Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Reverse (-)

54522072 .. 54525432

Gene Structure 3361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAGAATCCGACCGTCGGATTTTCATAAAATTATATGGAGATGTTATAAGGACGATTTGGGGAAGATCCGACCATTGGATCTTCATGATAAAGTTTGGAGGATGATCTTAAGGGCGATGCGTGAGGATCCGACCGTTAGATCATCGTTTAATTTCGATCCGACCGTGACTGATGGTTTGAGATGGTGGACGATCGTGGATTGTATTTTGGGCTGCTATGAAGACGCAGCGGGATTTGAGGAAGAGGGTCTGAAAGAGAACTTCAATACTATCCACGGCAATTTCCAGGGCAATGATGATCCAAAAATATGCTCACGGATATCAAGTGCAAAAGGGAGGGATGGAAGATTTGAGAATTTGTTTATTAGAAAAGATTCCAGCTCTGCATACTTTAGTCACCTATTTGTGGACACTGCTGTGTATACCAGGAATCGTTGTTTTCGTTTAGCTCTATCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTACTGGGCGCTTCAAAACTAAGGACATGATGCAGTTTGAAGAGGAGATGTTCATGGCGTCTTTGATCTGCAATTTGGAAGTTGATTGTGGGAAGCTTCTAGTCTGCAAATCTGATCTTGATTGTATAAAGACCCTGCATTCTGATACACAGAGGTATATTAGAGTCAACCCTAGTTTTGGAAAATCTTACAGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAGTGATGCTTCAGCAACATACTTCCTGGGGAAATCTCCATTTCCAACTTTGGATGCATTTGTAGAATTTGTTGCTACAATTGGAAATGTCTCAGCTGGTATTGGTTCTCAGAGTTTGGACTCATGGTCTACAGCATGTCAAGAAACAGATACTGTGAGCGAATTGGCAGACAGCACAAAAGCAATCATGAGTGGCAATCTATTCCTTGATGCAAATGTTGTTCCGATCAACCAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

317

Amino Acids

35.75

Weight (kDa)

5.81

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
AccI	GTMKAC	2 cut(s)	422, 842
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	6 cut(s)	61, 87, 122, 135, 152, 293
AcsI	RAATTY	4 cut(s)	355, 472, 692, 779
AcuI	CTGAAG	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	545
AfiI	CCNNNNNNNGG	4 cut(s)	16, 76, 406, 665
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	4 cut(s)	265, 502, 527, 703
AhdI	GACNNNNNGTC	1 cut(s)	838
AjnI	CCWGG	3 cut(s)	285, 425, 738
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	4 cut(s)	381, 449, 583, 809
AluI	AGCT	4 cut(s)	381, 449, 583, 809
Alw26I	GTCTC	1 cut(s)	808
AlwI	GGATC	6 cut(s)	61, 87, 122, 135, 152, 293
AlwNI	CAGNNNCTG	1 cut(s)	866
AoxI	GGCC	1 cut(s)	683
ApeKI	GCWGC	2 cut(s)	213, 227
ApoI	RAATTY	4 cut(s)	355, 472, 692, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
Asp700I	GAANNNNTTC	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	684
AsuHPI	GGTGA	1 cut(s)	389
BamHI	GGATCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	200, 239
BccI	CCATC	3 cut(s)	167, 177, 335
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	3 cut(s)	287, 427, 740
BcoDI	GTCTC	1 cut(s)	808
BfaI	CTAG	2 cut(s)	587, 660
BfmI	CTRYAG	1 cut(s)	843
BfoI	RGCGCY	1 cut(s)	499
BfrI	CTTAAG	1 cut(s)	109
BisI	GCNGC	2 cut(s)	214, 228
BlsI	GCNGC	2 cut(s)	215, 229
Bme1390I	CCNGG	3 cut(s)	287, 427, 740
BmeRI	GACNNNNNGTC	1 cut(s)	838
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	2 cut(s)	129, 686
BmrFI	CCNGG	3 cut(s)	287, 427, 740
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	5 cut(s)	108, 507, 709, 757, 913
BmuI	ACTGGG	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	3 cut(s)	274, 286, 739
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 76, 406, 665
Bse1I	ACTGG	2 cut(s)	496, 714
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	3 cut(s)	287, 427, 740
BseDI	CCNNGG	3 cut(s)	274, 286, 739
BseGI	GGATG	3 cut(s)	108, 346, 772
BseLI	CCNNNNNNNGG	4 cut(s)	16, 76, 406, 665
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	819, 836
BseNI	ACTGG	2 cut(s)	496, 714
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	2 cut(s)	200, 239
Bsh1285I	CGRYCG	4 cut(s)	14, 135, 165, 195
BshFI	GGCC	1 cut(s)	685
BsiEI	CGRYCG	4 cut(s)	14, 135, 165, 195
BslI	CCNNNNNNNGG	4 cut(s)	16, 76, 406, 665
BsmAI	GTCTC	1 cut(s)	808
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	1 cut(s)	685
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	685
BspCNI	CTCAG	2 cut(s)	818, 835
BspHI	TCATGA	2 cut(s)	85, 900
BspLI	GGNNCC	2 cut(s)	129, 686
BspPI	GGATC	6 cut(s)	61, 87, 122, 135, 152, 293
BspTI	CTTAAG	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	2 cut(s)	496, 714
BssECI	CCNNGG	3 cut(s)	274, 286, 739
BssNAI	GTATAC	1 cut(s)	423
BssNI	GRCGYC	1 cut(s)	545
Bst1107I	GTATAC	1 cut(s)	423
Bst2UI	CCWGG	3 cut(s)	287, 427, 740
Bst4CI	ACNGT	5 cut(s)	15, 136, 166, 680, 868
Bst6I	CTCTTC	2 cut(s)	237, 522
BstACI	GRCGYC	1 cut(s)	545
BstAFI	CTTAAG	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	507, 805, 822
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	3 cut(s)	108, 346, 772
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	498
BstMAI	GTCTC	1 cut(s)	808
BstMCI	CGRYCG	4 cut(s)	14, 135, 165, 195
BstNI	CCWGG	3 cut(s)	287, 427, 740
BstNSI	RCATGY	1 cut(s)	852
BstSCI	CCNGG	3 cut(s)	285, 425, 738
BstSFI	CTRYAG	1 cut(s)	843
BstV1I	GCAGC	2 cut(s)	200, 239
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	3 cut(s)	66, 79, 127
BstYI	RGATCY	3 cut(s)	66, 79, 127
BstZ17I	GTATAC	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	685
BtgI	CCRYGG	1 cut(s)	274
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	3 cut(s)	108, 346, 772
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	3 cut(s)	411, 483, 721
CaiI	CAGNNNCTG	1 cut(s)	866
CciI	TCATGA	2 cut(s)	85, 900
CfoI	GCGC	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	684
CseI	GACGC	2 cut(s)	233, 534
CviAII	CATG	6 cut(s)	86, 514, 541, 837, 849, 901
CviJI	RGCY	6 cut(s)	213, 381, 449, 583, 685, 809
CviKI_1	RGCY	6 cut(s)	213, 381, 449, 583, 685, 809
DdeI	CTNAG	3 cut(s)	507, 805, 822
DriI	GACNNNNNGTC	1 cut(s)	838
Eam1104I	CTCTTC	2 cut(s)	237, 522
Eam1105I	GACNNNNNGTC	1 cut(s)	838
EarI	CTCTTC	2 cut(s)	237, 522
Eco32I	GATATC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	708
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	3 cut(s)	285, 425, 738
EcoRV	GATATC	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	772
FaeI	CATG	6 cut(s)	89, 517, 544, 840, 852, 904
FatI	CATG	6 cut(s)	85, 513, 540, 836, 848, 900
FauI	CCCGC	1 cut(s)	223
FblI	GTMKAC	2 cut(s)	422, 842
Fnu4HI	GCNGC	2 cut(s)	214, 228
FokI	GGATG	3 cut(s)	115, 353, 779
Fsp4HI	GCNGC	2 cut(s)	214, 228
FspBI	CTAG	2 cut(s)	587, 660
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	2 cut(s)	214, 228
HaeII	RGCGCY	1 cut(s)	499
HaeIII	GGCC	1 cut(s)	685
HgaI	GACGC	2 cut(s)	233, 534
HhaI	GCGC	1 cut(s)	498
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	6 cut(s)	89, 517, 544, 840, 852, 904
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	5 cut(s)	6, 374, 430, 651, 833
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	5 cut(s)	189, 409, 423, 655, 843
Hpy188III	TCNNGA	4 cut(s)	86, 605, 854, 901
Hpy8I	GTNNAC	5 cut(s)	189, 409, 423, 655, 843
Hpy99I	CGWCG	1 cut(s)	19
HpyCH4III	ACNGT	5 cut(s)	15, 136, 166, 680, 868
HpyF3I	CTNAG	3 cut(s)	507, 805, 822
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	6 cut(s)	89, 517, 544, 840, 852, 904
HspAI	GCGC	1 cut(s)	496
Lsp1109I	GCAGC	2 cut(s)	200, 239
LweI	GCATC	5 cut(s)	108, 507, 709, 757, 913
MaeI	CTAG	2 cut(s)	587, 660
MaeIII	GTNAC	2 cut(s)	166, 395
MboII	GAAGA	7 cut(s)	74, 76, 233, 254, 357, 481, 539
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	3 cut(s)	66, 79, 127
MlyI	GAGTC	2 cut(s)	660, 827
MmeI	TCCRAC	5 cut(s)	34, 94, 155, 185, 782
MnlI	CCTC	7 cut(s)	93, 118, 232, 238, 330, 523, 633
Mph1103I	ATGCAT	1 cut(s)	772
MroXI	GAANNNNTTC	1 cut(s)	373
MseI	TTAA	2 cut(s)	110, 150
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	2 cut(s)	230, 809
MspCI	CTTAAG	1 cut(s)	109
MspR9I	CCNGG	3 cut(s)	287, 427, 740
MunI	CAATTG	1 cut(s)	792
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	3 cut(s)	287, 427, 740
NlaIII	CATG	6 cut(s)	89, 517, 544, 840, 852, 904
NlaIV	GGNNCC	2 cut(s)	129, 686
NmuCI	GTSAC	2 cut(s)	166, 395
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	1 cut(s)	852
OliI	CACNNNNGTG	1 cut(s)	416
PagI	TCATGA	2 cut(s)	85, 900
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 439
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	6, 374, 430
PkrI	GCNGC	2 cut(s)	215, 229
Ple19I	CGATCG	1 cut(s)	195
PleI	GAGTC	2 cut(s)	659, 827
PpsI	GAGTC	2 cut(s)	659, 827
PsiI	TTATAA	1 cut(s)	48
Psp6I	CCWGG	3 cut(s)	285, 425, 738
PspGI	CCWGG	3 cut(s)	285, 425, 738
PspN4I	GGNNCC	2 cut(s)	129, 686
PspPI	GGNCC	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	3 cut(s)	66, 79, 127
PvuI	CGATCG	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	809
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	110, 150
SatI	GCNGC	2 cut(s)	214, 228
Sau96I	GGNCC	1 cut(s)	684
SchI	GAGTC	2 cut(s)	660, 827
ScrFI	CCNGG	3 cut(s)	287, 427, 740
SetI	ASST	8 cut(s)	383, 402, 451, 490, 585, 644, 811, 952
SfaNI	GCATC	5 cut(s)	108, 507, 709, 757, 913
SfcI	CTRYAG	1 cut(s)	843
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	2 cut(s)	587, 660
StyD4I	CCNGG	3 cut(s)	285, 425, 738
TaaI	ACNGT	5 cut(s)	15, 136, 166, 680, 868
TaqI	TCGA	1 cut(s)	156
TfiI	GAWTC	3 cut(s)	6, 374, 430
Tru1I	TTAA	2 cut(s)	110, 150
Tru9I	TTAA	2 cut(s)	110, 150
TscAI	CASTG	3 cut(s)	418, 483, 721
TseFI	GTSAC	2 cut(s)	166, 395
TseI	GCWGC	2 cut(s)	213, 227
Tsp45I	GTSAC	2 cut(s)	166, 395
TspDTI	ATGAA	4 cut(s)	14, 74, 234, 529
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	3 cut(s)	418, 483, 721
Vha464I	CTTAAG	1 cut(s)	109
XapI	RAATTY	4 cut(s)	355, 472, 692, 779
XceI	RCATGY	1 cut(s)	852
XmiI	GTMKAC	2 cut(s)	422, 842
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	2 cut(s)	587, 660
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.