Rh7DG248800

DNA-directed primase polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001804
Physical Location & Seq
Reverse (-)
25729365 .. 25730303
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG248800.1

Sequence Viewer

Length: 396 bp
ATGTCTGAAGAGGAGATGTTCATGGCGTCTTTGATCTGCAATTTGGAAGTTGATTGTGGGAAGCTTCTAGTCTGCAAATCTGATCTTGATTGTATAAAGACCCTGCATTTTGATACACAGAGGTATATTAGAGTCAACCCTAGTTTTGGAAAATCTTACAGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAATGATGCTTCAGCAACATACTTCCTAGGGAAATCTCCATTTCCAGCTTTGGATGCATTTGTAGAATTTGTTGCTACATTTGGAAATGTCTCAGCATGTCAAGAAACAGATACTGTGAGCGAATTGGCAGACAGCACAAAATCAATCATGAGTGGCAATCCATTCCTTGATGCAAATGCTGTTCCGATCAACCAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Herpes_UL52

Protein Analysis

131

Amino Acids

14.37

Weight (kDa)

4.31

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 173, 260
AcuI CTGAAG 2 cut(s) 27, 189
AcyI GRCGYC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 2 cut(s) 64, 242
AluI AGCT 2 cut(s) 64, 242
Alw26I GTCTC 1 cut(s) 289
AlwNI CAGNNNCTG 1 cut(s) 308
AoxI GGCC 1 cut(s) 164
ApoI RAATTY 2 cut(s) 173, 260
AspA2I CCTAGG 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 165
AvrII CCTAGG 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 3 cut(s) 68, 141, 221
BlnI CCTAGG 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 167
BmsI GCATC 3 cut(s) 190, 238, 355
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 26
BshFI GGCC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 33, 82, 381
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 299
BspHI TCATGA 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 3 cut(s) 33, 82, 381
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 220
Bst4CI ACNGT 2 cut(s) 161, 310
Bst6I CTCTTC 1 cut(s) 3
BstACI GRCGYC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 3 cut(s) 36, 85, 384
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 3 cut(s) 33, 82, 381
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 294
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 308
CciI TCATGA 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 165
CseI GACGC 1 cut(s) 15
CviAII CATG 3 cut(s) 22, 291, 343
CviJI RGCY 3 cut(s) 64, 166, 242
CviKI_1 RGCY 3 cut(s) 64, 166, 242
DdeI CTNAG 1 cut(s) 286
DpnI GATC 3 cut(s) 35, 84, 383
DpnII GATC 3 cut(s) 33, 82, 381
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 27, 189
EcoT14I CCWWGG 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 3 cut(s) 25, 294, 346
FaiI YATR 6 cut(s) 23, 95, 126, 214, 292, 344
FatI CATG 3 cut(s) 21, 290, 342
FokI GGATG 1 cut(s) 260
FspBI CTAG 3 cut(s) 68, 141, 221
HaeIII GGCC 1 cut(s) 166
HgaI GACGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 3 cut(s) 25, 294, 346
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 7, 82, 381
Hpy188III TCNNGA 3 cut(s) 86, 296, 343
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 161, 310
HpyCH4V TGCA 7 cut(s) 39, 75, 106, 179, 192, 251, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 286
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 3 cut(s) 25, 294, 346
Kzo9I GATC 3 cut(s) 33, 82, 381
LpnPI CCDG 2 cut(s) 116, 252
LweI GCATC 3 cut(s) 190, 238, 355
MaeI CTAG 3 cut(s) 68, 141, 221
MalI GATC 3 cut(s) 35, 84, 383
MboI GATC 3 cut(s) 33, 82, 381
MboII GAAGA 1 cut(s) 20
MluCI AATT 4 cut(s) 40, 173, 260, 317
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 2 cut(s) 4, 114
Mph1103I ATGCAT 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 3 cut(s) 33, 82, 381
NlaIII CATG 3 cut(s) 25, 294, 346
NlaIV GGNNCC 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 253
NspI RCATGY 1 cut(s) 294
PagI TCATGA 1 cut(s) 342
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 308
Sau3AI GATC 3 cut(s) 33, 82, 381
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 1 cut(s) 141
SetI ASST 4 cut(s) 66, 125, 244, 394
SfaNI GCATC 3 cut(s) 190, 238, 355
Sse9I AATT 4 cut(s) 40, 173, 260, 317
SspMI CTAG 3 cut(s) 68, 141, 221
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 161, 310
TasI AATT 4 cut(s) 40, 173, 260, 317
TspDTI ATGAA 1 cut(s) 10
XapI RAATTY 2 cut(s) 173, 260
XceI RCATGY 1 cut(s) 294
XmaJI CCTAGG 1 cut(s) 220
XspI CTAG 3 cut(s) 68, 141, 221
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.