Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Reverse (-)

14516133 .. 14522668

Gene Structure 6536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G014430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCATGTTGCCACTTGCGCATTCTGTGAAGGAGTTGGAGACAGAGATCGAAGTGGTAAAAGAACCAGTCGACCAAAATACCTTCAAACCATGAAAACAACTTGTTCGCAGGGTTCAGATGATGAGAGTGGTCATGCCACCGGGAGTCAGAATGAGAACCCCAGTGTCAATCCCAAATCTTCAGGAAACTCGAAAAATGCAAAGTTCTCTCGACATTTAATTATTCGCATTCAGAAGACTGCTTTTAAGGACAACTCACATGTAGGTGCATTTGTCACCGAGATATGCTCACGGATATCAAGTGCAAAAGGGAGGGATGGAAGATTTGAGAATTTGTTTATTAGAAAAGATTCAAGCTCTGCATACTTTAGTCACCTATTTGTGGACACTGCTGTGTATACCAGGAATCGTTGTTTTCATTTAGCTCTATCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTACTGGGCGTTTCAAAACTAAGGACATGATGTCTGAAGAGGAGATGTTCATGGCGTCTTTGATCTGTAATTTGGAAGTTGATTATGGGAAGCTTCTAGTCTGCAAATCTGATCTTGATTGTATAAAGACCCTGCATTTTGATACACAGAGGTATATTAGAGTCAACCCTAGTTTTGGAAAATCTTACAGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAATGATGCATCAGCAACATACTTCCTGGGGAAATCTCCATTTCCAGCTTTGGATGCATTTGTAGAATTTGTTGCTACAATTGGAAATGTCTCAGGTAAAATTCGCAGCTGGTATTGGTTCTCAGAGTTTGGACTCATGGTCTACAGCATGTCAAGAAACAGATACTGTGAGCGAATTGGCAGACAGCACAAAAGCAATCATGGTAAAGCCTATACATTGTATCTTATGCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

307

Amino Acids

34.6

Weight (kDa)

9.34

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	19
AccI	GTMKAC	3 cut(s)	70, 398, 828
AcsI	RAATTY	5 cut(s)	331, 448, 665, 752, 786
AcuI	CTGAAG	2 cut(s)	165, 519
AcyI	GRCGYC	1 cut(s)	518
AfiI	CCNNNNNNNGG	2 cut(s)	382, 638
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	86, 354, 478, 676
AhdI	GACNNNNNGTC	2 cut(s)	493, 824
AjnI	CCWGG	2 cut(s)	401, 711
AleI	CACNNNNGTG	1 cut(s)	392
AluBI	AGCT	5 cut(s)	357, 425, 556, 734, 795
AluI	AGCT	5 cut(s)	357, 425, 556, 734, 795
Alw26I	GTCTC	2 cut(s)	33, 781
AlwNI	CAGNNNCTG	1 cut(s)	852
AoxI	GGCC	1 cut(s)	656
ApeKI	GCWGC	1 cut(s)	792
ApoI	RAATTY	5 cut(s)	331, 448, 665, 752, 786
Asp700I	GAANNNNTTC	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	657
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	268, 365
BbsI	GAAGAC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	804
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	2 cut(s)	403, 713
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	33, 781
BfaI	CTAG	2 cut(s)	560, 633
BfmI	CTRYAG	1 cut(s)	829
BisI	GCNGC	1 cut(s)	793
BlsI	GCNGC	1 cut(s)	794
Bme1390I	CCNGG	3 cut(s)	142, 403, 713
BmeRI	GACNNNNNGTC	2 cut(s)	493, 824
BmgT120I	GGNCC	1 cut(s)	657
BmiI	GGNNCC	1 cut(s)	659
BmrFI	CCNGG	3 cut(s)	142, 403, 713
BmrI	ACTGGG	2 cut(s)	156, 477
BmsI	GCATC	3 cut(s)	682, 704, 730
BmuI	ACTGGG	2 cut(s)	156, 477
BpiI	GAAGAC	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpuMI	CCSGG	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 638
Bse1I	ACTGG	3 cut(s)	66, 162, 472
BseBI	CCWGG	2 cut(s)	403, 713
BseDI	CCNNGG	1 cut(s)	712
BseGI	GGATG	2 cut(s)	322, 745
BseLI	CCNNNNNNNGG	2 cut(s)	382, 638
BseMII	CTCAG	2 cut(s)	792, 822
BseNI	ACTGG	3 cut(s)	66, 162, 472
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	804
BshFI	GGCC	1 cut(s)	658
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	382, 638
BsmAI	GTCTC	2 cut(s)	33, 781
BsmI	GAATGC	2 cut(s)	20, 228
BsnI	GGCC	1 cut(s)	658
Bsp143I	GATC	3 cut(s)	46, 525, 574
BspANI	GGCC	1 cut(s)	658
BspCNI	CTCAG	2 cut(s)	791, 821
BspHI	TCATGA	1 cut(s)	920
BspLI	GGNNCC	1 cut(s)	659
BsrI	ACTGG	3 cut(s)	66, 162, 472
BssECI	CCNNGG	1 cut(s)	712
BssMI	GATC	3 cut(s)	46, 525, 574
BssNAI	GTATAC	1 cut(s)	399
BssNI	GRCGYC	1 cut(s)	518
Bst1107I	GTATAC	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	403, 713
Bst4CI	ACNGT	2 cut(s)	653, 854
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	1 cut(s)	518
BstDEI	CTNAG	3 cut(s)	483, 778, 808
BstF5I	GGATG	2 cut(s)	322, 745
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	3 cut(s)	49, 528, 577
BstMAI	GTCTC	2 cut(s)	33, 781
BstMBI	GATC	3 cut(s)	46, 525, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 740
BstNI	CCWGG	2 cut(s)	403, 713
BstNSI	RCATGY	3 cut(s)	8, 263, 838
BstSCI	CCNGG	3 cut(s)	140, 401, 711
BstSFI	CTRYAG	1 cut(s)	829
BstV1I	GCAGC	1 cut(s)	804
BstV2I	GAAGAC	1 cut(s)	242
BstZ17I	GTATAC	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	658
BtsCI	GGATG	2 cut(s)	322, 745
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	3 cut(s)	169, 387, 459
CaiI	CAGNNNCTG	1 cut(s)	852
CciI	TCATGA	1 cut(s)	920
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	657
CseI	GACGC	1 cut(s)	507
CviJI	RGCY	7 cut(s)	357, 425, 556, 658, 734, 795, 896
CviKI_1	RGCY	7 cut(s)	357, 425, 556, 658, 734, 795, 896
DdeI	CTNAG	3 cut(s)	483, 778, 808
DpnI	GATC	3 cut(s)	48, 527, 576
DpnII	GATC	3 cut(s)	46, 525, 574
DriI	GACNNNNNGTC	2 cut(s)	493, 824
Eam1104I	CTCTTC	1 cut(s)	495
Eam1105I	GACNNNNNGTC	2 cut(s)	493, 824
EarI	CTCTTC	1 cut(s)	495
Eco32I	GATATC	1 cut(s)	297
Eco57I	CTGAAG	2 cut(s)	165, 519
EcoRI	GAATTC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	401, 711
EcoRV	GATATC	1 cut(s)	297
EcoT22I	ATGCAT	3 cut(s)	6, 697, 745
FblI	GTMKAC	3 cut(s)	70, 398, 828
Fnu4HI	GCNGC	1 cut(s)	793
FokI	GGATG	2 cut(s)	329, 752
Fsp4HI	GCNGC	1 cut(s)	793
FspBI	CTAG	2 cut(s)	560, 633
FspI	TGCGCA	1 cut(s)	19
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	793
HaeIII	GGCC	1 cut(s)	658
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	507
HhaI	GCGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	518
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	2 cut(s)	71, 628
HindII	GTYRAC	2 cut(s)	71, 628
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	5 cut(s)	145, 350, 406, 624, 819
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	2 cut(s)	268, 365
Hpy166II	GTNNAC	5 cut(s)	71, 385, 399, 628, 829
Hpy188I	TCNGA	6 cut(s)	118, 150, 234, 499, 574, 811
Hpy188III	TCNNGA	5 cut(s)	183, 210, 578, 840, 921
Hpy8I	GTNNAC	5 cut(s)	71, 385, 399, 628, 829
HpyAV	CCTTC	2 cut(s)	23, 92
HpyCH4III	ACNGT	2 cut(s)	653, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 740
HpyF3I	CTNAG	3 cut(s)	483, 778, 808
Hsp92I	GRCGYC	1 cut(s)	518
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	46, 525, 574
Lsp1109I	GCAGC	1 cut(s)	804
LweI	GCATC	3 cut(s)	682, 704, 730
MaeI	CTAG	2 cut(s)	560, 633
MaeIII	GTNAC	2 cut(s)	274, 371
MalI	GATC	3 cut(s)	48, 527, 576
MboI	GATC	3 cut(s)	46, 525, 574
MboII	GAAGA	5 cut(s)	171, 247, 333, 457, 512
MfeI	CAATTG	1 cut(s)	765
MluCI	AATT	9 cut(s)	219, 331, 448, 532, 665, 752, 765, 786, 861
MlyI	GAGTC	3 cut(s)	154, 633, 813
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	306, 496, 606
Mph1103I	ATGCAT	3 cut(s)	6, 697, 745
MroXI	GAANNNNTTC	1 cut(s)	349
MseI	TTAA	2 cut(s)	218, 246
MslI	CAYNNNNRTG	2 cut(s)	264, 392
MspA1I	CMGCKG	1 cut(s)	795
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	3 cut(s)	142, 403, 713
MunI	CAATTG	1 cut(s)	765
Mva1269I	GAATGC	2 cut(s)	20, 228
MvaI	CCWGG	2 cut(s)	403, 713
MwoI	GCNNNNNNNGC	2 cut(s)	17, 740
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	3 cut(s)	46, 525, 574
NlaIV	GGNNCC	1 cut(s)	659
NmuCI	GTSAC	2 cut(s)	274, 371
NsbI	TGCGCA	1 cut(s)	19
NsiI	ATGCAT	3 cut(s)	6, 697, 745
NspI	RCATGY	3 cut(s)	8, 263, 838
OliI	CACNNNNGTG	1 cut(s)	392
PagI	TCATGA	1 cut(s)	920
PciI	ACATGT	1 cut(s)	259
PctI	GAATGC	2 cut(s)	20, 228
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	350, 406
PkrI	GCNGC	1 cut(s)	794
PleI	GAGTC	3 cut(s)	153, 632, 813
PpsI	GAGTC	3 cut(s)	153, 632, 813
PscI	ACATGT	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	401, 711
PspGI	CCWGG	2 cut(s)	401, 711
PspN4I	GGNNCC	1 cut(s)	659
PspPI	GGNCC	1 cut(s)	657
PstNI	CAGNNNCTG	1 cut(s)	852
PvuII	CAGCTG	1 cut(s)	795
RseI	CAYNNNNRTG	2 cut(s)	264, 392
SalI	GTCGAC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	218, 246
SatI	GCNGC	1 cut(s)	793
Sau3AI	GATC	3 cut(s)	46, 525, 574
Sau96I	GGNCC	1 cut(s)	657
SchI	GAGTC	3 cut(s)	154, 633, 813
ScrFI	CCNGG	3 cut(s)	142, 403, 713
SfaNI	GCATC	3 cut(s)	682, 704, 730
SfcI	CTRYAG	1 cut(s)	829
SmiMI	CAYNNNNRTG	2 cut(s)	264, 392
Sse9I	AATT	9 cut(s)	219, 331, 448, 532, 665, 752, 765, 786, 861
SspMI	CTAG	2 cut(s)	560, 633
StyD4I	CCNGG	3 cut(s)	140, 401, 711
TaaI	ACNGT	2 cut(s)	653, 854
TaqI	TCGA	4 cut(s)	49, 70, 191, 211
TasI	AATT	9 cut(s)	219, 331, 448, 532, 665, 752, 765, 786, 861
TfiI	GAWTC	2 cut(s)	350, 406
Tru1I	TTAA	2 cut(s)	218, 246
Tru9I	TTAA	2 cut(s)	218, 246
TscAI	CASTG	3 cut(s)	169, 394, 459
TseFI	GTSAC	2 cut(s)	274, 371
TseI	GCWGC	1 cut(s)	792
Tsp45I	GTSAC	2 cut(s)	274, 371
TspDTI	ATGAA	3 cut(s)	107, 407, 502
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	3 cut(s)	169, 394, 459
XapI	RAATTY	5 cut(s)	331, 448, 665, 752, 786
XceI	RCATGY	3 cut(s)	8, 263, 838
XmiI	GTMKAC	3 cut(s)	70, 398, 828
XmnI	GAANNNNTTC	1 cut(s)	349
XspI	CTAG	2 cut(s)	560, 633
Zsp2I	ATGCAT	3 cut(s)	6, 697, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.