Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Forward (+)

17170697 .. 17171490

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG098500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATGACATATTATCATATATGCTCACGGATATCAAGTGCAAAAGGGAGGGATGGAAGATTTGAGAATCTGTTTATTAGAAAAGATGCAAGCTCTGCATACTTTAGTCACCTATTTGTGGACACTGCTGTGTATACCAGGAATCGTTGTTTTCGTTTAGCTCTATCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTACTAGGCGCTTCAAAACTAAGGACATGATGTCTGAAGAGGAGATGTTCATGGCGTCTTTGATCTGCAATTTGGAAGTTGATTGTGGGAAGCTTCTAGTCTGCAAATCTGATCTTGATTGTATAAAGACCCTGCATTTTGATACACAGAGGTATATTAGAGTCAACCCTAGTTTTGGAAAATCTTACAGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAATGATGCTTCAGCAACATACTTCCTAGGGAAATCTCCATTTCCAGCTTTGGATGCATTTGTAGAATTTGTTGCTACATTTGGAAATGTCTCAGGTGTTAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

176

Amino Acids

19.92

Weight (kDa)

8.84

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AcsI	RAATTY	3 cut(s)	184, 401, 488
AcuI	CTGAAG	2 cut(s)	255, 417
AcyI	GRCGYC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	118, 374
AgsI	TTSAA	2 cut(s)	214, 412
AhdI	GACNNNNNGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	137
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	93, 161, 292, 470
AluI	AGCT	4 cut(s)	93, 161, 292, 470
Alw26I	GTCTC	1 cut(s)	517
AoxI	GGCC	1 cut(s)	392
ApoI	RAATTY	3 cut(s)	184, 401, 488
AspA2I	CCTAGG	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	393
AsuHPI	GGTGA	1 cut(s)	101
AvrII	CCTAGG	1 cut(s)	448
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	4 cut(s)	204, 296, 369, 449
BfoI	RGCGCY	1 cut(s)	211
BlnI	CCTAGG	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	139
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	3 cut(s)	76, 418, 466
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 374
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	58, 481
BseLI	CCNNNNNNNGG	2 cut(s)	118, 374
BseMII	CTCAG	1 cut(s)	528
BseRI	GAGGAG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	394
BslI	CCNNNNNNNGG	2 cut(s)	118, 374
BsmAI	GTCTC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	261, 310
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	527
BspLI	GGNNCC	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	2 cut(s)	261, 310
BssNAI	GTATAC	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	448
Bst1107I	GTATAC	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	219, 514
BstF5I	GGATG	2 cut(s)	58, 481
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	2 cut(s)	264, 313
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	2 cut(s)	261, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 476
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstZ17I	GTATAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	58, 481
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 195
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	393
CseI	GACGC	1 cut(s)	243
CviAII	CATG	2 cut(s)	226, 250
CviJI	RGCY	5 cut(s)	93, 161, 292, 394, 470
CviKI_1	RGCY	5 cut(s)	93, 161, 292, 394, 470
DdeI	CTNAG	2 cut(s)	219, 514
DpnI	GATC	2 cut(s)	263, 312
DpnII	GATC	2 cut(s)	261, 310
DriI	GACNNNNNGTC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	231
Eam1105I	GACNNNNNGTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	255, 417
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	137
EcoRV	GATATC	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	448
EcoT22I	ATGCAT	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	229, 253
FatI	CATG	2 cut(s)	225, 249
FblI	GTMKAC	1 cut(s)	134
FokI	GGATG	2 cut(s)	65, 488
FspBI	CTAG	4 cut(s)	204, 296, 369, 449
GlaI	GCGC	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	394
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	1 cut(s)	210
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	229, 253
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	2 cut(s)	364, 523
HindII	GTYRAC	2 cut(s)	364, 523
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	3 cut(s)	67, 142, 360
HpaI	GTTAAC	1 cut(s)	523
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	4 cut(s)	121, 135, 364, 523
Hpy188I	TCNGA	2 cut(s)	235, 310
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	4 cut(s)	121, 135, 364, 523
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	9 cut(s)	41, 89, 98, 267, 303, 334, 407, 420, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 476
HpyF3I	CTNAG	2 cut(s)	219, 514
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	229, 253
HspAI	GCGC	1 cut(s)	208
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	261, 310
LpnPI	CCDG	6 cut(s)	124, 151, 162, 344, 480, 501
LweI	GCATC	3 cut(s)	76, 418, 466
MaeI	CTAG	4 cut(s)	204, 296, 369, 449
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	2 cut(s)	263, 312
MboI	GATC	2 cut(s)	261, 310
MboII	GAAGA	3 cut(s)	69, 193, 248
MluCI	AATT	4 cut(s)	184, 268, 401, 488
MlyI	GAGTC	1 cut(s)	369
MnlI	CCTC	3 cut(s)	42, 232, 342
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	95, 476
NdeII	GATC	2 cut(s)	261, 310
NlaIII	CATG	2 cut(s)	229, 253
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	481
OliI	CACNNNNGTG	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	67, 142
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	522
Sau3AI	GATC	2 cut(s)	261, 310
Sau96I	GGNCC	1 cut(s)	393
SchI	GAGTC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	8 cut(s)	95, 114, 163, 202, 294, 353, 472, 520
SfaNI	GCATC	3 cut(s)	76, 418, 466
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	4 cut(s)	184, 268, 401, 488
SspMI	CTAG	4 cut(s)	204, 296, 369, 449
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	389
TasI	AATT	4 cut(s)	184, 268, 401, 488
TfiI	GAWTC	2 cut(s)	67, 142
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	2 cut(s)	130, 195
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	238
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	2 cut(s)	130, 195
XapI	RAATTY	3 cut(s)	184, 401, 488
XmaJI	CCTAGG	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	4 cut(s)	204, 296, 369, 449
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.