Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Reverse (-)

13023653 .. 13025926

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG077900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGTGGAGATTTGGGGATACCTGCGTTCCCTGAAGAAGACTGCATTCTTCAAGAAAGGTTAATACCTCAGGATCAGTTGATGAGCTCGGTTCTTTTGCGAAAGGCTAGGAACCAGTATACTTGGAAAGGGTTTGGGGCAATCCCTAATGCTTTACAGGAGCTAAAGGAAGAGGGTCTGGAAGAGAACTTCAATACTTTCCAAGGCAATTTCCAGGGCAATGATGATCCAAAATGTTCGCAGGGTTCAGATGATGAGAAAGGTGATGAGCGTGGTCATGCAACCGGGAGTCAGAATGAGAACCCCAGTGTCAATCCCAAATCTTCAGGAAACTCAAAAAATGCAAAGTTCTCTCGACATTTAATTATTCGCATTCAGAAGACTGCTTTTAAGGACAACTCACATGTAGGTGCATTTGTCACCGAGAAATACCAACTCTTGTCACTATATGATGACATATTATCATATATGCTCACGGATATCAAGAATCGTTGTTTTCGTTTAGCTCTATCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTACTAGGCGCTTCAAAACTAAGGACATGATGCAGTCTGAAGAGGAGATGTTCATGGCATCTTTGATCTGCAATTTGGAAGTTGATTGTGGGAAGCTTCTAGTCTGCAAATCTGATCTTGATTGTATAAAGACCCTGCATTTTGATACACAGAGGTCAACCCTAGTTTTGGAAAATCTTACAGTTGGCCCCAAGAATTTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

249

Amino Acids

27.99

Weight (kDa)

6.0

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	119
AclWI	GGATC	2 cut(s)	81, 221
AcsI	RAATTY	2 cut(s)	529, 739
AcuI	CTGAAG	3 cut(s)	54, 309, 603
AfiI	CCNNNNNNNGG	1 cut(s)	712
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	53, 193, 559
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	4 cut(s)	87, 163, 506, 640
AluI	AGCT	4 cut(s)	87, 163, 506, 640
Alw21I	GWGCWC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	81, 221
AoxI	GGCC	1 cut(s)	730
ApoI	RAATTY	2 cut(s)	529, 739
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	1 cut(s)	731
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	275, 412
AxyI	CCTNAGG	1 cut(s)	69
BaeI	ACNNNNGTAYC	2 cut(s)	11, 44
BanII	GRGCYC	1 cut(s)	89
BbsI	GAAGAC	2 cut(s)	45, 386
Bbv12I	GWGCWC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	286
BfaI	CTAG	4 cut(s)	108, 549, 644, 707
BfoI	RGCGCY	1 cut(s)	556
BfuAI	ACCTGC	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	215, 286
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	2 cut(s)	113, 733
BmrFI	CCNGG	2 cut(s)	215, 286
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	564, 611
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	2 cut(s)	45, 386
BpuMI	CCSGG	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	202, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	712
Bse1I	ACTGG	2 cut(s)	115, 306
Bse21I	CCTNAGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	202, 214
BseLI	CCNNNNNNNGG	1 cut(s)	712
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	115, 306
BseRI	GAGGAG	1 cut(s)	602
BshFI	GGCC	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	712
BsmI	GAATGC	2 cut(s)	45, 372
BsnI	GGCC	1 cut(s)	732
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	4 cut(s)	73, 226, 609, 658
BspANI	GGCC	1 cut(s)	732
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	113, 733
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	81, 221
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	115, 306
BssECI	CCNNGG	2 cut(s)	202, 214
BssMI	GATC	4 cut(s)	73, 226, 609, 658
BssNAI	GTATAC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	202
Bst1107I	GTATAC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	727
Bst6I	CTCTTC	3 cut(s)	165, 177, 579
BstDEI	CTNAG	2 cut(s)	69, 564
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	4 cut(s)	76, 229, 612, 661
BstMBI	GATC	4 cut(s)	73, 226, 609, 658
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	2 cut(s)	213, 284
BstV2I	GAAGAC	2 cut(s)	45, 386
BstZ17I	GTATAC	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	732
BtsIMutI	CAGTG	2 cut(s)	313, 540
BveI	ACCTGC	1 cut(s)	31
CfoI	GCGC	1 cut(s)	555
Cfr13I	GGNCC	1 cut(s)	731
CviAII	CATG	4 cut(s)	278, 404, 571, 598
CviJI	RGCY	6 cut(s)	87, 107, 163, 506, 640, 732
CviKI_1	RGCY	6 cut(s)	87, 107, 163, 506, 640, 732
DdeI	CTNAG	2 cut(s)	69, 564
DpnI	GATC	4 cut(s)	75, 228, 611, 660
DpnII	GATC	4 cut(s)	73, 226, 609, 658
Eam1104I	CTCTTC	3 cut(s)	165, 177, 579
EarI	CTCTTC	3 cut(s)	165, 177, 579
Ecl136II	GAGCTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	89
Eco32I	GATATC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	87
Eco57I	CTGAAG	3 cut(s)	54, 309, 603
Eco81I	CCTNAGG	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	4 cut(s)	281, 407, 574, 601
FatI	CATG	4 cut(s)	277, 403, 570, 597
FblI	GTMKAC	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	89
FspBI	CTAG	4 cut(s)	108, 549, 644, 707
GlaI	GCGC	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	1 cut(s)	732
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	555
Hin1II	CATG	4 cut(s)	281, 407, 574, 601
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	2 cut(s)	289, 487
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	275, 412
Hpy166II	GTNNAC	2 cut(s)	120, 702
Hpy188I	TCNGA	5 cut(s)	250, 294, 378, 583, 658
Hpy188III	TCNNGA	7 cut(s)	53, 71, 179, 327, 354, 484, 662
Hpy8I	GTNNAC	2 cut(s)	120, 702
HpyCH4III	ACNGT	1 cut(s)	727
HpyCH4V	TGCA	9 cut(s)	45, 281, 344, 413, 577, 615, 651, 682, 745
HpyF3I	CTNAG	2 cut(s)	69, 564
Hsp92II	CATG	4 cut(s)	281, 407, 574, 601
HspAI	GCGC	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	73, 226, 609, 658
LmnI	GCTCC	1 cut(s)	160
LweI	GCATC	2 cut(s)	564, 611
MaeI	CTAG	4 cut(s)	108, 549, 644, 707
MaeIII	GTNAC	2 cut(s)	418, 441
MalI	GATC	4 cut(s)	75, 228, 611, 660
MboI	GATC	4 cut(s)	73, 226, 609, 658
MboII	GAAGA	9 cut(s)	41, 47, 50, 182, 194, 315, 391, 538, 596
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	5 cut(s)	208, 363, 529, 616, 739
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	4 cut(s)	78, 166, 580, 690
MseI	TTAA	3 cut(s)	62, 362, 390
MslI	CAYNNNNRTG	1 cut(s)	408
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	215, 286
Mva1269I	GAATGC	2 cut(s)	45, 372
MvaI	CCWGG	1 cut(s)	215
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	4 cut(s)	73, 226, 609, 658
NlaIII	CATG	4 cut(s)	281, 407, 574, 601
NlaIV	GGNNCC	2 cut(s)	113, 733
NmuCI	GTSAC	2 cut(s)	418, 441
NspI	RCATGY	1 cut(s)	407
PciI	ACATGT	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PctI	GAATGC	2 cut(s)	45, 372
PfeI	GAWTC	1 cut(s)	487
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PscI	ACATGT	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	113, 733
PspPI	GGNCC	1 cut(s)	731
RseI	CAYNNNNRTG	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	62, 362, 390
Sau3AI	GATC	4 cut(s)	73, 226, 609, 658
Sau96I	GGNCC	1 cut(s)	731
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	215, 286
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	2 cut(s)	564, 611
SmiMI	CAYNNNNRTG	1 cut(s)	408
Sse9I	AATT	5 cut(s)	208, 363, 529, 616, 739
SspMI	CTAG	4 cut(s)	108, 549, 644, 707
SstI	GAGCTC	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	213, 284
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	727
TaqI	TCGA	1 cut(s)	355
TasI	AATT	5 cut(s)	208, 363, 529, 616, 739
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	3 cut(s)	62, 362, 390
Tru9I	TTAA	3 cut(s)	62, 362, 390
TscAI	CASTG	2 cut(s)	313, 540
TseFI	GTSAC	2 cut(s)	418, 441
Tsp45I	GTSAC	2 cut(s)	418, 441
TspDTI	ATGAA	1 cut(s)	586
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	2 cut(s)	313, 540
XapI	RAATTY	2 cut(s)	529, 739
XceI	RCATGY	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	4 cut(s)	108, 549, 644, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.