Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001804

Physical Location & Seq

Genomic Coordinates Forward (+)

53362251 .. 53374349

Gene Structure 12099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG342500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGTTCCAAGGAGAACAATCAAGGTCTCATTAGGCCTGCAAATTTTGAAGGTTTTGAACAAATATACTTTATAAGGAAACTGATCCTTGGAGAACCATTCATGCTAAACAAGGTTCTTTTGCTAAAGGCTAGGAACCAGTATACTTGGAAAGGGTTTGGGGCAATCCCTAATGCTTTACAGGAGCTAAAGTGTTCGCAGGGTTCAGATGATGAGAAAGGTGATGAGAGTGGTCATGCAACCGGGAGTCAGAATGAGAACCCCAGTGTCAATCCCAAATCTTCAGGAGACTCGAAAAATGCAAAGTTCTCTCGACATTTAATTATTCGCATTCAGAAGACTGCTTTTAAGGACAACTCACATGTAGGTGCATTTGTCACCGAGGCAGGGAAGAATTCAGTGCTTCTACCTTCTAGGCGCTTCAAAACTAAGGACATGATGTCTGAAGAGGAGATGTTCATGGCGTCTTTGATCTGCAATTTGGAAGTTGATTGTGGGAAGCTTGTAGTCTGCAAATCTGATCTTGATTGTATAAAGACCCTGCATTTTGATACACAGAGGTATATTAGAGTCAACCCTAGTTTTGGAAAATCTTACAGTTGGCCCCAAGAATTTGCATTGAATGGTTGCACCAATGATGCTTCAGCAACATACTTCCTGGGGAAATCTCCATTTCCAGCTTTGGATGCATTTGTAGAATTTGTTGCTACATTTGGAAATGTCTCAGGTGCTAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Herpes_UL52

Protein Analysis

246

Amino Acids

27.3

Weight (kDa)

8.15

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52800 AT5G52800 AT5G52800
fragaria_vesca	FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390 FvH4_7g30390
malus_domestica	MD01G1209800.v1.1
prunus_persica	Prupe.2G301900_v2.0.a1 Prupe.2G301900_v2.0.a1
pyrus_communis	pycom01g22030
rosa_chinensis	RchiOBHm_Chr1g0361031 RchiOBHm_Chr1g0378531 RchiOBHm_Chr2g0113271 RchiOBHm_Chr3g0497461
rosa_laevigata	RLG00000009952 RLG00000026431
rosa_multiflora	Rmu_sc0000016.1_g000027 Rmu_sc0000289.1_g000005 Rmu_sc0008712.1_g000011 Rmu_sc0016232.1_g000001 Rmu_sc0029230.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280420 Rroxscaffold_5G00373250
rosa_rugosa	Rorug01G0409400 Rorug01G0409500 Rorug01G0409600 Rorug03G0347000 Rorug05G0124500 Rorug07G0277400
rosa_samantha	Rh1AG077900 Rh1AG098500 Rh1AG430700 Rh1BG388700 Rh1CG402000 Rh1DG419800 Rh4CG118300 Rh6CG342500 Rh7DG248800
rosa_wichuraiana	Rw1G037720 Rw2G019830 Rw3G014430 Rw4G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	143
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	4 cut(s)	43, 394, 611, 698
AcuI	CTGAAG	3 cut(s)	267, 465, 627
AcyI	GRCGYC	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	387, 584
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	4 cut(s)	50, 59, 424, 622
AhdI	GACNNNNNGTC	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	657
AluBI	AGCT	3 cut(s)	187, 502, 680
AluI	AGCT	3 cut(s)	187, 502, 680
Alw26I	GTCTC	3 cut(s)	32, 282, 727
AlwI	GGATC	1 cut(s)	79
AoxI	GGCC	2 cut(s)	35, 602
ApoI	RAATTY	4 cut(s)	43, 394, 611, 698
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	603
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	233, 370
BbsI	GAAGAC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	659
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	3 cut(s)	32, 282, 727
BfaI	CTAG	3 cut(s)	132, 414, 579
BfoI	RGCGCY	1 cut(s)	421
Bme1390I	CCNGG	2 cut(s)	244, 659
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	603
BmiI	GGNNCC	3 cut(s)	7, 137, 605
BmrFI	CCNGG	2 cut(s)	244, 659
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	628, 676
BmuI	ACTGGG	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	4 cut(s)	9, 88, 381, 658
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	387, 584
Bse1I	ACTGG	2 cut(s)	139, 264
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	4 cut(s)	9, 88, 381, 658
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	2 cut(s)	387, 584
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	2 cut(s)	139, 264
BseRI	GAGGAG	1 cut(s)	464
BshFI	GGCC	2 cut(s)	37, 604
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	387, 584
BsmAI	GTCTC	3 cut(s)	32, 282, 727
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	37, 604
Bso31I	GGTCTC	1 cut(s)	32
Bsp143I	GATC	3 cut(s)	84, 471, 520
BspANI	GGCC	2 cut(s)	37, 604
BspCNI	CTCAG	1 cut(s)	737
BspLI	GGNNCC	3 cut(s)	7, 137, 605
BspPI	GGATC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	139, 264
BssECI	CCNNGG	4 cut(s)	9, 88, 381, 658
BssMI	GATC	3 cut(s)	84, 471, 520
BssNAI	GTATAC	1 cut(s)	144
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	2 cut(s)	9, 88
Bst1107I	GTATAC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	1 cut(s)	599
Bst6I	CTCTTC	1 cut(s)	441
BstACI	GRCGYC	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	429, 724
BstF5I	GGATG	1 cut(s)	691
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	3 cut(s)	87, 474, 523
BstMAI	GTCTC	3 cut(s)	32, 282, 727
BstMBI	GATC	3 cut(s)	84, 471, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	242, 657
BstV2I	GAAGAC	1 cut(s)	344
BstZ17I	GTATAC	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	37, 604
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	2 cut(s)	271, 405
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	603
CseI	GACGC	1 cut(s)	453
CviAII	CATG	5 cut(s)	103, 236, 362, 436, 460
CviJI	RGCY	6 cut(s)	37, 131, 187, 502, 604, 680
CviKI_1	RGCY	6 cut(s)	37, 131, 187, 502, 604, 680
DdeI	CTNAG	2 cut(s)	429, 724
DpnI	GATC	3 cut(s)	86, 473, 522
DpnII	GATC	3 cut(s)	84, 471, 520
DriI	GACNNNNNGTC	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	441
Eam1105I	GACNNNNNGTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	441
Eco130I	CCWWGG	2 cut(s)	9, 88
Eco147I	AGGCCT	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	32
Eco57I	CTGAAG	3 cut(s)	267, 465, 627
EcoRI	GAATTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	2 cut(s)	9, 88
EcoT22I	ATGCAT	1 cut(s)	691
ErhI	CCWWGG	2 cut(s)	9, 88
FaeI	CATG	5 cut(s)	106, 239, 365, 439, 463
FatI	CATG	5 cut(s)	102, 235, 361, 435, 459
FblI	GTMKAC	1 cut(s)	143
FokI	GGATG	1 cut(s)	698
FspBI	CTAG	3 cut(s)	132, 414, 579
GlaI	GCGC	1 cut(s)	419
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	37, 604
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	1 cut(s)	420
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	5 cut(s)	106, 239, 365, 439, 463
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	3 cut(s)	247, 290, 570
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	233, 370
Hpy166II	GTNNAC	2 cut(s)	144, 574
Hpy188I	TCNGA	5 cut(s)	208, 252, 336, 445, 520
Hpy188III	TCNNGA	3 cut(s)	285, 312, 524
Hpy8I	GTNNAC	2 cut(s)	144, 574
HpyAV	CCTTC	2 cut(s)	44, 420
HpyCH4III	ACNGT	1 cut(s)	599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	2 cut(s)	429, 724
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	5 cut(s)	106, 239, 365, 439, 463
HspAI	GCGC	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	84, 471, 520
LmnI	GCTCC	1 cut(s)	184
LweI	GCATC	2 cut(s)	628, 676
MaeI	CTAG	3 cut(s)	132, 414, 579
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	86, 473, 522
MboI	GATC	3 cut(s)	84, 471, 520
MboII	GAAGA	4 cut(s)	273, 349, 403, 458
MluCI	AATT	6 cut(s)	43, 321, 394, 478, 611, 698
MlyI	GAGTC	3 cut(s)	256, 284, 579
MnlI	CCTC	3 cut(s)	376, 442, 552
Mph1103I	ATGCAT	1 cut(s)	691
MseI	TTAA	2 cut(s)	320, 348
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	244, 659
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	659
MwoI	GCNNNNNNNGC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	3 cut(s)	84, 471, 520
NlaIII	CATG	5 cut(s)	106, 239, 365, 439, 463
NlaIV	GGNNCC	3 cut(s)	7, 137, 605
NmuCI	GTSAC	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	691
NspI	RCATGY	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	37
PciI	ACATGT	1 cut(s)	361
PctI	GAATGC	1 cut(s)	330
PleI	GAGTC	3 cut(s)	255, 284, 578
PpsI	GAGTC	3 cut(s)	255, 284, 578
PscI	ACATGT	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	3 cut(s)	7, 137, 605
PspPI	GGNCC	1 cut(s)	603
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	320, 348
Sau3AI	GATC	3 cut(s)	84, 471, 520
Sau96I	GGNCC	1 cut(s)	603
SchI	GAGTC	3 cut(s)	256, 284, 579
ScrFI	CCNGG	2 cut(s)	244, 659
SfaNI	GCATC	2 cut(s)	628, 676
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	6 cut(s)	43, 321, 394, 478, 611, 698
SseBI	AGGCCT	1 cut(s)	37
SspMI	CTAG	3 cut(s)	132, 414, 579
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	242, 657
StyI	CCWWGG	2 cut(s)	9, 88
TaaI	ACNGT	1 cut(s)	599
TaqI	TCGA	2 cut(s)	293, 313
TasI	AATT	6 cut(s)	43, 321, 394, 478, 611, 698
Tru1I	TTAA	2 cut(s)	320, 348
Tru9I	TTAA	2 cut(s)	320, 348
TscAI	CASTG	2 cut(s)	271, 405
TseFI	GTSAC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	91, 448
TspRI	CASTG	2 cut(s)	271, 405
XapI	RAATTY	4 cut(s)	43, 394, 611, 698
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	3 cut(s)	132, 414, 579
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.