Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000289.1

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Reverse (-)

38116 .. 40150

Gene Structure 2035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000289.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgagctcggttcttttgcgaaaggctaggaaccagtatacttggaaagggtttagggcaatccctaatgctttacaggagctaaaggaagagggtctgaaagagaacttcaatactttccacggcaatttccagggcaatgatgatccaaaatgttcgcagggttcagatgatgagaaaggtgatgagagtgggattcctctactgaaggctctatcatcaaaggcagggaagaatttagtgcttctacctactgggcgcttcaaagctaaggacatgatggtcaaccctagttttggaaaatcttacagttggccccaagaatttgcattgaatggttgcaccagtgatgcttcagcaacatacttcctggggaaatctccatttccagctttggatgcatttgtagaatttgttgctacaattggaaatgtctcaggtgctaacttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

150

Amino Acids

16.33

Weight (kDa)

7.72

Isoelectric Point (pI)

24.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	3 cut(s)	235, 323, 410
AcuI	CTGAAG	2 cut(s)	227, 339
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	112, 265, 334
AjnI	CCWGG	2 cut(s)	132, 369
AluBI	AGCT	4 cut(s)	6, 82, 269, 392
AluI	AGCT	4 cut(s)	6, 82, 269, 392
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	314
ApoI	RAATTY	3 cut(s)	235, 323, 410
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	134, 371
BcoDI	GTCTC	1 cut(s)	439
BfaI	CTAG	2 cut(s)	27, 291
BfoI	RGCGCY	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	134, 371
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	2 cut(s)	32, 317
BmrFI	CCNGG	2 cut(s)	134, 371
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	2 cut(s)	340, 388
BmuI	ACTGGG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	121, 133, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	3 cut(s)	34, 259, 345
Bse3DI	GCAATG	1 cut(s)	145
BseBI	CCWGG	2 cut(s)	134, 371
BseDI	CCNNGG	3 cut(s)	121, 133, 370
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	3 cut(s)	34, 259, 345
BshFI	GGCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	449
BspLI	GGNNCC	2 cut(s)	32, 317
BspPI	GGATC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	3 cut(s)	34, 259, 345
BssECI	CCNNGG	3 cut(s)	121, 133, 370
BssMI	GATC	1 cut(s)	145
BssNAI	GTATAC	1 cut(s)	39
Bst1107I	GTATAC	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	134, 371
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	270, 436
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	403
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	2 cut(s)	134, 371
BstSCI	CCNGG	2 cut(s)	132, 369
BstZ17I	GTATAC	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	352
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	315
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	7 cut(s)	6, 26, 82, 212, 269, 316, 392
CviKI_1	RGCY	7 cut(s)	6, 26, 82, 212, 269, 316, 392
DdeI	CTNAG	2 cut(s)	270, 436
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	227, 339
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	132, 369
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	1 cut(s)	280
FaiI	YATR	3 cut(s)	39, 278, 364
FatI	CATG	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	38
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	8
FspBI	CTAG	2 cut(s)	27, 291
GlaI	GCGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	196
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	39, 286
Hpy188I	TCNGA	2 cut(s)	99, 169
Hpy8I	GTNNAC	2 cut(s)	39, 286
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	3 cut(s)	329, 342, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	270, 436
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	79
LweI	GCATC	2 cut(s)	340, 388
MaeI	CTAG	2 cut(s)	27, 291
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	101, 244
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	127, 235, 323, 410, 423
MnlI	CCTC	2 cut(s)	85, 210
Mph1103I	ATGCAT	1 cut(s)	403
MspR9I	CCNGG	2 cut(s)	134, 371
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	134, 371
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	32, 317
NsiI	ATGCAT	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	132, 369
PspGI	CCWGG	2 cut(s)	132, 369
PspN4I	GGNNCC	2 cut(s)	32, 317
PspPI	GGNCC	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	315
ScrFI	CCNGG	2 cut(s)	134, 371
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	8, 84, 184, 253, 271, 394, 442
SfaNI	GCATC	2 cut(s)	340, 388
Sse9I	AATT	5 cut(s)	127, 235, 323, 410, 423
SspMI	CTAG	2 cut(s)	27, 291
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	132, 369
TaaI	ACNGT	1 cut(s)	311
TasI	AATT	5 cut(s)	127, 235, 323, 410, 423
TfiI	GAWTC	1 cut(s)	196
TscAI	CASTG	1 cut(s)	352
TspRI	CASTG	1 cut(s)	352
XapI	RAATTY	3 cut(s)	235, 323, 410
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	2 cut(s)	27, 291
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.