Rmu_sc0000016.1_g000027

DNA-directed primase polymerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000016.1
Physical Location & Seq
Reverse (-)
148138 .. 153264
5127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000016.1_g000027.1.cds

Sequence Viewer

Length: 1476 bp
atgactactatgatagtctggacattggtaatgcgcaccaatctccttatatccgcttggggtgatgcaatatcgcatgcagctatgctaattcgtctacgacctaccgccactcaatgtacctctggattaaagctagtgactaggtacaaattaatggacaactacgttggatttgagactccaacaatcgtccgccacttaatgcccttgcaaggcgatctcattactgctagatttgagggttgtcactttgatgagacagtcttcccgtcgttaagaggagataagaacaaggatgttcagcaggaacgacaggaattgtcgtggcctgtccccactataggtaggcatggtgctaacgtcaaagagagtggcattctagcgttacaggccatggccctagctaggatgcgtgggaggcccgtaggttcgaaggacactttggcacattccaatcctttgatcatcaagactcaaaatctgtctcatgaaaatcttccggacaccatcgccttcctctccgctcactccctctactatctctctctctcattaacctcctccaccacctcgccggtgctatcacctgtacccgcaagctctctctctctctcctccttcctctccatccctctttccacggccagcatcgccttcctctccgttcactcccgctactatctctctctcattaaccacctccaccacctcgccgtcgctatcacctatttgagatgtaaaggaggttgtacagctgagcttaaaatgtccttgttccagcttggaatcagtcctcaaattatagcatcgattataatcactcctccctctgttcttttgcgaaaggctaggagccagtatacttggaaagggtttggtaccatccctaatgctttacaggagctaaaggaagaaggtctgaaagagaacttcaatactttccacggcaatttccagggcaatgatgatccaaaatgttcgcagggttcagatgatgaggaaggtgatgagagtggtcatgcaaccgggagtcagaatgagaaccccagtgtcaatcccaaatcttcaggaaactcgaaaaatggaaatcgttgttttcgtttagctctatcttcaaaggcagggaagaattcagtgcttctacctactgggcgcttcaaaactaaggacatgatgtgcttctttaactatgatatatcgtatgatcaaagttatggtttccaacagcagtctgaagagcagatgttcatggcgtctttgatctgcaatttggaagttgattataaattctttcttatggaggtcaaccctagttttggaaaatcttacagttggccccaagaatttgcattgaatggttgcaccagtgatgcttcagcaacatactccctggggaaatctccatttccagctttcgatgcatttgtagaatttgttgctaccattggaaatgtctcaggtgctaacttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

491

Amino Acids

54.04

Weight (kDa)

7.62

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 818, 1287
Acc16I TGCGCA 1 cut(s) 35
Acc65I GGTACC 1 cut(s) 881
AccB1I GGYRCC 1 cut(s) 881
AccBSI CCGCTC 1 cut(s) 527
AccI GTMKAC 2 cut(s) 97, 863
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 6 cut(s) 54, 108, 196, 525, 597, 676
AclWI GGATC 1 cut(s) 965
AcoI YGGCCR 1 cut(s) 645
AcsI RAATTY 4 cut(s) 1132, 1289, 1346, 1433
AcuI CTGAAG 3 cut(s) 1053, 1257, 1362
AcyI GRCGYC 1 cut(s) 1256
AfaI GTAC 5 cut(s) 121, 149, 594, 754, 883
AfiI CCNNNNNNNGG 4 cut(s) 215, 344, 408, 1319
AgsI TTSAA 4 cut(s) 937, 1119, 1162, 1357
AjnI CCWGG 2 cut(s) 957, 1392
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
Alw26I GTCTC 4 cut(s) 173, 254, 492, 1462
AlwI GGATC 1 cut(s) 965
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 6 cut(s) 329, 393, 399, 422, 645, 1337
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 4 cut(s) 1132, 1289, 1346, 1433
AseI ATTAAT 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 498
Asp718I GGTACC 1 cut(s) 881
AspLEI GCGC 2 cut(s) 36, 1158
AspS9I GGNCC 3 cut(s) 400, 423, 1338
AsuC2I CCSGG 1 cut(s) 1030
AsuHPI GGTGA 4 cut(s) 74, 579, 718, 1019
AsuII TTCGAA 1 cut(s) 434
BanI GGYRCC 1 cut(s) 881
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 92
BccI CCATC 3 cut(s) 518, 638, 893
BceAI ACGGC 3 cut(s) 660, 701, 964
BciT130I CCWGG 2 cut(s) 959, 1394
BclI TGATCA 2 cut(s) 465, 1207
BcnI CCSGG 1 cut(s) 1030
BcoDI GTCTC 4 cut(s) 173, 254, 492, 1462
BfaI CTAG 8 cut(s) 137, 144, 234, 383, 404, 408, 852, 1314
BfmI CTRYAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 1159
BisI GCNGC 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 759
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 959, 1030, 1394
BmgT120I GGNCC 3 cut(s) 400, 423, 1338
BmiI GGNNCC 3 cut(s) 857, 883, 1340
BmrFI CCNGG 3 cut(s) 959, 1030, 1394
BmrI ACTGGG 2 cut(s) 1044, 1161
BmsI GCATC 6 cut(s) 55, 402, 660, 818, 1363, 1411
BmuI ACTGGG 2 cut(s) 1044, 1161
BpiI GAAGAC 1 cut(s) 259
Bpu1102I GCTNAGC 1 cut(s) 759
Bpu14I TTCGAA 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 1030
Bsa29I ATCGAT 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 818
BsaHI GRCGYC 1 cut(s) 1256
BsaJI CCNNGG 6 cut(s) 396, 642, 946, 958, 1392, 1393
BsaWI WCCGGW 1 cut(s) 502
Bsc4I CCNNNNNNNGG 4 cut(s) 215, 344, 408, 1319
Bse118I RCCGGY 1 cut(s) 577
Bse1I ACTGG 4 cut(s) 859, 1050, 1156, 1368
Bse3DI GCAATG 1 cut(s) 970
Bse8I GATNNNNATC 1 cut(s) 818
BseAI TCCGGA 1 cut(s) 502
BseBI CCWGG 2 cut(s) 959, 1394
BseCI ATCGAT 1 cut(s) 812
BseDI CCNNGG 6 cut(s) 396, 642, 946, 958, 1392, 1393
BseGI GGATG 4 cut(s) 304, 417, 630, 885
BseJI GATNNNNATC 1 cut(s) 818
BseLI CCNNNNNNNGG 4 cut(s) 215, 344, 408, 1319
BseMI GCAATG 1 cut(s) 970
BseMII CTCAG 2 cut(s) 750, 1473
BseNI ACTGG 4 cut(s) 859, 1050, 1156, 1368
BseRI GAGGAG 4 cut(s) 297, 553, 607, 816
BseXI GCAGC 1 cut(s) 92
BshFI GGCC 6 cut(s) 331, 395, 401, 424, 647, 1339
BshNI GGYRCC 1 cut(s) 881
BshVI ATCGAT 1 cut(s) 812
BsiSI CCGG 3 cut(s) 503, 578, 1029
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 4 cut(s) 215, 344, 408, 1319
BsmAI GTCTC 4 cut(s) 173, 254, 492, 1462
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 6 cut(s) 331, 395, 401, 424, 647, 1339
Bsp119I TTCGAA 1 cut(s) 434
Bsp13I TCCGGA 1 cut(s) 502
Bsp1407I TGTACA 1 cut(s) 752
Bsp143I GATC 5 cut(s) 220, 465, 970, 1207, 1263
Bsp1720I GCTNAGC 1 cut(s) 759
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 6 cut(s) 54, 108, 196, 525, 597, 676
BspANI GGCC 6 cut(s) 331, 395, 401, 424, 647, 1339
BspCNI CTCAG 2 cut(s) 751, 1472
BspDI ATCGAT 1 cut(s) 812
BspEI TCCGGA 1 cut(s) 502
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 857, 883, 1340
BspPI GGATC 1 cut(s) 965
BspQI GCTCTTC 1 cut(s) 1233
BspT104I TTCGAA 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 881
BsrBI CCGCTC 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 970
BsrFI RCCGGY 1 cut(s) 577
BsrGI TGTACA 1 cut(s) 752
BsrI ACTGG 4 cut(s) 859, 1050, 1156, 1368
BssAI RCCGGY 1 cut(s) 577
BssECI CCNNGG 6 cut(s) 396, 642, 946, 958, 1392, 1393
BssMI GATC 5 cut(s) 220, 465, 970, 1207, 1263
BssNAI GTATAC 1 cut(s) 864
BssNI GRCGYC 1 cut(s) 1256
BssT1I CCWWGG 1 cut(s) 396
Bst1107I GTATAC 1 cut(s) 864
Bst2UI CCWGG 2 cut(s) 959, 1394
Bst4CI ACNGT 2 cut(s) 265, 1334
Bst6I CTCTTC 1 cut(s) 1233
BstACI GRCGYC 1 cut(s) 1256
BstAUI TGTACA 1 cut(s) 752
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 3 cut(s) 78, 601, 649
BstDEI CTNAG 3 cut(s) 759, 1167, 1459
BstDSI CCRYGG 3 cut(s) 396, 642, 946
BstF5I GGATG 4 cut(s) 304, 417, 630, 885
BstH2I RGCGCY 1 cut(s) 1159
BstHHI GCGC 2 cut(s) 36, 1158
BstKTI GATC 5 cut(s) 223, 468, 973, 1210, 1266
BstMAI GTCTC 4 cut(s) 173, 254, 492, 1462
BstMBI GATC 5 cut(s) 220, 465, 970, 1207, 1263
BstMWI GCNNNNNNNGC 4 cut(s) 392, 421, 653, 1421
BstNI CCWGG 2 cut(s) 959, 1394
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 3 cut(s) 957, 1028, 1392
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 259
BstZ17I GTATAC 1 cut(s) 864
Bsu15I ATCGAT 1 cut(s) 812
BsuRI GGCC 6 cut(s) 331, 395, 401, 424, 647, 1339
BsuTUI ATCGAT 1 cut(s) 812
BtgI CCRYGG 3 cut(s) 396, 642, 946
BtgZI GCGATG 2 cut(s) 496, 637
BtsCI GGATG 4 cut(s) 304, 417, 630, 885
BtsIMutI CAGTG 3 cut(s) 1057, 1143, 1375
Cac8I GCNNGC 3 cut(s) 78, 601, 649
CciI TCATGA 1 cut(s) 490
CfoI GCGC 2 cut(s) 36, 1158
Cfr10I RCCGGY 1 cut(s) 577
Cfr13I GGNCC 3 cut(s) 400, 423, 1338
ClaI ATCGAT 1 cut(s) 812
CseI GACGC 1 cut(s) 1245
Csp6I GTAC 5 cut(s) 120, 148, 593, 753, 882
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 7 cut(s) 77, 353, 397, 491, 1022, 1174, 1252
CviQI GTAC 5 cut(s) 120, 148, 593, 753, 882
DdeI CTNAG 3 cut(s) 759, 1167, 1459
DpnI GATC 5 cut(s) 222, 467, 972, 1209, 1265
DpnII GATC 5 cut(s) 220, 465, 970, 1207, 1263
EaeI YGGCCR 1 cut(s) 645
Eam1104I CTCTTC 1 cut(s) 1233
EarI CTCTTC 1 cut(s) 1233
EciI GGCGGA 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 396
Eco57I CTGAAG 3 cut(s) 1053, 1257, 1362
EcoRI GAATTC 1 cut(s) 1132
EcoRII CCWGG 2 cut(s) 957, 1392
EcoT14I CCWWGG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 1426
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 7 cut(s) 80, 356, 400, 494, 1025, 1177, 1255
FaqI GGGAC 1 cut(s) 320
FatI CATG 7 cut(s) 76, 352, 396, 490, 1021, 1173, 1251
FauI CCCGC 2 cut(s) 604, 683
FbaI TGATCA 2 cut(s) 465, 1207
FblI GTMKAC 2 cut(s) 97, 863
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 4 cut(s) 311, 424, 617, 872
Fsp4HI GCNGC 1 cut(s) 81
FspAI RTGCGCAY 1 cut(s) 35
FspBI CTAG 8 cut(s) 137, 144, 234, 383, 404, 408, 852, 1314
FspI TGCGCA 1 cut(s) 35
GlaI GCGC 2 cut(s) 35, 1157
GluI GCNGC 1 cut(s) 81
HaeII RGCGCY 1 cut(s) 1159
HaeIII GGCC 6 cut(s) 331, 395, 401, 424, 647, 1339
HapII CCGG 3 cut(s) 503, 578, 1029
HgaI GACGC 1 cut(s) 1245
HhaI GCGC 2 cut(s) 36, 1158
Hin1I GRCGYC 1 cut(s) 1256
Hin1II CATG 7 cut(s) 80, 356, 400, 494, 1025, 1177, 1255
Hin6I GCGC 2 cut(s) 34, 1156
HinP1I GCGC 2 cut(s) 34, 1156
HincII GTYRAC 1 cut(s) 1309
HindII GTYRAC 1 cut(s) 1309
HinfI GANTC 4 cut(s) 181, 475, 789, 1033
HpaII CCGG 3 cut(s) 503, 578, 1029
HphI GGTGA 4 cut(s) 74, 579, 718, 1019
Hpy166II GTNNAC 4 cut(s) 98, 670, 864, 1309
Hpy188I TCNGA 4 cut(s) 924, 994, 1038, 1237
Hpy188III TCNNGA 6 cut(s) 19, 126, 472, 491, 503, 1071
Hpy8I GTNNAC 4 cut(s) 98, 670, 864, 1309
Hpy99I CGWCG 2 cut(s) 277, 722
HpyAV CCTTC 6 cut(s) 430, 526, 631, 667, 911, 998
HpyCH4III ACNGT 2 cut(s) 265, 1334
HpyCH4IV ACGT 2 cut(s) 168, 363
HpyCH4V TGCA 8 cut(s) 68, 80, 214, 1025, 1269, 1352, 1365, 1424
HpyF10VI GCNNNNNNNGC 4 cut(s) 392, 421, 653, 1421
HpyF3I CTNAG 3 cut(s) 759, 1167, 1459
HpySE526I ACGT 2 cut(s) 168, 363
Hsp92I GRCGYC 1 cut(s) 1256
Hsp92II CATG 7 cut(s) 80, 356, 400, 494, 1025, 1177, 1255
HspAI GCGC 2 cut(s) 34, 1156
Kpn2I TCCGGA 1 cut(s) 502
KpnI GGTACC 1 cut(s) 885
Ksp22I TGATCA 2 cut(s) 465, 1207
Kzo9I GATC 5 cut(s) 220, 465, 970, 1207, 1263
LguI GCTCTTC 1 cut(s) 1233
LmnI GCTCC 2 cut(s) 855, 904
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 6 cut(s) 55, 402, 660, 818, 1363, 1411
MaeI CTAG 8 cut(s) 137, 144, 234, 383, 404, 408, 852, 1314
MaeII ACGT 2 cut(s) 168, 363
MaeIII GTNAC 3 cut(s) 139, 248, 387
MalI GATC 5 cut(s) 222, 467, 972, 1209, 1265
MbiI CCGCTC 1 cut(s) 527
MboI GATC 5 cut(s) 220, 465, 970, 1207, 1263
MboII GAAGA 7 cut(s) 259, 491, 926, 1059, 1107, 1141, 1250
MlyI GAGTC 3 cut(s) 175, 469, 1042
MmeI TCCRAC 3 cut(s) 151, 209, 1249
Mph1103I ATGCAT 1 cut(s) 1426
MroI TCCGGA 1 cut(s) 502
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 8 cut(s) 131, 155, 203, 278, 557, 696, 765, 1188
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 3 cut(s) 503, 578, 1029
MspR9I CCNGG 3 cut(s) 959, 1030, 1394
Mva1269I GAATGC 1 cut(s) 378
MvaI CCWGG 2 cut(s) 959, 1394
MwoI GCNNNNNNNGC 4 cut(s) 392, 421, 653, 1421
NciI CCSGG 1 cut(s) 1030
NcoI CCATGG 1 cut(s) 396
NdeII GATC 5 cut(s) 220, 465, 970, 1207, 1263
NlaIII CATG 7 cut(s) 80, 356, 400, 494, 1025, 1177, 1255
NlaIV GGNNCC 3 cut(s) 857, 883, 1340
NmuCI GTSAC 2 cut(s) 139, 248
NsbI TGCGCA 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 1426
NspI RCATGY 1 cut(s) 80
NspV TTCGAA 1 cut(s) 434
PaeI GCATGC 1 cut(s) 80
PagI TCATGA 1 cut(s) 490
PasI CCCWGGG 1 cut(s) 1393
PciSI GCTCTTC 1 cut(s) 1233
PcsI WCGNNNNNNNCGW 1 cut(s) 1099
PctI GAATGC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 789
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 3 cut(s) 175, 469, 1041
PpsI GAGTC 3 cut(s) 175, 469, 1041
PshBI ATTAAT 1 cut(s) 155
PsiI TTATAA 2 cut(s) 818, 1287
Psp6I CCWGG 2 cut(s) 957, 1392
PspGI CCWGG 2 cut(s) 957, 1392
PspN4I GGNNCC 3 cut(s) 857, 883, 1340
PspPI GGNCC 3 cut(s) 400, 423, 1338
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 5 cut(s) 121, 149, 594, 754, 883
RsaNI GTAC 5 cut(s) 120, 148, 593, 753, 882
RseI CAYNNNNRTG 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 1233
SaqAI TTAA 8 cut(s) 131, 155, 203, 278, 557, 696, 765, 1188
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 5 cut(s) 220, 465, 970, 1207, 1263
Sau96I GGNCC 3 cut(s) 400, 423, 1338
SchI GAGTC 3 cut(s) 175, 469, 1042
ScrFI CCNGG 3 cut(s) 959, 1030, 1394
SfaNI GCATC 6 cut(s) 55, 402, 660, 818, 1363, 1411
SfcI CTRYAG 1 cut(s) 342
SfuI TTCGAA 1 cut(s) 434
SgrAI CRCCGGYG 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 255
SphI GCATGC 1 cut(s) 80
SsiI CCGC 6 cut(s) 54, 108, 196, 525, 597, 676
SspMI CTAG 8 cut(s) 137, 144, 234, 383, 404, 408, 852, 1314
StyD4I CCNGG 3 cut(s) 957, 1028, 1392
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 265, 1334
TaiI ACGT 2 cut(s) 171, 366
TaqI TCGA 4 cut(s) 434, 812, 1079, 1419
TatI WGTACW 1 cut(s) 752
TfiI GAWTC 1 cut(s) 789
Tru1I TTAA 8 cut(s) 131, 155, 203, 278, 557, 696, 765, 1188
Tru9I TTAA 8 cut(s) 131, 155, 203, 278, 557, 696, 765, 1188
TscAI CASTG 3 cut(s) 1057, 1143, 1375
TseFI GTSAC 2 cut(s) 139, 248
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 2 cut(s) 139, 248
TspDTI ATGAA 2 cut(s) 507, 1240
TspGWI ACGGA 1 cut(s) 655
TspRI CASTG 3 cut(s) 1057, 1143, 1375
VspI ATTAAT 1 cut(s) 155
XapI RAATTY 4 cut(s) 1132, 1289, 1346, 1433
XceI RCATGY 1 cut(s) 80
XmiI GTMKAC 2 cut(s) 97, 863
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 8 cut(s) 137, 144, 234, 383, 404, 408, 852, 1314
Zsp2I ATGCAT 1 cut(s) 1426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.