Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Forward (+)

42136520 .. 42136930

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0347000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCTCTTTGGCCCGAAAGAACAGGTACGAAAACCTATTATTATTCGAGAGCATGTGTTACATTCAAAGGACATAAGGGAATGCAGCAACACGGAGCTAGCCGTTGTCCCCATGAACACCACAGTCACAAAACGAGGTCGTCCCACCTCTCCTTTCTCTTCACCAAAAAAGCTTAAGGGTGTCCCGGAACTGCTAGCCCTACCTGCATGCTCTGAAGCTCCTACTAAAAAGGTGAAGCACCCAGAGTTCACATCCAAGTTTACTAGCAAATCCCTCTCCTTGGTGGAGGTGCCAAGCTGTGTACTTGTCCCAAAGGAGGGGAATGGAGCTGAGACAAAGAAGAAGAAGCGGGGAAGGCCCCTAGGATCAAGGAACAAGCAACCCTCCATGAAGAAGATTGAGAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

136

Amino Acids

15.04

Weight (kDa)

10.21

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	289
AciI	CCGC	1 cut(s)	349
AclWI	GGATC	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	27, 303
AfiI	CCNNNNNNNGG	3 cut(s)	280, 316, 317
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	66
AluBI	AGCT	5 cut(s)	97, 172, 218, 297, 329
AluI	AGCT	5 cut(s)	97, 172, 218, 297, 329
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	2 cut(s)	10, 356
ApeKI	GCWGC	1 cut(s)	84
AspA2I	CCTAGG	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	11, 357
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	153, 244
AsuNHI	GCTAGC	2 cut(s)	97, 193
AvrII	CCTAGG	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	4 cut(s)	98, 194, 264, 362
BfrI	CTTAAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	1 cut(s)	85
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	11, 357
BmiI	GGNNCC	2 cut(s)	291, 359
BmrFI	CCNGG	1 cut(s)	185
BmtI	GCTAGC	2 cut(s)	101, 197
BpuMI	CCSGG	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	279, 361
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 316, 317
BseDI	CCNNGG	2 cut(s)	279, 361
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	3 cut(s)	280, 316, 317
BseMII	CTCAG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	96
BshFI	GGCC	2 cut(s)	12, 358
BshNI	GGYRCC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	4 cut(s)	92, 126, 167, 293
BslI	CCNNNNNNNGG	3 cut(s)	280, 316, 317
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	4 cut(s)	92, 126, 167, 293
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	12, 358
Bsp143I	GATC	1 cut(s)	365
BspACI	CCGC	1 cut(s)	349
BspANI	GGCC	2 cut(s)	12, 358
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	291, 359
BspMI	ACCTGC	1 cut(s)	211
BspOI	GCTAGC	2 cut(s)	101, 197
BspPI	GGATC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	279, 361
BssMI	GATC	1 cut(s)	365
BssT1I	CCWWGG	2 cut(s)	279, 361
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	163
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	99, 195, 208
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	1 cut(s)	368
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 355
BstNSI	RCATGY	2 cut(s)	56, 210
BstSCI	CCNGG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	12, 358
BtsCI	GGATG	1 cut(s)	251
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	99, 195, 208
Cfr13I	GGNCC	2 cut(s)	11, 357
Csp6I	GTAC	2 cut(s)	26, 302
CviAII	CATG	4 cut(s)	53, 112, 207, 388
CviJI	RGCY	9 cut(s)	12, 97, 101, 172, 197, 218, 297, 329, 358
CviKI_1	RGCY	9 cut(s)	12, 97, 101, 172, 197, 218, 297, 329, 358
CviQI	GTAC	2 cut(s)	26, 302
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	1 cut(s)	367
DpnII	GATC	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco130I	CCWWGG	2 cut(s)	279, 361
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	357
EcoT14I	CCWWGG	2 cut(s)	279, 361
ErhI	CCWWGG	2 cut(s)	279, 361
FaeI	CATG	4 cut(s)	56, 115, 210, 391
FaiI	YATR	6 cut(s)	54, 74, 113, 208, 389, 409
FaqI	GGGAC	4 cut(s)	92, 126, 167, 293
FatI	CATG	4 cut(s)	52, 111, 206, 387
FauI	CCCGC	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	4 cut(s)	98, 194, 264, 362
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	12, 358
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	4 cut(s)	56, 115, 210, 391
HindIII	AAGCTT	1 cut(s)	170
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	153, 244
Hpy166II	GTNNAC	3 cut(s)	249, 261, 302
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	3 cut(s)	249, 261, 302
HpyAV	CCTTC	1 cut(s)	348
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	84, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 355
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	4 cut(s)	56, 115, 210, 391
Kzo9I	GATC	1 cut(s)	365
LmnI	GCTCC	3 cut(s)	94, 223, 326
LpnPI	CCDG	4 cut(s)	8, 198, 216, 255
Lsp1109I	GCAGC	1 cut(s)	96
MaeI	CTAG	4 cut(s)	98, 194, 264, 362
MaeIII	GTNAC	2 cut(s)	57, 124
MalI	GATC	1 cut(s)	367
MboI	GATC	1 cut(s)	365
MboII	GAAGA	5 cut(s)	150, 352, 355, 403, 406
MnlI	CCTC	6 cut(s)	128, 157, 280, 284, 310, 394
MseI	TTAA	1 cut(s)	174
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	203, 355
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	365
NheI	GCTAGC	2 cut(s)	97, 193
NlaIII	CATG	4 cut(s)	56, 115, 210, 391
NlaIV	GGNNCC	2 cut(s)	291, 359
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	2 cut(s)	56, 210
PaeI	GCATGC	1 cut(s)	210
PctI	GAATGC	1 cut(s)	86
PfoI	TCCNGGA	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	291, 359
PspPI	GGNCC	2 cut(s)	11, 357
RsaI	GTAC	2 cut(s)	27, 303
RsaNI	GTAC	2 cut(s)	26, 302
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	365
Sau96I	GGNCC	2 cut(s)	11, 357
ScrFI	CCNGG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	210
SsiI	CCGC	1 cut(s)	349
SspMI	CTAG	4 cut(s)	98, 194, 264, 362
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	2 cut(s)	279, 361
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	46
TatI	WGTACW	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	128, 404
TspGWI	ACGGA	1 cut(s)	107
Vha464I	CTTAAG	1 cut(s)	173
XceI	RCATGY	2 cut(s)	56, 210
XmaJI	CCTAGG	1 cut(s)	361
XspI	CTAG	4 cut(s)	98, 194, 264, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.