Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Reverse (-)

49436332 .. 49438981

Gene Structure 2650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45963

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCTTGGTCAGGGTGGTTCTACAACAGTCGAAGCAAAAAGCTTTAATCGTAGGAAGCAGTTATCTCCAGTTGTATTTTACGGGTCTCCACATGGTGTACCTCCAAAGCAACCATCAAGGTTGTTGCTGCAAGTGTTACGTGAGATACGTGTTGATCTCACTGCACAGAAACGATTGAGCTCAAGGAAGGAAGTATGGGCTACATTTCCAAGGCAGGAGGAAGCAATGCAGTTTGCCAAACGGCACGAGAATGTTCACGTTTTTAGTTATCAAGATCACTTTAGTGGACAAAGAAGGTTCCTTGTTTCAAGTTATGATGAGTTTTGGAGAAGGTACAAAATTATGGAGTCCAAGTTTCGTCACCATTACGAAGTCATTCAGGAGGATTTACCATGCCACCTTTATTTTGACCTGGAGTTCAATAAGAAAGACAATGGAAACAGAAATGGAGATGAAATGGTTGATCTTTTAATATCAGTTGTTTTTGAAGCCTTGCTTGAAAAGTATTCTATTCAGGGGAACATGGAATGGATATTGGAACTTGATTCCTCTACTGAAGTAAAGTTCTCTCGACATTTAATTATTCGCATTCAGAAGACTGCTTTTAAGGACAACTCACATGTAGGTGCATTTGTCACTGAGATATGCTCACGGATATCAAGTGCAAAAGGGAGGGATGGAAGATTTGAGAATTTGTCTATTAGAAAAGATTCAAGCTCTGCAGACTTTAGTCACCTATTTGTGGACACTGCTGTGTATACCAGGAATCGTTGTTTTCTTTTAGCTCTATCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTACTGGGTGCTTCAAAGCTAAGGACATGATGCGTCTGAAGAGGAGATGTTCATGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAGTGATGCTTCAGCAACATACTTCCTGGGGAAATCTCCATTTCCAGCTTTGGATGCATTTGTAGAATTTGTTGCTACAATTGGAAATGTCTCAGGCTATCATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

339

Amino Acids

38.97

Weight (kDa)

9.22

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	758
AcsI	RAATTY	4 cut(s)	691, 808, 890, 977
AcuI	CTGAAG	3 cut(s)	576, 881, 906
AdeI	CACNNNGTG	1 cut(s)	95
AfaI	GTAC	2 cut(s)	99, 335
AfiI	CCNNNNNNNGG	1 cut(s)	742
AflIII	ACRYGT	2 cut(s)	148, 619
AgsI	TTSAA	7 cut(s)	309, 421, 488, 500, 714, 838, 901
AjnI	CCWGG	3 cut(s)	411, 761, 936
AleI	CACNNNNGTG	2 cut(s)	282, 752
AluBI	AGCT	6 cut(s)	42, 180, 717, 785, 842, 959
AluI	AGCT	6 cut(s)	42, 180, 717, 785, 842, 959
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	2 cut(s)	90, 1006
AoxI	GGCC	1 cut(s)	881
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	4 cut(s)	691, 808, 890, 977
Asp700I	GAANNNNTTC	2 cut(s)	375, 709
AspS9I	GGNCC	1 cut(s)	882
AsuHPI	GGTGA	2 cut(s)	353, 725
BanII	GRGCYC	1 cut(s)	182
BauI	CACGAG	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	2 cut(s)	121, 671
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	3 cut(s)	413, 763, 938
BcoDI	GTCTC	2 cut(s)	90, 1006
BfmI	CTRYAG	1 cut(s)	720
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	3 cut(s)	413, 763, 938
BmgT120I	GGNCC	1 cut(s)	882
BmiI	GGNNCC	2 cut(s)	299, 884
BmrFI	CCNGG	3 cut(s)	413, 763, 938
BmrI	ACTGGG	1 cut(s)	837
BmsI	GCATC	3 cut(s)	843, 907, 955
BmuI	ACTGGG	1 cut(s)	837
BoxI	GACNNNNGTC	1 cut(s)	729
BpiI	GAAGAC	1 cut(s)	602
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
BpmI	CTGGAG	2 cut(s)	51, 434
Bpu10I	CCTNAGC	1 cut(s)	843
BpuEI	CTTGAG	1 cut(s)	166
BsaAI	YACGTR	2 cut(s)	140, 149
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	209, 937
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	742
Bse1I	ACTGG	3 cut(s)	68, 832, 912
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	3 cut(s)	413, 763, 938
BseDI	CCNNGG	2 cut(s)	209, 937
BseGI	GGATG	2 cut(s)	682, 970
BseLI	CCNNNNNNNGG	1 cut(s)	742
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	630, 1017
BseNI	ACTGG	3 cut(s)	68, 832, 912
BseRI	GAGGAG	1 cut(s)	880
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	883
BsiHKAI	GWGCWC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	742
BsmAI	GTCTC	2 cut(s)	90, 1006
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	883
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	154, 274, 463
BspANI	GGCC	1 cut(s)	883
BspCNI	CTCAG	2 cut(s)	631, 1016
BspLI	GGNNCC	2 cut(s)	299, 884
BspMAI	CTGCAG	1 cut(s)	724
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	3 cut(s)	68, 832, 912
BssECI	CCNNGG	2 cut(s)	209, 937
BssMI	GATC	3 cut(s)	154, 274, 463
BssNAI	GTATAC	1 cut(s)	759
BssSI	CACGAG	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	209
Bst1107I	GTATAC	1 cut(s)	759
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	3 cut(s)	413, 763, 938
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	857
BstBAI	YACGTR	2 cut(s)	140, 149
BstDEI	CTNAG	3 cut(s)	639, 843, 1003
BstF5I	GGATG	2 cut(s)	682, 970
BstKTI	GATC	3 cut(s)	157, 277, 466
BstMAI	GTCTC	2 cut(s)	90, 1006
BstMBI	GATC	3 cut(s)	154, 274, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	965
BstNI	CCWGG	3 cut(s)	413, 763, 938
BstNSI	RCATGY	1 cut(s)	623
BstPAI	GACNNNNGTC	1 cut(s)	729
BstSCI	CCNGG	3 cut(s)	411, 761, 936
BstSFI	CTRYAG	1 cut(s)	720
BstV1I	GCAGC	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	602
BstZ17I	GTATAC	1 cut(s)	759
BsuRI	GGCC	1 cut(s)	883
BtsCI	GGATG	2 cut(s)	682, 970
BtsI	GCAGTG	2 cut(s)	159, 747
BtsIMutI	CAGTG	5 cut(s)	159, 636, 747, 819, 919
Cfr13I	GGNCC	1 cut(s)	882
CseI	GACGC	1 cut(s)	845
Csp6I	GTAC	2 cut(s)	98, 334
CviAII	CATG	6 cut(s)	92, 393, 523, 620, 850, 876
CviQI	GTAC	2 cut(s)	98, 334
DdeI	CTNAG	3 cut(s)	639, 843, 1003
DpnI	GATC	3 cut(s)	156, 276, 465
DpnII	GATC	3 cut(s)	154, 274, 463
DraIII	CACNNNGTG	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	857
EarI	CTCTTC	1 cut(s)	857
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	657
Eco53kI	GAGCTC	1 cut(s)	180
Eco57I	CTGAAG	3 cut(s)	576, 881, 906
EcoICRI	GAGCTC	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	808
EcoRII	CCWGG	3 cut(s)	411, 761, 936
EcoRV	GATATC	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	209
EcoT22I	ATGCAT	1 cut(s)	970
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	6 cut(s)	95, 396, 526, 623, 853, 879
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FatI	CATG	6 cut(s)	91, 392, 522, 619, 849, 875
FblI	GTMKAC	1 cut(s)	758
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	2 cut(s)	689, 977
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	128
GsuI	CTGGAG	2 cut(s)	51, 434
HaeIII	GGCC	1 cut(s)	883
HgaI	GACGC	1 cut(s)	845
Hin1II	CATG	6 cut(s)	95, 396, 526, 623, 853, 879
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	4 cut(s)	347, 545, 710, 766
HphI	GGTGA	2 cut(s)	353, 725
Hpy166II	GTNNAC	5 cut(s)	98, 256, 287, 745, 759
Hpy188I	TCNGA	2 cut(s)	594, 861
Hpy188III	TCNNGA	3 cut(s)	272, 380, 570
Hpy8I	GTNNAC	5 cut(s)	98, 256, 287, 745, 759
HpyAV	CCTTC	3 cut(s)	181, 288, 324
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	3 cut(s)	139, 148, 258
HpyCH4V	TGCA	9 cut(s)	130, 164, 229, 629, 665, 722, 896, 909, 968
HpyF10VI	GCNNNNNNNGC	1 cut(s)	965
HpyF3I	CTNAG	3 cut(s)	639, 843, 1003
HpySE526I	ACGT	3 cut(s)	139, 148, 258
Hsp92II	CATG	6 cut(s)	95, 396, 526, 623, 853, 879
Kzo9I	GATC	3 cut(s)	154, 274, 463
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	3 cut(s)	843, 907, 955
MaeII	ACGT	3 cut(s)	139, 148, 258
MaeIII	GTNAC	4 cut(s)	135, 359, 634, 731
MalI	GATC	3 cut(s)	156, 276, 465
MboI	GATC	3 cut(s)	154, 274, 463
MboII	GAAGA	4 cut(s)	607, 693, 817, 874
MfeI	CAATTG	1 cut(s)	990
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	7 cut(s)	339, 579, 691, 808, 890, 977, 990
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	6 cut(s)	111, 211, 376, 559, 666, 858
Mph1103I	ATGCAT	1 cut(s)	970
MroXI	GAANNNNTTC	2 cut(s)	375, 709
MseI	TTAA	4 cut(s)	45, 470, 578, 606
MslI	CAYNNNNRTG	4 cut(s)	249, 282, 624, 752
MspR9I	CCNGG	3 cut(s)	413, 763, 938
MunI	CAATTG	1 cut(s)	990
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	3 cut(s)	413, 763, 938
MwoI	GCNNNNNNNGC	1 cut(s)	965
NdeII	GATC	3 cut(s)	154, 274, 463
NlaIII	CATG	6 cut(s)	95, 396, 526, 623, 853, 879
NlaIV	GGNNCC	2 cut(s)	299, 884
NmuCI	GTSAC	3 cut(s)	359, 634, 731
NsiI	ATGCAT	1 cut(s)	970
NspI	RCATGY	1 cut(s)	623
OliI	CACNNNNGTG	2 cut(s)	282, 752
PciI	ACATGT	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PctI	GAATGC	1 cut(s)	588
PdmI	GAANNNNTTC	2 cut(s)	375, 709
PfeI	GAWTC	3 cut(s)	545, 710, 766
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Ppu21I	YACGTR	2 cut(s)	140, 149
PscI	ACATGT	1 cut(s)	619
PshAI	GACNNNNGTC	1 cut(s)	729
Psp124BI	GAGCTC	1 cut(s)	182
Psp6I	CCWGG	3 cut(s)	411, 761, 936
PspGI	CCWGG	3 cut(s)	411, 761, 936
PspN4I	GGNNCC	2 cut(s)	299, 884
PspPI	GGNCC	1 cut(s)	882
PstI	CTGCAG	1 cut(s)	724
RsaI	GTAC	2 cut(s)	99, 335
RsaNI	GTAC	2 cut(s)	98, 334
RseI	CAYNNNNRTG	4 cut(s)	249, 282, 624, 752
SacI	GAGCTC	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	45, 470, 578, 606
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	3 cut(s)	154, 274, 463
Sau96I	GGNCC	1 cut(s)	882
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	413, 763, 938
SduI	GDGCHC	1 cut(s)	182
SfaNI	GCATC	3 cut(s)	843, 907, 955
SfcI	CTRYAG	1 cut(s)	720
SmiMI	CAYNNNNRTG	4 cut(s)	249, 282, 624, 752
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	7 cut(s)	339, 579, 691, 808, 890, 977, 990
SstI	GAGCTC	1 cut(s)	182
StyD4I	CCNGG	3 cut(s)	411, 761, 936
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	3 cut(s)	142, 151, 261
TaqI	TCGA	2 cut(s)	30, 571
TasI	AATT	7 cut(s)	339, 579, 691, 808, 890, 977, 990
TfiI	GAWTC	3 cut(s)	545, 710, 766
Tru1I	TTAA	4 cut(s)	45, 470, 578, 606
Tru9I	TTAA	4 cut(s)	45, 470, 578, 606
TscAI	CASTG	5 cut(s)	166, 643, 754, 819, 919
TseFI	GTSAC	3 cut(s)	359, 634, 731
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	3 cut(s)	359, 634, 731
TspDTI	ATGAA	2 cut(s)	468, 864
TspGWI	ACGGA	1 cut(s)	667
TspRI	CASTG	5 cut(s)	166, 643, 754, 819, 919
XapI	RAATTY	4 cut(s)	691, 808, 890, 977
XceI	RCATGY	1 cut(s)	623
XmiI	GTMKAC	1 cut(s)	758
XmnI	GAANNNNTTC	2 cut(s)	375, 709
Zsp2I	ATGCAT	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.