Prupe.2G301900_v2.0.a1

DNA-directed primase polymerase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
28953545 .. 28958150
4606 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G301900.2

Sequence Viewer

Length: 1764 bp
ATGGACGACGTTGATCGGTTGTTCGAGTGCTTCAAATGCGGCATCTCCCCTCCTCAATCTGCTTTGAGGGAAAGAAAGAGAAGCAAAAGCAACTTGAAGCGAAGAAGTAAAACCCAGGAGGTCTCTTCTCCAGGATCAGCAGCAGAGCAAACACAGAAATATGCATCAGAAATACAACTTTCTGCGGAGAAGTCTGGTTCGGGAACTGTTAAAGCAAACAACTTTAACCGTGCAAAGCAGTTTTCTCCAGTTGTATTCTATGGGTCTCCAAATGGGGTGCCTCCTAAAAAGCCATCAAGATCTTTGCTGCGATTGTTACGTGAAATACGTGTTGATCTTGCTACCCAAAAAAGATTGAGTTCAAGGAAGGAAGTATGGGCGACATTTCCAAGGCAGGATGAAGCAATGCAGTTTGCCAAAGGGAATGGGAACGTTCATGTTTTTAGTTATCAAGATCACTATAGTGGACAAAGAAGGTTCCTTGTTTCAACTTATGACGACTTCTGGAGAAGGTACAACAATATGAATCCCAAGTTCCGTCACCATTACGAAGTGATTCAGGAGGGTTTACCATGCCACCTTTACTTTGACTTGGAGTTCAATAAGAGAGACAATGCAGGCAGAAATGGAGACGAAATGGTTGATGTCTTGATTTCAGTAATTTTCGAAGCCTTACTTGAAAAGTATTCTATTCAAGGAAACCAGGAATGGATATTGGAGCTTGATTCCTCTACTGAAGCAAAGTTCTCTCGTCACCTAATCATTCGCATAGAAAAGACTGCTTTTAAGGACAACTCACATGTAGGTGCATTTGTCACTGAGATATGCTCACGGATTTCAAGTGCAAAGGAGAGGGATGGAAGATTTGGAAATTTTTTTGTTAGAAAAGATTCAAAGTCTTCGAACTCCGCTAGTCAACTATTTGTGGACACTGCCGTATATACTCGAAATCGTTGCTTTCGTTTAGCTCTATCATCAAAGGCAGGGAAGAATTCAGTGCTTCTACCTACTGGGCGTTTCAAAGCCAAGGACATGCAATCTGAGGAGGAGATGTTCATGGCATCCTTGATCTGCAATTTGGATGTTGATTGTGAGAAGCTTCTAGTATGCAAAACAGATCTTGATTGTATAAAGACTCTGCATTTTGATACAGAGGTAAACCGTAACTTTGGAAAATGTTACAGTTGGCCCCAAGAATTTGCGTTGAATGGTGGCACAACTGATGCTTCAGCAACATACTTCCTTGGGAAATCTCCATTCCCAGCTTTGGATGCATTTATAGAGTCTGTTGCTACCGTTGGAAATGTATCAGGTAAAATTCGTAGCTGGTACTGGTTCTCAGAGTTTGGACACATGGTCTACAGCATGTCAAGAAACAGATACTGTGAGAGAATCGGCAGACAGCATAAAAGCAATCATGTGATATACGTTGCTGACCTCAGAAGGGCGGCTTATTATCAGAAATGTCATGATCCTGACTGTAGAGGTTATCGTTCTCCCTCGCGTCCAATTCCATTGGATATCATCCCTGAAATGGTGCATGAATATCGAAATGATCATGAATGTGTTCCTTATGGGGATGAGAACATGACTAGCAGCTGCATTACAGATTCATGGTGGCTTGAAGCCATAAGAGTTGCAGATGATGTTGAAAATAAGAAGATAGACATCAGCAATATGGAAAACATTGATTTGGAAGATGACAACTGGTGGATGGCTGTGGAAAAAACTGCATCCCAAGCTGAACTAGCGCACTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

588

Amino Acids

67.55

Weight (kDa)

8.23

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 1359
AccII CGCG 1 cut(s) 1504
AciI CCGC 4 cut(s) 39, 185, 909, 1448
AclI AACGTT 1 cut(s) 432
AclWI GGATC 2 cut(s) 142, 1466
AcsI RAATTY 4 cut(s) 871, 991, 1196, 1317
AcuI CTGAAG 2 cut(s) 756, 1212
AfaI GTAC 2 cut(s) 515, 1331
AfiI CCNNNNNNNGG 3 cut(s) 1267, 1444, 1534
AflIII ACRYGT 2 cut(s) 328, 799
AhdI GACNNNNNGTC 1 cut(s) 1355
AjnI CCWGG 3 cut(s) 114, 130, 702
AleI CACNNNNGTG 1 cut(s) 462
AloI GAACNNNNNNTCC 2 cut(s) 1037, 1069
AluBI AGCT 7 cut(s) 721, 968, 1099, 1265, 1326, 1599, 1742
AluI AGCT 7 cut(s) 721, 968, 1099, 1265, 1326, 1599, 1742
Alw26I GTCTC 4 cut(s) 127, 270, 603, 624
AlwI GGATC 2 cut(s) 142, 1466
AlwNI CAGNNNCTG 1 cut(s) 1383
AoxI GGCC 1 cut(s) 1187
ApeKI GCWGC 4 cut(s) 140, 307, 1596, 1599
ApoI RAATTY 4 cut(s) 871, 991, 1196, 1317
Asp700I GAANNNNTTC 3 cut(s) 555, 889, 1566
AspLEI GCGC 1 cut(s) 1753
AspS9I GGNCC 1 cut(s) 1188
AsuHPI GGTGA 2 cut(s) 533, 746
AsuII TTCGAA 2 cut(s) 666, 902
BaeI ACNNNNGTAYC 2 cut(s) 1140, 1173
BanI GGYRCC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 891
BbvI GCAGC 4 cut(s) 152, 294, 1586, 1608
BccI CCATC 3 cut(s) 301, 851, 1708
BceAI ACGGC 1 cut(s) 920
BcgI CGANNNNNNTGC 4 cut(s) 936, 970, 1529, 1563
BciT130I CCWGG 3 cut(s) 116, 132, 704
BclI TGATCA 1 cut(s) 1555
BcoDI GTCTC 4 cut(s) 127, 270, 603, 624
BfaI CTAG 4 cut(s) 912, 1103, 1593, 1748
BfmI CTRYAG 3 cut(s) 460, 1360, 1480
BglII AGATCT 2 cut(s) 299, 1117
BisI GCNGC 6 cut(s) 40, 141, 308, 1449, 1597, 1600
BlsI GCNGC 6 cut(s) 41, 142, 309, 1450, 1598, 1601
Bme1390I CCNGG 3 cut(s) 116, 132, 704
BmeRI GACNNNNNGTC 1 cut(s) 1355
BmgT120I GGNCC 1 cut(s) 1188
BmiI GGNNCC 3 cut(s) 279, 479, 1190
BmrFI CCNGG 3 cut(s) 116, 132, 704
BmrI ACTGGG 1 cut(s) 1020
BmsI GCATC 6 cut(s) 51, 173, 1070, 1213, 1261, 1742
BmuI ACTGGG 1 cut(s) 1020
BpiI GAAGAC 1 cut(s) 891
BplI GAGNNNNNCTC 2 cut(s) 812, 844
BpmI CTGGAG 3 cut(s) 114, 231, 526
Bpu14I TTCGAA 2 cut(s) 666, 902
BsaAI YACGTR 2 cut(s) 320, 329
BsaBI GATNNNNATC 1 cut(s) 1667
BsaI GGTCTC 2 cut(s) 127, 270
BsaJI CCNNGG 4 cut(s) 114, 389, 1026, 1243
BsaXI ACNNNNNCTCC 2 cut(s) 1037, 1067
Bsc4I CCNNNNNNNGG 3 cut(s) 1267, 1444, 1534
Bse1I ACTGG 4 cut(s) 248, 1015, 1337, 1712
Bse3DI GCAATG 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 1667
BseBI CCWGG 3 cut(s) 116, 132, 704
BseDI CCNNGG 4 cut(s) 114, 389, 1026, 1243
BseGI GGATG 9 cut(s) 403, 862, 1061, 1087, 1276, 1524, 1585, 1719, 1733
BseJI GATNNNNATC 1 cut(s) 1667
BseLI CCNNNNNNNGG 3 cut(s) 1267, 1444, 1534
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 4 cut(s) 810, 1032, 1353, 1453
BseNI ACTGG 4 cut(s) 248, 1015, 1337, 1712
BseRI GAGGAG 3 cut(s) 42, 1058, 1061
BseXI GCAGC 4 cut(s) 152, 294, 1586, 1608
BseYI CCCAGC 1 cut(s) 1261
Bsh1236I CGCG 1 cut(s) 1504
BshFI GGCC 1 cut(s) 1189
BshNI GGYRCC 1 cut(s) 277
BslI CCNNNNNNNGG 3 cut(s) 1267, 1444, 1534
BsmAI GTCTC 4 cut(s) 127, 270, 603, 624
BsmBI CGTCTC 1 cut(s) 624
BsnI GGCC 1 cut(s) 1189
Bso31I GGTCTC 2 cut(s) 127, 270
Bsp119I TTCGAA 2 cut(s) 666, 902
Bsp143I GATC 9 cut(s) 13, 134, 299, 334, 454, 1068, 1117, 1471, 1555
BspACI CCGC 4 cut(s) 39, 185, 909, 1448
BspANI GGCC 1 cut(s) 1189
BspCNI CTCAG 4 cut(s) 811, 1033, 1352, 1452
BspFNI CGCG 1 cut(s) 1504
BspHI TCATGA 2 cut(s) 1468, 1558
BspLI GGNNCC 3 cut(s) 279, 479, 1190
BspPI GGATC 2 cut(s) 142, 1466
BspT104I TTCGAA 2 cut(s) 666, 902
BspT107I GGYRCC 1 cut(s) 277
BspTNI GGTCTC 2 cut(s) 127, 270
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 4 cut(s) 248, 1015, 1337, 1712
BssECI CCNNGG 4 cut(s) 114, 389, 1026, 1243
BssMI GATC 9 cut(s) 13, 134, 299, 334, 454, 1068, 1117, 1471, 1555
BssT1I CCWWGG 3 cut(s) 389, 1026, 1243
Bst2UI CCWGG 3 cut(s) 116, 132, 704
Bst4CI ACNGT 7 cut(s) 208, 230, 1163, 1184, 1297, 1385, 1481
Bst6I CTCTTC 1 cut(s) 130
BstBAI YACGTR 2 cut(s) 320, 329
BstBI TTCGAA 2 cut(s) 666, 902
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 4 cut(s) 819, 1041, 1339, 1439
BstF5I GGATG 9 cut(s) 403, 862, 1061, 1087, 1276, 1524, 1585, 1719, 1733
BstFNI CGCG 1 cut(s) 1504
BstHHI GCGC 1 cut(s) 1753
BstKTI GATC 9 cut(s) 16, 137, 302, 337, 457, 1071, 1120, 1474, 1558
BstMAI GTCTC 4 cut(s) 127, 270, 603, 624
BstMBI GATC 9 cut(s) 13, 134, 299, 334, 454, 1068, 1117, 1471, 1555
BstMWI GCNNNNNNNGC 4 cut(s) 36, 1271, 1739, 1748
BstNI CCWGG 3 cut(s) 116, 132, 704
BstNSI RCATGY 3 cut(s) 803, 1036, 1369
BstSCI CCNGG 3 cut(s) 114, 130, 702
BstSFI CTRYAG 3 cut(s) 460, 1360, 1480
BstUI CGCG 1 cut(s) 1504
BstV1I GCAGC 4 cut(s) 152, 294, 1586, 1608
BstV2I GAAGAC 1 cut(s) 891
BstX2I RGATCY 2 cut(s) 299, 1117
BstYI RGATCY 2 cut(s) 299, 1117
BsuRI GGCC 1 cut(s) 1189
BtsCI GGATG 9 cut(s) 403, 862, 1061, 1087, 1276, 1524, 1585, 1719, 1733
BtsI GCAGTG 1 cut(s) 930
BtsIMutI CAGTG 3 cut(s) 816, 930, 1002
Cac8I GCNNGC 1 cut(s) 619
CaiI CAGNNNCTG 1 cut(s) 1383
CciI TCATGA 2 cut(s) 1468, 1558
CfoI GCGC 1 cut(s) 1753
Cfr13I GGNCC 1 cut(s) 1188
CseI GACGC 1 cut(s) 1493
Csp6I GTAC 2 cut(s) 514, 1330
CviQI GTAC 2 cut(s) 514, 1330
DdeI CTNAG 4 cut(s) 819, 1041, 1339, 1439
DpnI GATC 9 cut(s) 15, 136, 301, 336, 456, 1070, 1119, 1473, 1557
DpnII GATC 9 cut(s) 13, 134, 299, 334, 454, 1068, 1117, 1471, 1555
DriI GACNNNNNGTC 1 cut(s) 1355
Eam1104I CTCTTC 1 cut(s) 130
Eam1105I GACNNNNNGTC 1 cut(s) 1355
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 3 cut(s) 389, 1026, 1243
Eco31I GGTCTC 2 cut(s) 127, 270
Eco32I GATATC 1 cut(s) 1522
Eco57I CTGAAG 2 cut(s) 756, 1212
EcoRI GAATTC 1 cut(s) 991
EcoRII CCWGG 3 cut(s) 114, 130, 702
EcoRV GATATC 1 cut(s) 1522
EcoT14I CCWWGG 3 cut(s) 389, 1026, 1243
EcoT22I ATGCAT 2 cut(s) 166, 1276
ErhI CCWWGG 3 cut(s) 389, 1026, 1243
Esp3I CGTCTC 1 cut(s) 624
FalI AAGNNNNNCTT 4 cut(s) 660, 692, 1435, 1467
FbaI TGATCA 1 cut(s) 1555
FblI GTMKAC 1 cut(s) 1359
Fnu4HI GCNGC 6 cut(s) 40, 141, 308, 1449, 1597, 1600
FokI GGATG 9 cut(s) 410, 869, 1048, 1094, 1283, 1511, 1592, 1720, 1726
Fsp4HI GCNGC 6 cut(s) 40, 141, 308, 1449, 1597, 1600
FspBI CTAG 4 cut(s) 912, 1103, 1593, 1748
GlaI GCGC 1 cut(s) 1752
GluI GCNGC 6 cut(s) 40, 141, 308, 1449, 1597, 1600
GsaI CCCAGC 1 cut(s) 1265
GsuI CTGGAG 3 cut(s) 114, 231, 526
HaeIII GGCC 1 cut(s) 1189
HgaI GACGC 1 cut(s) 1493
HhaI GCGC 1 cut(s) 1753
Hin6I GCGC 1 cut(s) 1751
HinP1I GCGC 1 cut(s) 1751
HincII GTYRAC 1 cut(s) 917
HindII GTYRAC 1 cut(s) 917
HindIII AAGCTT 1 cut(s) 1097
HinfI GANTC 8 cut(s) 526, 556, 725, 890, 1135, 1283, 1392, 1610
HphI GGTGA 2 cut(s) 533, 746
Hpy166II GTNNAC 6 cut(s) 467, 569, 917, 928, 1159, 1360
Hpy188I TCNGA 5 cut(s) 169, 1042, 1342, 1442, 1461
Hpy8I GTNNAC 6 cut(s) 467, 569, 917, 928, 1159, 1360
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 361, 468, 504, 1437
HpyCH4III ACNGT 7 cut(s) 208, 230, 1163, 1184, 1297, 1385, 1481
HpyCH4IV ACGT 5 cut(s) 9, 319, 328, 432, 1428
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 1271, 1739, 1748
HpyF3I CTNAG 4 cut(s) 819, 1041, 1339, 1439
HpySE526I ACGT 5 cut(s) 9, 319, 328, 432, 1428
HspAI GCGC 1 cut(s) 1751
Ksp22I TGATCA 1 cut(s) 1555
Kzo9I GATC 9 cut(s) 13, 134, 299, 334, 454, 1068, 1117, 1471, 1555
LmnI GCTCC 1 cut(s) 718
Lsp1109I GCAGC 4 cut(s) 152, 294, 1586, 1608
LweI GCATC 6 cut(s) 51, 173, 1070, 1213, 1261, 1742
MaeI CTAG 4 cut(s) 912, 1103, 1593, 1748
MaeII ACGT 5 cut(s) 9, 319, 328, 432, 1428
MaeIII GTNAC 6 cut(s) 315, 539, 752, 814, 1163, 1178
MalI GATC 9 cut(s) 15, 136, 301, 336, 456, 1070, 1119, 1473, 1557
MboI GATC 9 cut(s) 13, 134, 299, 334, 454, 1068, 1117, 1471, 1555
MboII GAAGA 7 cut(s) 114, 117, 873, 891, 1000, 1672, 1709
MflI RGATCY 2 cut(s) 299, 1117
MluCI AATT 7 cut(s) 660, 871, 991, 1075, 1196, 1317, 1509
MlyI GAGTC 2 cut(s) 1129, 1292
MmeI TCCRAC 1 cut(s) 1279
Mph1103I ATGCAT 2 cut(s) 166, 1276
MroXI GAANNNNTTC 3 cut(s) 555, 889, 1566
MseI TTAA 3 cut(s) 210, 225, 786
MslI CAYNNNNRTG 3 cut(s) 462, 804, 1563
MspA1I CMGCKG 1 cut(s) 1599
MspR9I CCNGG 3 cut(s) 116, 132, 704
MvaI CCWGG 3 cut(s) 116, 132, 704
MvnI CGCG 1 cut(s) 1504
MwoI GCNNNNNNNGC 4 cut(s) 36, 1271, 1739, 1748
NdeII GATC 9 cut(s) 13, 134, 299, 334, 454, 1068, 1117, 1471, 1555
NlaIV GGNNCC 3 cut(s) 279, 479, 1190
NmuCI GTSAC 3 cut(s) 539, 752, 814
NsiI ATGCAT 2 cut(s) 166, 1276
NspI RCATGY 3 cut(s) 803, 1036, 1369
NspV TTCGAA 2 cut(s) 666, 902
OliI CACNNNNGTG 1 cut(s) 462
PagI TCATGA 2 cut(s) 1468, 1558
PciI ACATGT 1 cut(s) 799
PcsI WCGNNNNNNNCGW 2 cut(s) 325, 958
PdmI GAANNNNTTC 3 cut(s) 555, 889, 1566
PfeI GAWTC 6 cut(s) 526, 556, 725, 890, 1392, 1610
PfoI TCCNGGA 1 cut(s) 130
PkrI GCNGC 6 cut(s) 41, 142, 309, 1450, 1598, 1601
PleI GAGTC 2 cut(s) 1129, 1291
PpsI GAGTC 2 cut(s) 1129, 1291
Ppu21I YACGTR 2 cut(s) 320, 329
PscI ACATGT 1 cut(s) 799
Psp1406I AACGTT 1 cut(s) 432
Psp6I CCWGG 3 cut(s) 114, 130, 702
PspFI CCCAGC 1 cut(s) 1261
PspGI CCWGG 3 cut(s) 114, 130, 702
PspN4I GGNNCC 3 cut(s) 279, 479, 1190
PspPI GGNCC 1 cut(s) 1188
PstNI CAGNNNCTG 1 cut(s) 1383
PsuI RGATCY 2 cut(s) 299, 1117
PvuII CAGCTG 1 cut(s) 1599
RsaI GTAC 2 cut(s) 515, 1331
RsaNI GTAC 2 cut(s) 514, 1330
RseI CAYNNNNRTG 3 cut(s) 462, 804, 1563
SaqAI TTAA 3 cut(s) 210, 225, 786
SatI GCNGC 6 cut(s) 40, 141, 308, 1449, 1597, 1600
Sau3AI GATC 9 cut(s) 13, 134, 299, 334, 454, 1068, 1117, 1471, 1555
Sau96I GGNCC 1 cut(s) 1188
SchI GAGTC 2 cut(s) 1129, 1292
ScrFI CCNGG 3 cut(s) 116, 132, 704
SfaNI GCATC 6 cut(s) 51, 173, 1070, 1213, 1261, 1742
SfcI CTRYAG 3 cut(s) 460, 1360, 1480
SfuI TTCGAA 2 cut(s) 666, 902
SmiMI CAYNNNNRTG 3 cut(s) 462, 804, 1563
Sse9I AATT 7 cut(s) 660, 871, 991, 1075, 1196, 1317, 1509
SsiI CCGC 4 cut(s) 39, 185, 909, 1448
SspMI CTAG 4 cut(s) 912, 1103, 1593, 1748
StyD4I CCNGG 3 cut(s) 114, 130, 702
StyI CCWWGG 3 cut(s) 389, 1026, 1243
TaaI ACNGT 7 cut(s) 208, 230, 1163, 1184, 1297, 1385, 1481
TaiI ACGT 5 cut(s) 12, 322, 331, 435, 1431
TaqI TCGA 5 cut(s) 24, 666, 902, 946, 1549
TasI AATT 7 cut(s) 660, 871, 991, 1075, 1196, 1317, 1509
TauI GCSGC 2 cut(s) 42, 1451
TfiI GAWTC 6 cut(s) 526, 556, 725, 890, 1392, 1610
Tru1I TTAA 3 cut(s) 210, 225, 786
Tru9I TTAA 3 cut(s) 210, 225, 786
TscAI CASTG 3 cut(s) 823, 937, 1002
TseFI GTSAC 3 cut(s) 539, 752, 814
TseI GCWGC 4 cut(s) 140, 307, 1596, 1599
Tsp45I GTSAC 3 cut(s) 539, 752, 814
TspDTI ATGAA 7 cut(s) 414, 425, 539, 1045, 1557, 1575, 1602
TspGWI ACGGA 2 cut(s) 527, 847
TspRI CASTG 3 cut(s) 823, 937, 1002
XapI RAATTY 4 cut(s) 871, 991, 1196, 1317
XceI RCATGY 3 cut(s) 803, 1036, 1369
XmiI GTMKAC 1 cut(s) 1359
XmnI GAANNNNTTC 3 cut(s) 555, 889, 1566
XspI CTAG 4 cut(s) 912, 1103, 1593, 1748
Zsp2I ATGCAT 2 cut(s) 166, 1276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.