RLG00000009952

DNA-directed primase polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001804
Physical Location & Seq
Reverse (-)
60914717 .. 60917045
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009952

Sequence Viewer

Length: 411 bp
ATGGTATGTTCGCAGGGTTCAGATGATGAGAAAGGTGATGAGAGTGGTCATGCAACCGGGAGTCAGAATGAGAACCCCAGTGTCAATCCCAAATCTTCAGGAAACTCAAAAAATGCAAAGTTCTCTCGACATTTAATTATTCGCATTCAGAATCGTTGTTTTCGTTTAGCTCTATCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTACTGGGCGCTTCAAAACTAAGGACATGATGGTCAACCCTAGTTTTGGAAAATCTTACAGTTGGCCCCAAGAATTTGCTTTGAATGGTTGCACCAGTGATGCTTCAGCAACATACTTCCTGGGGAAATCTCCATTTCCAGCTTTGGATGCATTTGTAGAATTTGTTGCTACAATTGGAAATGTCTCAGGTGCTAACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Herpes_UL52

Protein Analysis

137

Amino Acids

14.57

Weight (kDa)

9.1

Isoelectric Point (pI)

28.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AcsI RAATTY 3 cut(s) 193, 281, 368
AcuI CTGAAG 2 cut(s) 81, 297
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 2 cut(s) 223, 292
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 2 cut(s) 170, 350
AluI AGCT 2 cut(s) 170, 350
Alw26I GTCTC 1 cut(s) 397
AoxI GGCC 1 cut(s) 272
ApoI RAATTY 3 cut(s) 193, 281, 368
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 273
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 47
BccI CCATC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 58, 329
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 2 cut(s) 58, 329
BmrI ACTGGG 2 cut(s) 72, 222
BmsI GCATC 2 cut(s) 298, 346
BmuI ACTGGG 2 cut(s) 72, 222
BpuMI CCSGG 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 328
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 78, 217, 303
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 3 cut(s) 78, 217, 303
BshFI GGCC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 397
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 1 cut(s) 274
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 407
BspLI GGNNCC 1 cut(s) 275
BsrI ACTGG 3 cut(s) 78, 217, 303
BssECI CCNNGG 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 228, 394
BstF5I GGATG 1 cut(s) 361
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 397
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 56, 327
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 3 cut(s) 85, 204, 310
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 273
CviAII CATG 2 cut(s) 50, 235
CviJI RGCY 3 cut(s) 170, 274, 350
CviKI_1 RGCY 3 cut(s) 170, 274, 350
DdeI CTNAG 2 cut(s) 228, 394
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco57I CTGAAG 2 cut(s) 81, 297
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 361
FaeI CATG 2 cut(s) 53, 238
FaiI YATR 4 cut(s) 7, 51, 236, 322
FatI CATG 2 cut(s) 49, 234
FokI GGATG 1 cut(s) 368
FspBI CTAG 1 cut(s) 249
GlaI GCGC 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 219
Hin1II CATG 2 cut(s) 53, 238
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 2 cut(s) 61, 151
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 22, 66, 150
Hpy188III TCNNGA 2 cut(s) 99, 126
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 53, 116, 300, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 228, 394
Hsp92II CATG 2 cut(s) 53, 238
HspAI GCGC 1 cut(s) 217
LweI GCATC 2 cut(s) 298, 346
MaeI CTAG 1 cut(s) 249
MboII GAAGA 2 cut(s) 87, 202
MfeI CAATTG 1 cut(s) 381
MluCI AATT 5 cut(s) 135, 193, 281, 368, 381
MlyI GAGTC 1 cut(s) 70
Mph1103I ATGCAT 1 cut(s) 361
MseI TTAA 1 cut(s) 134
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 58, 329
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 144
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 356
NciI CCSGG 1 cut(s) 58
NlaIII CATG 2 cut(s) 53, 238
NlaIV GGNNCC 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PctI GAATGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 151
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 58, 329
SetI ASST 5 cut(s) 37, 172, 211, 352, 400
SfaNI GCATC 2 cut(s) 298, 346
Sse9I AATT 5 cut(s) 135, 193, 281, 368, 381
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 56, 327
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 127
TasI AATT 5 cut(s) 135, 193, 281, 368, 381
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 3 cut(s) 85, 204, 310
TspRI CASTG 3 cut(s) 85, 204, 310
XapI RAATTY 3 cut(s) 193, 281, 368
XspI CTAG 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.