RLG00000026431

DNA-directed primase polymerase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
3005383 .. 3009215
3833 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026431

Sequence Viewer

Length: 1434 bp
ATGGACGACGTTGATCGGTTGTTCGAGTGCTTCAAGTGCGGCATCTCACCTCCACCATCAGCTTTGAGAGAGAGAAAGAGAATCAAGAGGCAATCGAATCAGAGGAGTAAAGCCCAGGAAGTCGATTCTCCGCGATCGCCGGAGCAGATAAAGAAAATCGCATCAGATTTACAGCTTTCTGCAGAAAAAGGTGGTTCTACAACAGTTGAAGCAAAAAGCTTTAATCGTAGGAAGCAGTTATCTCCAGTTGTATTTTACGGGTCTCCACATGGTGTGCCTCCAAAGCAACCATCAAGGTTGTTGCTGCGAGTGTTACGTGAGATACGTGTTGATCTCACTGCACAGAAACGATTGAGCTCAAGTCTGTTTAGGAAGGAAGTATGGGCTACATTTCCAAGGCAGGAGGAAGCAATGCAGTTTGCCAAACGGCACAAGAATGTTCACGTTTTTAGTTATCAAGATCACTTTAGTGGACAAAGAAGGTTCCTTGTTTCAAGTTATGATGAGTTTTGGAGAAGGTACAAAATTATGGAGTCCAAGTTTCGTCACCATTACGAAGTCATTCAGGAGGGTTTACCATGCCACCTTTATTTTGACCTGGAGTTCAATAAGAAAGACAATGCAGACAGAAATGGAGATGAAATGGTTGATCTTTTAATATCAGTTGTTTTTGAAGCCTTGCTTGAAAAGTATTCTATTCAGGGGAACATGGAATGGATATTGGAACTTGATTCCTCTACTGAAGCAAAGTTCTCTCGACATCTAATTATTCGCATTCAGAAGACTGCTTTTAAGGACAACTCACATGTAGGTGCATTTGTCACTGAGATATGCTCACGGATATCAAGTGCAAAGGGAAGGGATGGAAGATTTGAGAATTTGTTTATTAGAAAAGATTCAAGCTCTGCAGACTTTAGTCACCTATTTGTGGACACTGCTGTGTATACCAGGAATCGTTGTTTTCGTTTAGCTCTTTCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTACTGGGCGCTTCAAAGCTAAGGACACAATGTCTGAAGAGGAGATGTTCATGGCTTCTTTGATCTGCAATTTGGAAGTTGATTGTGAGAAGCTTCTAGTCTGCAAATCTGATCTTGATTGTATAAAGACCCTGCATTTTGATACAGAGGTCAACCCTAGATTTGGAAAATCTTACAGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAGTGATGCTTCAGCAACATACTTCCTGGGGAAATCTCCATTTCCAGCTTTGGATGCATTTGTAGAATTTGTTGCTACAATTGGAAATGTCTCAGGTAAAATTCGCAGCTGGTATTGGTTCTCAGAGTTTGGACTCATGGTCTACAGCATGTCAAGAAACAGATACTGTGAGCGAATTGGCAGACAGCACAAAAGCAATCATGGTAAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

55.09

Weight (kDa)

9.27

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 944, 1362
AccII CGCG 1 cut(s) 133
AciI CCGC 2 cut(s) 39, 131
AcsI RAATTY 5 cut(s) 877, 994, 1199, 1286, 1320
AcuI CTGAAG 3 cut(s) 762, 1065, 1215
AdeI CACNNNGTG 1 cut(s) 272
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 2 cut(s) 928, 1172
AflIII ACRYGT 2 cut(s) 325, 805
AgsI TTSAA 9 cut(s) 34, 209, 495, 607, 674, 686, 900, 1024, 1210
AhdI GACNNNNNGTC 2 cut(s) 1039, 1358
AjnI CCWGG 4 cut(s) 114, 597, 947, 1245
AleI CACNNNNGTG 2 cut(s) 468, 938
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 2 cut(s) 267, 1315
AlwNI CAGNNNCTG 1 cut(s) 1386
AoxI GGCC 1 cut(s) 1190
ApeKI GCWGC 2 cut(s) 304, 1326
ApoI RAATTY 5 cut(s) 877, 994, 1199, 1286, 1320
AsiSI GCGATCGC 1 cut(s) 137
Asp700I GAANNNNTTC 2 cut(s) 561, 895
AspLEI GCGC 1 cut(s) 1020
AspS9I GGNCC 1 cut(s) 1191
AsuHPI GGTGA 3 cut(s) 39, 539, 911
BaeI ACNNNNGTAYC 2 cut(s) 1143, 1176
BanII GRGCYC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 788
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 291, 1338
BccI CCATC 3 cut(s) 64, 298, 857
BceAI ACGGC 1 cut(s) 443
BciT130I CCWGG 4 cut(s) 116, 599, 949, 1247
BcoDI GTCTC 2 cut(s) 267, 1315
BfaI CTAG 2 cut(s) 1106, 1167
BfmI CTRYAG 3 cut(s) 180, 906, 1363
BfoI RGCGCY 1 cut(s) 1021
BisI GCNGC 3 cut(s) 40, 305, 1327
BlsI GCNGC 3 cut(s) 41, 306, 1328
Bme1390I CCNGG 4 cut(s) 116, 599, 949, 1247
BmeRI GACNNNNNGTC 2 cut(s) 1039, 1358
BmgT120I GGNCC 1 cut(s) 1191
BmiI GGNNCC 2 cut(s) 485, 1193
BmrFI CCNGG 4 cut(s) 116, 599, 949, 1247
BmrI ACTGGG 1 cut(s) 1023
BmsI GCATC 4 cut(s) 51, 170, 1216, 1264
BmuI ACTGGG 1 cut(s) 1023
BoxI GACNNNNGTC 1 cut(s) 915
BpiI GAAGAC 1 cut(s) 788
BplI GAGNNNNNCTC 2 cut(s) 818, 850
BpmI CTGGAG 2 cut(s) 228, 620
Bpu10I CCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 1 cut(s) 343
BsaAI YACGTR 2 cut(s) 317, 326
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 114, 395, 1246
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 2 cut(s) 928, 1172
Bse1I ACTGG 3 cut(s) 245, 1018, 1221
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 4 cut(s) 116, 599, 949, 1247
BseDI CCNNGG 3 cut(s) 114, 395, 1246
BseGI GGATG 2 cut(s) 868, 1279
BseLI CCNNNNNNNGG 2 cut(s) 928, 1172
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 3 cut(s) 816, 1326, 1356
BseNI ACTGG 3 cut(s) 245, 1018, 1221
BseRI GAGGAG 2 cut(s) 118, 1064
BseXI GCAGC 2 cut(s) 291, 1338
BsgI GTGCAG 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 133
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 1192
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 928, 1172
BsmAI GTCTC 2 cut(s) 267, 1315
BsmI GAATGC 1 cut(s) 774
BsnI GGCC 1 cut(s) 1192
Bso31I GGTCTC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 7 cut(s) 13, 134, 331, 460, 649, 1071, 1120
BspACI CCGC 2 cut(s) 39, 131
BspANI GGCC 1 cut(s) 1192
BspCNI CTCAG 3 cut(s) 817, 1325, 1355
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 485, 1193
BspMAI CTGCAG 2 cut(s) 184, 910
BspTNI GGTCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 3 cut(s) 245, 1018, 1221
BssECI CCNNGG 3 cut(s) 114, 395, 1246
BssMI GATC 7 cut(s) 13, 134, 331, 460, 649, 1071, 1120
BssNAI GTATAC 1 cut(s) 945
BssT1I CCWWGG 1 cut(s) 395
Bst1107I GTATAC 1 cut(s) 945
Bst2UI CCWGG 4 cut(s) 116, 599, 949, 1247
Bst4CI ACNGT 3 cut(s) 205, 1187, 1388
Bst6I CTCTTC 1 cut(s) 1041
BstBAI YACGTR 2 cut(s) 317, 326
BstDEI CTNAG 4 cut(s) 825, 1029, 1312, 1342
BstF5I GGATG 2 cut(s) 868, 1279
BstFNI CGCG 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 1021
BstHHI GCGC 1 cut(s) 1020
BstKTI GATC 7 cut(s) 16, 137, 334, 463, 652, 1074, 1123
BstMAI GTCTC 2 cut(s) 267, 1315
BstMBI GATC 7 cut(s) 13, 134, 331, 460, 649, 1071, 1120
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 3 cut(s) 36, 283, 1274
BstNI CCWGG 4 cut(s) 116, 599, 949, 1247
BstNSI RCATGY 2 cut(s) 809, 1372
BstPAI GACNNNNGTC 1 cut(s) 915
BstSCI CCNGG 4 cut(s) 114, 597, 947, 1245
BstSFI CTRYAG 3 cut(s) 180, 906, 1363
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 291, 1338
BstV2I GAAGAC 1 cut(s) 788
BstZ17I GTATAC 1 cut(s) 945
BsuRI GGCC 1 cut(s) 1192
BtsCI GGATG 2 cut(s) 868, 1279
BtsI GCAGTG 2 cut(s) 336, 933
BtsIMutI CAGTG 5 cut(s) 336, 822, 933, 1005, 1228
CaiI CAGNNNCTG 1 cut(s) 1386
CfoI GCGC 1 cut(s) 1020
Cfr13I GGNCC 1 cut(s) 1191
Csp6I GTAC 1 cut(s) 520
CviAII CATG 8 cut(s) 269, 579, 709, 806, 1060, 1357, 1369, 1421
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 4 cut(s) 825, 1029, 1312, 1342
DpnI GATC 7 cut(s) 15, 136, 333, 462, 651, 1073, 1122
DpnII GATC 7 cut(s) 13, 134, 331, 460, 649, 1071, 1120
DraIII CACNNNGTG 1 cut(s) 272
DriI GACNNNNNGTC 2 cut(s) 1039, 1358
Eam1104I CTCTTC 1 cut(s) 1041
Eam1105I GACNNNNNGTC 2 cut(s) 1039, 1358
EarI CTCTTC 1 cut(s) 1041
Ecl136II GAGCTC 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 267
Eco32I GATATC 1 cut(s) 843
Eco53kI GAGCTC 1 cut(s) 357
Eco57I CTGAAG 3 cut(s) 762, 1065, 1215
EcoICRI GAGCTC 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 994
EcoRII CCWGG 4 cut(s) 114, 597, 947, 1245
EcoRV GATATC 1 cut(s) 843
EcoT14I CCWWGG 1 cut(s) 395
EcoT22I ATGCAT 1 cut(s) 1279
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 8 cut(s) 272, 582, 712, 809, 1063, 1360, 1372, 1424
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FatI CATG 8 cut(s) 268, 578, 708, 805, 1059, 1356, 1368, 1420
FblI GTMKAC 2 cut(s) 944, 1362
Fnu4HI GCNGC 3 cut(s) 40, 305, 1327
FokI GGATG 2 cut(s) 875, 1286
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 3 cut(s) 40, 305, 1327
FspBI CTAG 2 cut(s) 1106, 1167
GlaI GCGC 1 cut(s) 1019
GluI GCNGC 3 cut(s) 40, 305, 1327
GsuI CTGGAG 2 cut(s) 228, 620
HaeII RGCGCY 1 cut(s) 1021
HaeIII GGCC 1 cut(s) 1192
HapII CCGG 1 cut(s) 140
HhaI GCGC 1 cut(s) 1020
Hin1II CATG 8 cut(s) 272, 582, 712, 809, 1063, 1360, 1372, 1424
Hin6I GCGC 1 cut(s) 1018
HinP1I GCGC 1 cut(s) 1018
HincII GTYRAC 1 cut(s) 1162
HindII GTYRAC 1 cut(s) 1162
HindIII AAGCTT 2 cut(s) 217, 1100
HinfI GANTC 8 cut(s) 81, 97, 125, 533, 731, 896, 952, 1353
HpaII CCGG 1 cut(s) 140
HphI GGTGA 3 cut(s) 39, 539, 911
Hpy166II GTNNAC 7 cut(s) 442, 473, 575, 931, 945, 1162, 1363
Hpy188I TCNGA 6 cut(s) 102, 166, 780, 1045, 1120, 1345
Hpy188III TCNNGA 6 cut(s) 85, 458, 566, 756, 1124, 1374
Hpy8I GTNNAC 7 cut(s) 442, 473, 575, 931, 945, 1162, 1363
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 367, 474, 510, 852
HpyCH4III ACNGT 3 cut(s) 205, 1187, 1388
HpyCH4IV ACGT 4 cut(s) 9, 316, 325, 444
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 283, 1274
HpyF3I CTNAG 4 cut(s) 825, 1029, 1312, 1342
HpySE526I ACGT 4 cut(s) 9, 316, 325, 444
Hsp92II CATG 8 cut(s) 272, 582, 712, 809, 1063, 1360, 1372, 1424
HspAI GCGC 1 cut(s) 1018
Kzo9I GATC 7 cut(s) 13, 134, 331, 460, 649, 1071, 1120
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 2 cut(s) 291, 1338
LweI GCATC 4 cut(s) 51, 170, 1216, 1264
MaeI CTAG 2 cut(s) 1106, 1167
MaeII ACGT 4 cut(s) 9, 316, 325, 444
MaeIII GTNAC 4 cut(s) 312, 545, 820, 917
MalI GATC 7 cut(s) 15, 136, 333, 462, 651, 1073, 1122
MboI GATC 7 cut(s) 13, 134, 331, 460, 649, 1071, 1120
MboII GAAGA 4 cut(s) 793, 879, 1003, 1058
MfeI CAATTG 1 cut(s) 1299
MhlI GDGCHC 1 cut(s) 359
MlyI GAGTC 2 cut(s) 542, 1347
MnlI CCTC 9 cut(s) 60, 81, 96, 288, 397, 562, 745, 1042, 1150
Mph1103I ATGCAT 1 cut(s) 1279
MroXI GAANNNNTTC 2 cut(s) 561, 895
MseI TTAA 3 cut(s) 222, 656, 792
MslI CAYNNNNRTG 4 cut(s) 435, 468, 810, 938
MspA1I CMGCKG 1 cut(s) 1329
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 4 cut(s) 116, 599, 949, 1247
MunI CAATTG 1 cut(s) 1299
Mva1269I GAATGC 1 cut(s) 774
MvaI CCWGG 4 cut(s) 116, 599, 949, 1247
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 3 cut(s) 36, 283, 1274
NdeII GATC 7 cut(s) 13, 134, 331, 460, 649, 1071, 1120
NlaIII CATG 8 cut(s) 272, 582, 712, 809, 1063, 1360, 1372, 1424
NlaIV GGNNCC 2 cut(s) 485, 1193
NmuCI GTSAC 3 cut(s) 545, 820, 917
NsiI ATGCAT 1 cut(s) 1279
NspI RCATGY 2 cut(s) 809, 1372
OliI CACNNNNGTG 2 cut(s) 468, 938
PciI ACATGT 1 cut(s) 805
PcsI WCGNNNNNNNCGW 2 cut(s) 322, 961
PctI GAATGC 1 cut(s) 774
PdmI GAANNNNTTC 2 cut(s) 561, 895
PfeI GAWTC 6 cut(s) 81, 97, 125, 731, 896, 952
PkrI GCNGC 3 cut(s) 41, 306, 1328
Ple19I CGATCG 1 cut(s) 137
PleI GAGTC 2 cut(s) 541, 1347
PpsI GAGTC 2 cut(s) 541, 1347
Ppu21I YACGTR 2 cut(s) 317, 326
PscI ACATGT 1 cut(s) 805
PshAI GACNNNNGTC 1 cut(s) 915
Psp124BI GAGCTC 1 cut(s) 359
Psp6I CCWGG 4 cut(s) 114, 597, 947, 1245
PspGI CCWGG 4 cut(s) 114, 597, 947, 1245
PspN4I GGNNCC 2 cut(s) 485, 1193
PspPI GGNCC 1 cut(s) 1191
PstI CTGCAG 2 cut(s) 184, 910
PstNI CAGNNNCTG 1 cut(s) 1386
PvuI CGATCG 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 1329
RgaI GCGATCGC 1 cut(s) 137
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
RseI CAYNNNNRTG 4 cut(s) 435, 468, 810, 938
SacI GAGCTC 1 cut(s) 359
SaqAI TTAA 3 cut(s) 222, 656, 792
SatI GCNGC 3 cut(s) 40, 305, 1327
Sau3AI GATC 7 cut(s) 13, 134, 331, 460, 649, 1071, 1120
Sau96I GGNCC 1 cut(s) 1191
SchI GAGTC 2 cut(s) 542, 1347
ScrFI CCNGG 4 cut(s) 116, 599, 949, 1247
SduI GDGCHC 1 cut(s) 359
SfaAI GCGATCGC 1 cut(s) 137
SfaNI GCATC 4 cut(s) 51, 170, 1216, 1264
SfcI CTRYAG 3 cut(s) 180, 906, 1363
SgfI GCGATCGC 1 cut(s) 137
SmiMI CAYNNNNRTG 4 cut(s) 435, 468, 810, 938
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
SsiI CCGC 2 cut(s) 39, 131
SspMI CTAG 2 cut(s) 1106, 1167
SstI GAGCTC 1 cut(s) 359
StyD4I CCNGG 4 cut(s) 114, 597, 947, 1245
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 3 cut(s) 205, 1187, 1388
TaiI ACGT 4 cut(s) 12, 319, 328, 447
TaqI TCGA 4 cut(s) 24, 95, 123, 757
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 6 cut(s) 81, 97, 125, 731, 896, 952
Tru1I TTAA 3 cut(s) 222, 656, 792
Tru9I TTAA 3 cut(s) 222, 656, 792
TscAI CASTG 5 cut(s) 343, 829, 940, 1005, 1228
TseFI GTSAC 3 cut(s) 545, 820, 917
TseI GCWGC 2 cut(s) 304, 1326
Tsp45I GTSAC 3 cut(s) 545, 820, 917
TspDTI ATGAA 3 cut(s) 654, 966, 1048
TspGWI ACGGA 1 cut(s) 853
TspRI CASTG 5 cut(s) 343, 829, 940, 1005, 1228
XapI RAATTY 5 cut(s) 877, 994, 1199, 1286, 1320
XceI RCATGY 2 cut(s) 809, 1372
XmiI GTMKAC 2 cut(s) 944, 1362
XmnI GAANNNNTTC 2 cut(s) 561, 895
XspI CTAG 2 cut(s) 1106, 1167
Zsp2I ATGCAT 1 cut(s) 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.