| KpnI | GGTACC | 1 cut(s) | 885 |
| Ksp22I | TGATCA | 2 cut(s) | 465, 1207 |
| Kzo9I | GATC | 5 cut(s) | 220, 465, 970, 1207, 1263 |
| LguI | GCTCTTC | 1 cut(s) | 1233 |
| LmnI | GCTCC | 2 cut(s) | 855, 904 |
| Lsp1109I | GCAGC | 1 cut(s) | 92 |
| LweI | GCATC | 6 cut(s) | 55, 402, 660, 818, 1363, 1411 |
| MaeI | CTAG | 8 cut(s) | 137, 144, 234, 383, 404, 408, 852, 1314 |
| MaeII | ACGT | 2 cut(s) | 168, 363 |
| MaeIII | GTNAC | 3 cut(s) | 139, 248, 387 |
| MalI | GATC | 5 cut(s) | 222, 467, 972, 1209, 1265 |
| MbiI | CCGCTC | 1 cut(s) | 527 |
| MboI | GATC | 5 cut(s) | 220, 465, 970, 1207, 1263 |
| MboII | GAAGA | 7 cut(s) | 259, 491, 926, 1059, 1107, 1141, 1250 |
| MlyI | GAGTC | 3 cut(s) | 175, 469, 1042 |
| MmeI | TCCRAC | 3 cut(s) | 151, 209, 1249 |
| Mph1103I | ATGCAT | 1 cut(s) | 1426 |
| MroI | TCCGGA | 1 cut(s) | 502 |
| MroXI | GAANNNNTTC | 1 cut(s) | 498 |
| MseI | TTAA | 8 cut(s) | 131, 155, 203, 278, 557, 696, 765, 1188 |
| MslI | CAYNNNNRTG | 1 cut(s) | 255 |
| MspA1I | CMGCKG | 1 cut(s) | 758 |
| MspI | CCGG | 3 cut(s) | 503, 578, 1029 |
| MspR9I | CCNGG | 3 cut(s) | 959, 1030, 1394 |
| Mva1269I | GAATGC | 1 cut(s) | 378 |
| MvaI | CCWGG | 2 cut(s) | 959, 1394 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 392, 421, 653, 1421 |
| NciI | CCSGG | 1 cut(s) | 1030 |
| NcoI | CCATGG | 1 cut(s) | 396 |
| NdeII | GATC | 5 cut(s) | 220, 465, 970, 1207, 1263 |
| NlaIII | CATG | 7 cut(s) | 80, 356, 400, 494, 1025, 1177, 1255 |
| NlaIV | GGNNCC | 3 cut(s) | 857, 883, 1340 |
| NmuCI | GTSAC | 2 cut(s) | 139, 248 |
| NsbI | TGCGCA | 1 cut(s) | 35 |
| NsiI | ATGCAT | 1 cut(s) | 1426 |
| NspI | RCATGY | 1 cut(s) | 80 |
| NspV | TTCGAA | 1 cut(s) | 434 |
| PaeI | GCATGC | 1 cut(s) | 80 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PasI | CCCWGGG | 1 cut(s) | 1393 |
| PciSI | GCTCTTC | 1 cut(s) | 1233 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1099 |
| PctI | GAATGC | 1 cut(s) | 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 498 |
| PfeI | GAWTC | 1 cut(s) | 789 |
| PkrI | GCNGC | 1 cut(s) | 82 |
| PleI | GAGTC | 3 cut(s) | 175, 469, 1041 |
| PpsI | GAGTC | 3 cut(s) | 175, 469, 1041 |
| PshBI | ATTAAT | 1 cut(s) | 155 |
| PsiI | TTATAA | 2 cut(s) | 818, 1287 |
| Psp6I | CCWGG | 2 cut(s) | 957, 1392 |
| PspGI | CCWGG | 2 cut(s) | 957, 1392 |
| PspN4I | GGNNCC | 3 cut(s) | 857, 883, 1340 |
| PspPI | GGNCC | 3 cut(s) | 400, 423, 1338 |
| PvuII | CAGCTG | 1 cut(s) | 758 |
| RsaI | GTAC | 5 cut(s) | 121, 149, 594, 754, 883 |
| RsaNI | GTAC | 5 cut(s) | 120, 148, 593, 753, 882 |
| RseI | CAYNNNNRTG | 1 cut(s) | 255 |
| SapI | GCTCTTC | 1 cut(s) | 1233 |
| SaqAI | TTAA | 8 cut(s) | 131, 155, 203, 278, 557, 696, 765, 1188 |
| SatI | GCNGC | 1 cut(s) | 81 |
| Sau3AI | GATC | 5 cut(s) | 220, 465, 970, 1207, 1263 |
| Sau96I | GGNCC | 3 cut(s) | 400, 423, 1338 |
| SchI | GAGTC | 3 cut(s) | 175, 469, 1042 |
| ScrFI | CCNGG | 3 cut(s) | 959, 1030, 1394 |
| SfaNI | GCATC | 6 cut(s) | 55, 402, 660, 818, 1363, 1411 |
| SfcI | CTRYAG | 1 cut(s) | 342 |
| SfuI | TTCGAA | 1 cut(s) | 434 |
| SgrAI | CRCCGGYG | 1 cut(s) | 577 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 255 |
| SphI | GCATGC | 1 cut(s) | 80 |
| SsiI | CCGC | 6 cut(s) | 54, 108, 196, 525, 597, 676 |
| SspMI | CTAG | 8 cut(s) | 137, 144, 234, 383, 404, 408, 852, 1314 |
| StyD4I | CCNGG | 3 cut(s) | 957, 1028, 1392 |
| StyI | CCWWGG | 1 cut(s) | 396 |
| TaaI | ACNGT | 2 cut(s) | 265, 1334 |
| TaiI | ACGT | 2 cut(s) | 171, 366 |
| TaqI | TCGA | 4 cut(s) | 434, 812, 1079, 1419 |
| TatI | WGTACW | 1 cut(s) | 752 |
| TfiI | GAWTC | 1 cut(s) | 789 |
| Tru1I | TTAA | 8 cut(s) | 131, 155, 203, 278, 557, 696, 765, 1188 |
| Tru9I | TTAA | 8 cut(s) | 131, 155, 203, 278, 557, 696, 765, 1188 |
| TscAI | CASTG | 3 cut(s) | 1057, 1143, 1375 |
| TseFI | GTSAC | 2 cut(s) | 139, 248 |
| TseI | GCWGC | 1 cut(s) | 80 |
| Tsp45I | GTSAC | 2 cut(s) | 139, 248 |
| TspDTI | ATGAA | 2 cut(s) | 507, 1240 |
| TspGWI | ACGGA | 1 cut(s) | 655 |
| TspRI | CASTG | 3 cut(s) | 1057, 1143, 1375 |
| VspI | ATTAAT | 1 cut(s) | 155 |
| XapI | RAATTY | 4 cut(s) | 1132, 1289, 1346, 1433 |
| XceI | RCATGY | 1 cut(s) | 80 |
| XmiI | GTMKAC | 2 cut(s) | 97, 863 |
| XmnI | GAANNNNTTC | 1 cut(s) | 498 |
| XspI | CTAG | 8 cut(s) | 137, 144, 234, 383, 404, 408, 852, 1314 |
| Zsp2I | ATGCAT | 1 cut(s) | 1426 |