Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008712.1

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Reverse (-)

44853 .. 48637

Gene Structure 3785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008712.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

atggacgacgttgatcggttgttcgagtgcttcaagtgcggcatctcaccaccaccatctgctttgagagagagaaagagaatcaagaggcaatcgattcagaggagtaaagcccaggaagtcgattctccgcggtcgccggagcagataaagaaaatcgcatcagatttacagctttctgcagaaaaacttgttcagggtggttctacaacagtcgaagcaaaaagctttaatcggaggaagcagttatctccggttgtattttatgggtctccacatggtgtacctccaaagcaaccatcaaggttgttgctgcgagtgttacgtgagatacgtgttgatctcactgcacagaaacgattgagctcaagtctgtttaggaaggaagtatgggctacatttccaaggcaggaggaagcaatgcagtttgccaaacggcacgagaatgttcacgtttttagttatcaagatcactttagtggacaaagaaggttccttgtttcaagttataatgagttttggagaaggtacaagattatggagtccaagtttcgtcaccattacgaatgcttctttaactatgatatatcttatgatcaaagttatggtttccaacagcagtctgaagaggagatgttcatggtgtctttgatctgcaatttggaagttgattgtgagaagcttctagtctgcaaatctgatcttgattgtataaagaccctgcattttgatacagaggtcaaccctagttttggaaaatcttacagttggccccaagaatttgcattgaatggttgcaccagtgatgcttcagcaacatacttcctggggaaatctccatttccagctttggatgcatttgtagaatttgttgctacaattggaaatgtctcaggtaaaattcgcagctggtattggttctcagagtttggactcatggtctacagcatgtcaagaaacagatactgtgagcgaattggcagacagcacaaaagcaatcatgtgatatacattgctgacctcagaaagggtgtttattatcagaaatgtcatgatcccgactgcagaggtgaggaaaagttaatatcgtgctaccgttctccatcacgtccgattccatggaatattgtccctgacatggtgtatgaatgtcaaaaagatcatgaacgtgttttttttgatgatgagaacacggcaagcagcggcgttacagattcatggtggcttgaagctataagagttgcagatgaagttgaaaataagcagaattcattagagctcagcaatctggtgggactaaatcttccgtgtcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

438

Amino Acids

51.12

Weight (kDa)

8.11

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	942
AccII	CGCG	1 cut(s)	133
AciI	CCGC	4 cut(s)	39, 131, 133, 1203
AclWI	GGATC	1 cut(s)	1049
AcsI	RAATTY	4 cut(s)	779, 866, 900, 1267
AcuI	CTGAAG	2 cut(s)	645, 795
AdeI	CACNNNGTG	1 cut(s)	281
AfaI	GTAC	2 cut(s)	285, 530
AfiI	CCNNNNNNNGG	3 cut(s)	752, 1027, 1138
AflIII	ACRYGT	2 cut(s)	334, 1168
AgsI	TTSAA	5 cut(s)	34, 504, 790, 1229, 1256
AhdI	GACNNNNNGTC	1 cut(s)	938
AjiI	CACGTC	1 cut(s)	1109
AjnI	CCWGG	2 cut(s)	114, 825
AleI	CACNNNNGTG	1 cut(s)	477
AluBI	AGCT	8 cut(s)	175, 228, 366, 682, 848, 909, 1232, 1279
AluI	AGCT	8 cut(s)	175, 228, 366, 682, 848, 909, 1232, 1279
Alw21I	GWGCWC	2 cut(s)	368, 1281
Alw26I	GTCTC	2 cut(s)	276, 895
AlwI	GGATC	1 cut(s)	1049
AlwNI	CAGNNNCTG	1 cut(s)	966
AoxI	GGCC	1 cut(s)	770
ApeKI	GCWGC	3 cut(s)	313, 906, 1200
ApoI	RAATTY	4 cut(s)	779, 866, 900, 1267
AspS9I	GGNCC	1 cut(s)	771
AsuHPI	GGTGA	3 cut(s)	39, 548, 1082
BaeI	ACNNNNGTAYC	2 cut(s)	723, 756
BanII	GRGCYC	2 cut(s)	368, 1281
BauI	CACGAG	1 cut(s)	440
Bbv12I	GWGCWC	2 cut(s)	368, 1281
BbvI	GCAGC	3 cut(s)	300, 918, 1212
BccI	CCATC	3 cut(s)	64, 307, 1111
BceAI	ACGGC	2 cut(s)	452, 1209
BciT130I	CCWGG	2 cut(s)	116, 827
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	2 cut(s)	276, 895
BfaI	CTAG	2 cut(s)	686, 747
BfmI	CTRYAG	3 cut(s)	180, 943, 1063
BisI	GCNGC	5 cut(s)	40, 314, 907, 1201, 1204
BlpI	GCTNAGC	1 cut(s)	1280
BlsI	GCNGC	5 cut(s)	41, 315, 908, 1202, 1205
Bme1390I	CCNGG	2 cut(s)	116, 827
BmeRI	GACNNNNNGTC	1 cut(s)	938
BmgBI	CACGTC	1 cut(s)	1109
BmgT120I	GGNCC	1 cut(s)	771
BmiI	GGNNCC	2 cut(s)	494, 773
BmrFI	CCNGG	2 cut(s)	116, 827
BmsI	GCATC	4 cut(s)	51, 170, 796, 844
Bpu1102I	GCTNAGC	1 cut(s)	1280
BpuEI	CTTGAG	1 cut(s)	352
Bsa29I	ATCGAT	1 cut(s)	95
BsaAI	YACGTR	2 cut(s)	326, 335
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	5 cut(s)	114, 131, 404, 826, 1118
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	3 cut(s)	752, 1027, 1138
Bse1I	ACTGG	1 cut(s)	801
Bse3DI	GCAATG	2 cut(s)	426, 1011
BseBI	CCWGG	2 cut(s)	116, 827
BseCI	ATCGAT	1 cut(s)	95
BseDI	CCNNGG	5 cut(s)	114, 131, 404, 826, 1118
BseGI	GGATG	1 cut(s)	859
BseLI	CCNNNNNNNGG	3 cut(s)	752, 1027, 1138
BseMI	GCAATG	2 cut(s)	426, 1011
BseMII	CTCAG	4 cut(s)	906, 936, 1036, 1294
BseNI	ACTGG	1 cut(s)	801
BseRI	GAGGAG	2 cut(s)	118, 644
BseXI	GCAGC	3 cut(s)	300, 918, 1212
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	772
BshVI	ATCGAT	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	137
BsiHKAI	GWGCWC	2 cut(s)	368, 1281
BsiSI	CCGG	2 cut(s)	140, 254
BslFI	GGGAC	2 cut(s)	1115, 1308
BslI	CCNNNNNNNGG	3 cut(s)	752, 1027, 1138
BsmAI	GTCTC	2 cut(s)	276, 895
BsmFI	GGGAC	2 cut(s)	1115, 1308
BsmI	GAATGC	1 cut(s)	572
BsnI	GGCC	1 cut(s)	772
Bso31I	GGTCTC	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	368, 1281
Bsp143I	GATC	8 cut(s)	13, 340, 469, 595, 651, 700, 1054, 1159
Bsp1720I	GCTNAGC	1 cut(s)	1280
Bsp19I	CCATGG	1 cut(s)	1118
BspACI	CCGC	4 cut(s)	39, 131, 133, 1203
BspANI	GGCC	1 cut(s)	772
BspCNI	CTCAG	4 cut(s)	905, 935, 1035, 1293
BspDI	ATCGAT	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	133
BspHI	TCATGA	2 cut(s)	1051, 1162
BspLI	GGNNCC	2 cut(s)	494, 773
BspMAI	CTGCAG	2 cut(s)	184, 1067
BspPI	GGATC	1 cut(s)	1049
BspTNI	GGTCTC	1 cut(s)	276
BsrDI	GCAATG	2 cut(s)	426, 1011
BsrI	ACTGG	1 cut(s)	801
BssECI	CCNNGG	5 cut(s)	114, 131, 404, 826, 1118
BssMI	GATC	8 cut(s)	13, 340, 469, 595, 651, 700, 1054, 1159
BssSI	CACGAG	1 cut(s)	440
BssT1I	CCWWGG	2 cut(s)	404, 1118
Bst2BI	CACGAG	1 cut(s)	440
Bst2UI	CCWGG	2 cut(s)	116, 827
Bst4CI	ACNGT	4 cut(s)	214, 767, 968, 1097
Bst6I	CTCTTC	1 cut(s)	621
BstBAI	YACGTR	2 cut(s)	326, 335
BstC8I	GCNNGC	1 cut(s)	1198
BstDEI	CTNAG	4 cut(s)	892, 922, 1022, 1280
BstDSI	CCRYGG	2 cut(s)	131, 1118
BstENI	CCTNNNNNAGG	1 cut(s)	1025
BstF5I	GGATG	1 cut(s)	859
BstFNI	CGCG	1 cut(s)	133
BstKTI	GATC	8 cut(s)	16, 343, 472, 598, 654, 703, 1057, 1162
BstMAI	GTCTC	2 cut(s)	276, 895
BstMBI	GATC	8 cut(s)	13, 340, 469, 595, 651, 700, 1054, 1159
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 854
BstNI	CCWGG	2 cut(s)	116, 827
BstNSI	RCATGY	1 cut(s)	952
BstSCI	CCNGG	2 cut(s)	114, 825
BstSFI	CTRYAG	3 cut(s)	180, 943, 1063
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	3 cut(s)	300, 918, 1212
Bsu15I	ATCGAT	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	772
BsuTUI	ATCGAT	1 cut(s)	95
BtgI	CCRYGG	2 cut(s)	131, 1118
BtrI	CACGTC	1 cut(s)	1109
BtsCI	GGATG	1 cut(s)	859
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	345, 808
Cac8I	GCNNGC	1 cut(s)	1198
CaiI	CAGNNNCTG	1 cut(s)	966
CciI	TCATGA	2 cut(s)	1051, 1162
Cfr13I	GGNCC	1 cut(s)	771
Cfr42I	CCGCGG	1 cut(s)	134
ClaI	ATCGAT	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	284, 529
CviQI	GTAC	2 cut(s)	284, 529
DdeI	CTNAG	4 cut(s)	892, 922, 1022, 1280
DpnI	GATC	8 cut(s)	15, 342, 471, 597, 653, 702, 1056, 1161
DpnII	GATC	8 cut(s)	13, 340, 469, 595, 651, 700, 1054, 1159
DraIII	CACNNNGTG	1 cut(s)	281
DriI	GACNNNNNGTC	1 cut(s)	938
Eam1104I	CTCTTC	1 cut(s)	621
Eam1105I	GACNNNNNGTC	1 cut(s)	938
EarI	CTCTTC	1 cut(s)	621
Ecl136II	GAGCTC	2 cut(s)	366, 1279
Eco130I	CCWWGG	2 cut(s)	404, 1118
Eco24I	GRGCYC	2 cut(s)	368, 1281
Eco31I	GGTCTC	1 cut(s)	276
Eco53kI	GAGCTC	2 cut(s)	366, 1279
Eco57I	CTGAAG	2 cut(s)	645, 795
EcoICRI	GAGCTC	2 cut(s)	366, 1279
EcoNI	CCTNNNNNAGG	1 cut(s)	1025
EcoRI	GAATTC	1 cut(s)	1267
EcoRII	CCWGG	2 cut(s)	114, 825
EcoT14I	CCWWGG	2 cut(s)	404, 1118
EcoT22I	ATGCAT	1 cut(s)	859
EcoT38I	GRGCYC	2 cut(s)	368, 1281
ErhI	CCWWGG	2 cut(s)	404, 1118
FaqI	GGGAC	2 cut(s)	1115, 1308
FbaI	TGATCA	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	942
Fnu4HI	GCNGC	5 cut(s)	40, 314, 907, 1201, 1204
FokI	GGATG	1 cut(s)	866
FriOI	GRGCYC	2 cut(s)	368, 1281
Fsp4HI	GCNGC	5 cut(s)	40, 314, 907, 1201, 1204
FspBI	CTAG	2 cut(s)	686, 747
GluI	GCNGC	5 cut(s)	40, 314, 907, 1201, 1204
HaeIII	GGCC	1 cut(s)	772
HapII	CCGG	2 cut(s)	140, 254
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	2 cut(s)	226, 680
HinfI	GANTC	7 cut(s)	81, 97, 125, 542, 933, 1114, 1214
HpaII	CCGG	2 cut(s)	140, 254
HphI	GGTGA	3 cut(s)	39, 548, 1082
Hpy166II	GTNNAC	5 cut(s)	284, 451, 482, 742, 943
Hpy188I	TCNGA	9 cut(s)	102, 166, 237, 625, 700, 925, 1025, 1044, 1113
Hpy188III	TCNNGA	7 cut(s)	85, 467, 704, 954, 1052, 1058, 1163
Hpy8I	GTNNAC	5 cut(s)	284, 451, 482, 742, 943
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	376, 483, 519
HpyCH4III	ACNGT	4 cut(s)	214, 767, 968, 1097
HpyCH4IV	ACGT	6 cut(s)	9, 325, 334, 453, 1108, 1168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 854
HpyF3I	CTNAG	4 cut(s)	892, 922, 1022, 1280
HpySE526I	ACGT	6 cut(s)	9, 325, 334, 453, 1108, 1168
Ksp22I	TGATCA	1 cut(s)	595
KspI	CCGCGG	1 cut(s)	134
Kzo9I	GATC	8 cut(s)	13, 340, 469, 595, 651, 700, 1054, 1159
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	3 cut(s)	300, 918, 1212
LweI	GCATC	4 cut(s)	51, 170, 796, 844
MaeI	CTAG	2 cut(s)	686, 747
MaeII	ACGT	6 cut(s)	9, 325, 334, 453, 1108, 1168
MaeIII	GTNAC	3 cut(s)	321, 554, 1207
MalI	GATC	8 cut(s)	15, 342, 471, 597, 653, 702, 1056, 1161
MboI	GATC	8 cut(s)	13, 340, 469, 595, 651, 700, 1054, 1159
MboII	GAAGA	2 cut(s)	638, 1295
MfeI	CAATTG	1 cut(s)	879
MhlI	GDGCHC	2 cut(s)	368, 1281
MluCI	AATT	7 cut(s)	658, 779, 866, 879, 900, 975, 1267
MlyI	GAGTC	2 cut(s)	551, 927
MmeI	TCCRAC	1 cut(s)	637
Mph1103I	ATGCAT	1 cut(s)	859
MseI	TTAA	4 cut(s)	231, 576, 1082, 1315
MslI	CAYNNNNRTG	3 cut(s)	444, 477, 1167
MspA1I	CMGCKG	3 cut(s)	133, 909, 1203
MspI	CCGG	2 cut(s)	140, 254
MspR9I	CCNGG	2 cut(s)	116, 827
MunI	CAATTG	1 cut(s)	879
Mva1269I	GAATGC	1 cut(s)	572
MvaI	CCWGG	2 cut(s)	116, 827
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	36, 854
NcoI	CCATGG	1 cut(s)	1118
NdeII	GATC	8 cut(s)	13, 340, 469, 595, 651, 700, 1054, 1159
NlaIV	GGNNCC	2 cut(s)	494, 773
NmuCI	GTSAC	1 cut(s)	554
NsiI	ATGCAT	1 cut(s)	859
NspI	RCATGY	1 cut(s)	952
OliI	CACNNNNGTG	1 cut(s)	477
PagI	TCATGA	2 cut(s)	1051, 1162
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PctI	GAATGC	1 cut(s)	572
PfeI	GAWTC	5 cut(s)	81, 97, 125, 1114, 1214
PkrI	GCNGC	5 cut(s)	41, 315, 908, 1202, 1205
PleI	GAGTC	2 cut(s)	550, 927
PpsI	GAGTC	2 cut(s)	550, 927
Ppu21I	YACGTR	2 cut(s)	326, 335
PsiI	TTATAA	1 cut(s)	510
Psp124BI	GAGCTC	2 cut(s)	368, 1281
Psp6I	CCWGG	2 cut(s)	114, 825
PspGI	CCWGG	2 cut(s)	114, 825
PspN4I	GGNNCC	2 cut(s)	494, 773
PspPI	GGNCC	1 cut(s)	771
PstI	CTGCAG	2 cut(s)	184, 1067
PstNI	CAGNNNCTG	1 cut(s)	966
PvuII	CAGCTG	1 cut(s)	909
RsaI	GTAC	2 cut(s)	285, 530
RsaNI	GTAC	2 cut(s)	284, 529
RseI	CAYNNNNRTG	3 cut(s)	444, 477, 1167
SacI	GAGCTC	2 cut(s)	368, 1281
SacII	CCGCGG	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	231, 576, 1082, 1315
SatI	GCNGC	5 cut(s)	40, 314, 907, 1201, 1204
Sau3AI	GATC	8 cut(s)	13, 340, 469, 595, 651, 700, 1054, 1159
Sau96I	GGNCC	1 cut(s)	771
SchI	GAGTC	2 cut(s)	551, 927
ScrFI	CCNGG	2 cut(s)	116, 827
SduI	GDGCHC	2 cut(s)	368, 1281
SfaNI	GCATC	4 cut(s)	51, 170, 796, 844
SfcI	CTRYAG	3 cut(s)	180, 943, 1063
Sfr303I	CCGCGG	1 cut(s)	134
SgrBI	CCGCGG	1 cut(s)	134
SmiMI	CAYNNNNRTG	3 cut(s)	444, 477, 1167
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	7 cut(s)	658, 779, 866, 879, 900, 975, 1267
SsiI	CCGC	4 cut(s)	39, 131, 133, 1203
SspI	AATATT	1 cut(s)	1126
SspMI	CTAG	2 cut(s)	686, 747
SstI	GAGCTC	2 cut(s)	368, 1281
StyD4I	CCNGG	2 cut(s)	114, 825
StyI	CCWWGG	2 cut(s)	404, 1118
TaaI	ACNGT	4 cut(s)	214, 767, 968, 1097
TaiI	ACGT	6 cut(s)	12, 328, 337, 456, 1111, 1171
TaqI	TCGA	4 cut(s)	24, 95, 123, 216
TasI	AATT	7 cut(s)	658, 779, 866, 879, 900, 975, 1267
TauI	GCSGC	2 cut(s)	42, 1206
TfiI	GAWTC	5 cut(s)	81, 97, 125, 1114, 1214
Tru1I	TTAA	4 cut(s)	231, 576, 1082, 1315
Tru9I	TTAA	4 cut(s)	231, 576, 1082, 1315
TscAI	CASTG	2 cut(s)	352, 808
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	3 cut(s)	313, 906, 1200
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	6 cut(s)	628, 1161, 1179, 1206, 1260, 1263
TspGWI	ACGGA	1 cut(s)	1296
TspRI	CASTG	2 cut(s)	352, 808
XagI	CCTNNNNNAGG	1 cut(s)	1025
XapI	RAATTY	4 cut(s)	779, 866, 900, 1267
XceI	RCATGY	1 cut(s)	952
XmiI	GTMKAC	1 cut(s)	942
XspI	CTAG	2 cut(s)	686, 747
Zsp2I	ATGCAT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.