Rorug07G0277400

DNA-directed primase polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001804
Physical Location & Seq
Reverse (-)
26544467 .. 26545639
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0277400.1

Sequence Viewer

Length: 1173 bp
ATGTACAAGAAACCCACCTTAGCTCGCTTTCACCAACTTCTCAAAACCCCATTTCAGCAAACACCTTGTATGTGGGTGTCAGTAAAGCACAGACACAGCGGAGGAAGAAGACCCAAGAAGAGAGTCTACCACAGGGACCATGACCTTGACAAAGCCATGGACTTGCGGAAGAAGCCTGCCTTGATTTTACAGCTCAAATCCATTATTCAGTCACACAAGCACCAATCTTTACTTCTCAGGGACCTCGAGAAGGAAGTTGGGTTTGTTCACAAGTGGAATTTCATGGCTGTTATAGAGAAAAATCCTTCAATTTTCTATGTTGGTGGTGGCAATAGAATGCCCCCTTTTGTTCAGCTCACTGAAAAAGCTGAAAGGGTTGCTAGGGAACAAGCTGAAGCTAAGCAGTTGATGGAACCCATTTTGGTTAAGAATCTAAGGAAATTGTTAATGTTGTCAGTTGATTGCAGGGTTCCACTCGAATCGATTGATTTCGTTCAATGTGAATTGGGTTTGCCGGATGATTTCAGAAAGTCATTGATTCCAAAGTACCCTGAATTTTTTTCAGTTAAGGATGTCAGTGGAAGAGCCTATCTTCATTTGGAGAATTGGGATTCTTCCCTAGCAGTCACAGCTCGTGAGGAACGATTAGCTAGTGATGGGATTGTGGCCTCTGATGGAGTGGGAAAGAATTTTAGAATATCGAAAGATGGTAATTTTCGAGGTCCACAAGCCTTTACAATGAGGTTTCCTGCTGGTTTTAGGCCAAATGCAAGTTATCTTGAGCAACTTGAAAAGTGGCAGAAACTCGAATTCCCTTCTCCGTATTTGAATGCAAGGAGGTTCGACATTGCTGATACTAAAGCAAGGAAGCGAGTGGTGGCAGTGCTTCATGAGCTCCTCAGTTTGACTATGGAGAAGAGGATGACATCTGCTCAAATGGAGGCATTTCATTCAGAGTATTTCTTACCTTCCAAATTGCTGCTTTGTTTGATAAAGCATAATGGTATCTTTTACATAACTAATAAAGGTGCAAGGAGTACTGTTTTTCTTAAAGAAGCTTATGATGGGCCAAATTTGATGAACAAATGTCCCATCTTGTTATTCAATGATAAATTTGTAGGACTTAGTGGTAGGAGAGAGATCAATTCATGTAATGTGATGCCTTCTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Herpes_UL52

Protein Analysis

390

Amino Acids

44.99

Weight (kDa)

9.75

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 44 - 378 5.1e-103 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AciI CCGC 2 cut(s) 99, 166
AcsI RAATTY 6 cut(s) 277, 554, 688, 809, 1072, 1112
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 3 cut(s) 5, 548, 1039
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 5 cut(s) 309, 497, 791, 829, 1105
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
Alw21I GWGCWC 1 cut(s) 897
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 3 cut(s) 666, 761, 1067
ApeKI GCWGC 1 cut(s) 979
ApoI RAATTY 6 cut(s) 277, 554, 688, 809, 1072, 1112
AspS9I GGNCC 4 cut(s) 136, 241, 722, 1067
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 3 cut(s) 136, 241, 722
BanII GRGCYC 1 cut(s) 897
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
BauI CACGAG 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 897
BbvI GCAGC 1 cut(s) 966
BccI CCATC 6 cut(s) 403, 650, 668, 701, 1058, 1100
BfaI CTAG 3 cut(s) 381, 620, 651
BisI GCNGC 1 cut(s) 980
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 981
BmcAI AGTACT 1 cut(s) 1039
Bme18I GGWCC 3 cut(s) 136, 241, 722
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 4 cut(s) 136, 241, 722, 1067
BmiI GGNNCC 4 cut(s) 137, 242, 414, 471
BmsI GCATC 1 cut(s) 1149
BpiI GAAGAC 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 19
Bpu1102I GCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 800
Bsa29I ATCGAT 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 846
BseCI ATCGAT 1 cut(s) 482
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 3 cut(s) 523, 577, 927
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 2 cut(s) 250, 913
BseRI GAGGAG 1 cut(s) 887
BseXI GCAGC 1 cut(s) 966
BshFI GGCC 3 cut(s) 668, 763, 1069
BshVI ATCGAT 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 897
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 515
BslFI GGGAC 3 cut(s) 149, 254, 1074
BslI CCNNNNNNNGG 1 cut(s) 250
BsmFI GGGAC 3 cut(s) 149, 254, 1074
BsmI GAATGC 2 cut(s) 342, 835
BsnI GGCC 3 cut(s) 668, 763, 1069
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 897
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 1140
Bsp1720I GCTNAGC 1 cut(s) 399
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 2 cut(s) 99, 166
BspANI GGCC 3 cut(s) 668, 763, 1069
BspCNI CTCAG 2 cut(s) 249, 912
BspDI ATCGAT 1 cut(s) 482
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 4 cut(s) 137, 242, 414, 471
BspQI GCTCTTC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 846
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 1140
BssSI CACGAG 1 cut(s) 633
BssT1I CCWWGG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 633
Bst4CI ACNGT 1 cut(s) 1042
Bst6I CTCTTC 3 cut(s) 113, 577, 911
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 25, 177
BstDEI CTNAG 6 cut(s) 19, 236, 399, 434, 899, 1124
BstDSI CCRYGG 1 cut(s) 156
BstENI CCTNNNNNAGG 1 cut(s) 248
BstF5I GGATG 3 cut(s) 523, 577, 927
BstKTI GATC 1 cut(s) 1143
BstMBI GATC 1 cut(s) 1140
BstMWI GCNNNNNNNGC 3 cut(s) 172, 629, 892
BstV1I GCAGC 1 cut(s) 966
BstV2I GAAGAC 1 cut(s) 115
Bsu15I ATCGAT 1 cut(s) 482
BsuRI GGCC 3 cut(s) 668, 763, 1069
BsuTUI ATCGAT 1 cut(s) 482
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 3 cut(s) 523, 577, 927
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 3 cut(s) 357, 583, 888
Cac8I GCNNGC 2 cut(s) 25, 177
CciI TCATGA 1 cut(s) 889
Cfr13I GGNCC 4 cut(s) 136, 241, 722, 1067
ClaI ATCGAT 1 cut(s) 482
Csp6I GTAC 3 cut(s) 4, 547, 1038
CviAII CATG 5 cut(s) 140, 157, 283, 890, 1149
CviQI GTAC 3 cut(s) 4, 547, 1038
DdeI CTNAG 6 cut(s) 19, 236, 399, 434, 899, 1124
DpnI GATC 1 cut(s) 1142
DpnII GATC 1 cut(s) 1140
Eam1104I CTCTTC 3 cut(s) 113, 577, 911
EarI CTCTTC 3 cut(s) 113, 577, 911
Ecl136II GAGCTC 1 cut(s) 895
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 897
Eco47I GGWCC 3 cut(s) 136, 241, 722
Eco53kI GAGCTC 1 cut(s) 895
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 895
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 809
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 897
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 5 cut(s) 143, 160, 286, 893, 1152
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 3 cut(s) 149, 254, 1074
FatI CATG 5 cut(s) 139, 156, 282, 889, 1148
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 980
FokI GGATG 3 cut(s) 530, 584, 934
FriOI GRGCYC 1 cut(s) 897
Fsp4HI GCNGC 1 cut(s) 980
FspBI CTAG 3 cut(s) 381, 620, 651
GluI GCNGC 1 cut(s) 980
HaeIII GGCC 3 cut(s) 668, 763, 1069
HapII CCGG 1 cut(s) 515
Hin1II CATG 5 cut(s) 143, 160, 286, 893, 1152
HindIII AAGCTT 1 cut(s) 1056
HinfI GANTC 5 cut(s) 123, 430, 479, 538, 611
HpaII CCGG 1 cut(s) 515
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 3 cut(s) 127, 268, 725
Hpy188I TCNGA 3 cut(s) 527, 673, 955
Hpy188III TCNNGA 4 cut(s) 247, 635, 779, 890
Hpy8I GTNNAC 3 cut(s) 127, 268, 725
HpyAV CCTTC 5 cut(s) 244, 315, 825, 978, 1173
HpyCH4III ACNGT 1 cut(s) 1042
HpyCH4V TGCA 4 cut(s) 465, 770, 833, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 629, 892
HpyF3I CTNAG 6 cut(s) 19, 236, 399, 434, 899, 1124
Hsp92II CATG 5 cut(s) 143, 160, 286, 893, 1152
Kzo9I GATC 1 cut(s) 1140
LguI GCTCTTC 1 cut(s) 577
LmnI GCTCC 1 cut(s) 900
LpnPI CCDG 8 cut(s) 118, 189, 223, 451, 528, 564, 738, 762
Lsp1109I GCAGC 1 cut(s) 966
LweI GCATC 1 cut(s) 1149
MaeI CTAG 3 cut(s) 381, 620, 651
MaeIII GTNAC 2 cut(s) 210, 625
MalI GATC 1 cut(s) 1142
MboI GATC 1 cut(s) 1140
MboII GAAGA 8 cut(s) 117, 120, 130, 181, 584, 594, 606, 928
MhlI GDGCHC 1 cut(s) 897
MlyI GAGTC 1 cut(s) 132
MseI TTAA 4 cut(s) 426, 446, 567, 1050
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 1 cut(s) 515
Mva1269I GAATGC 2 cut(s) 342, 835
MwoI GCNNNNNNNGC 3 cut(s) 172, 629, 892
NcoI CCATGG 1 cut(s) 156
NdeII GATC 1 cut(s) 1140
NlaIII CATG 5 cut(s) 143, 160, 286, 893, 1152
NlaIV GGNNCC 4 cut(s) 137, 242, 414, 471
NmuCI GTSAC 2 cut(s) 210, 625
PaeR7I CTCGAG 1 cut(s) 245
PagI TCATGA 1 cut(s) 889
PciSI GCTCTTC 1 cut(s) 577
PcsI WCGNNNNNNNCGW 1 cut(s) 640
PctI GAATGC 2 cut(s) 342, 835
PfeI GAWTC 4 cut(s) 430, 479, 538, 611
PkrI GCNGC 1 cut(s) 981
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 897
Psp5II RGGWCCY 1 cut(s) 241
PspN4I GGNNCC 4 cut(s) 137, 242, 414, 471
PspPI GGNCC 4 cut(s) 136, 241, 722, 1067
PspPPI RGGWCCY 1 cut(s) 241
RsaI GTAC 3 cut(s) 5, 548, 1039
RsaNI GTAC 3 cut(s) 4, 547, 1038
SacI GAGCTC 1 cut(s) 897
SapI GCTCTTC 1 cut(s) 577
SaqAI TTAA 4 cut(s) 426, 446, 567, 1050
SatI GCNGC 1 cut(s) 980
Sau3AI GATC 1 cut(s) 1140
Sau96I GGNCC 4 cut(s) 136, 241, 722, 1067
ScaI AGTACT 1 cut(s) 1039
SchI GAGTC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 897
SfaNI GCATC 1 cut(s) 1149
Sfr274I CTCGAG 1 cut(s) 245
SinI GGWCC 3 cut(s) 136, 241, 722
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 245, 779
SmoI CTYRAG 2 cut(s) 245, 779
SsiI CCGC 2 cut(s) 99, 166
SspMI CTAG 3 cut(s) 381, 620, 651
SstI GAGCTC 1 cut(s) 897
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 1042
TaqI TCGA 7 cut(s) 246, 477, 482, 701, 718, 807, 843
TatI WGTACW 2 cut(s) 3, 1037
TfiI GAWTC 4 cut(s) 430, 479, 538, 611
Tru1I TTAA 4 cut(s) 426, 446, 567, 1050
Tru9I TTAA 4 cut(s) 426, 446, 567, 1050
TscAI CASTG 3 cut(s) 364, 583, 888
TseFI GTSAC 2 cut(s) 210, 625
TseI GCWGC 1 cut(s) 979
Tsp45I GTSAC 2 cut(s) 210, 625
TspDTI ATGAA 6 cut(s) 271, 584, 878, 938, 1094, 1137
TspGWI ACGGA 1 cut(s) 810
TspRI CASTG 3 cut(s) 364, 583, 888
VpaK11BI GGWCC 3 cut(s) 136, 241, 722
XagI CCTNNNNNAGG 1 cut(s) 248
XapI RAATTY 6 cut(s) 277, 554, 688, 809, 1072, 1112
XhoI CTCGAG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 3 cut(s) 381, 620, 651
ZrmI AGTACT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.